Wall clock time and date at job start Sun Mar 29 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47371 * 2 1 4 4 C 1.36943 * 119.99984 * 269.42188 * 3 2 1 5 5 H 1.08000 * 119.99606 * 326.02484 * 4 3 2 6 6 C 1.38808 * 120.00119 * 146.03159 * 4 3 2 7 7 N 1.31618 * 120.00182 * 336.62602 * 6 4 3 8 8 Si 1.86803 * 120.00088 * 156.63121 * 6 4 3 9 9 H 1.48497 * 109.46811 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47530 * 119.99681 * 8 6 4 11 11 H 1.48503 * 109.46810 * 239.99903 * 8 6 4 12 12 C 1.46500 * 120.00164 * 89.41685 * 3 2 1 13 13 C 1.50698 * 109.47350 * 90.00223 * 12 3 2 14 14 C 1.39865 * 126.03744 * 90.02472 * 13 12 3 15 15 N 1.30840 * 108.20277 * 179.97438 * 14 13 12 16 16 N 1.40089 * 108.20240 * 0.02562 * 15 14 13 17 17 C 1.46498 * 126.03365 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46993 * 95.00108 * 17 16 15 19 19 C 1.53002 * 109.47052 * 214.99680 * 17 16 15 20 20 C 1.34941 * 107.92518 * 359.97438 * 16 15 14 21 21 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46951 * 299.99672 * 1 2 3 23 23 H 1.08996 * 109.46989 * 60.00135 * 1 2 3 24 24 H 1.09007 * 109.47066 * 239.99770 * 2 1 3 25 25 H 1.09005 * 109.47635 * 120.00337 * 2 1 3 26 26 H 0.96996 * 120.00502 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46952 * 329.99953 * 12 3 2 28 28 H 1.09001 * 109.47333 * 210.00477 * 12 3 2 29 29 H 1.08005 * 125.90455 * 359.71959 * 14 13 12 30 30 H 1.08990 * 109.47546 * 335.00188 * 17 16 15 31 31 H 1.09004 * 109.47029 * 59.99593 * 18 17 16 32 32 H 1.08997 * 109.47570 * 179.97438 * 18 17 16 33 33 H 1.08997 * 109.47275 * 299.99439 * 18 17 16 34 34 H 1.08999 * 109.47299 * 60.00368 * 19 17 16 35 35 H 1.08998 * 109.47391 * 180.02562 * 19 17 16 36 36 H 1.09004 * 109.47221 * 300.00560 * 19 17 16 37 37 H 1.08005 * 126.12745 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2579 2.0227 -1.1859 5 1 2.6249 1.4668 -2.0360 6 6 2.0292 3.3875 -1.2953 7 7 1.1846 3.9808 -0.4786 8 14 2.9201 4.3821 -2.6017 9 1 3.8084 3.4866 -3.3853 10 1 1.9264 5.0112 -3.5082 11 1 3.7341 5.4391 -1.9495 12 6 2.2504 2.0761 1.2686 13 6 3.6694 1.8408 1.7181 14 6 4.7761 2.6342 1.3984 15 7 5.8312 2.1134 1.9706 16 7 5.4287 0.9702 2.6731 17 6 6.2989 0.0881 3.4548 18 6 6.2654 0.5109 4.9248 19 6 5.8080 -1.3555 3.3280 20 6 4.0981 0.8249 2.5024 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.0245 4.9343 -0.5552 27 1 1.5623 1.6946 2.0230 28 1 2.0847 3.1449 1.1331 29 1 4.7628 3.5210 0.7821 30 1 7.3197 0.1591 3.0795 31 1 5.2444 0.4400 5.3001 32 1 6.9124 -0.1455 5.5066 33 1 6.6151 1.5393 5.0152 34 1 5.8318 -1.6567 2.2808 35 1 6.4551 -2.0117 3.9100 36 1 4.7871 -1.4264 3.7033 37 1 3.4849 0.0387 2.9177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271152101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:58 Heat of formation + Delta-G solvation = 74.335511 kcal Electronic energy + Delta-G solvation = -17311.657803 eV Core-core repulsion = 14704.690115 eV Total energy + Delta-G solvation = -2606.967688 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99130 -37.74971 -36.45359 -33.70246 -32.11969 -30.99175 -29.97088 -28.19657 -27.05595 -25.24824 -23.46665 -22.22731 -21.01855 -20.67326 -18.65381 -17.42298 -16.63691 -16.19559 -15.73613 -15.63825 -15.42183 -14.95414 -14.48734 -14.03237 -13.74465 -13.70614 -13.33413 -13.11034 -13.06171 -12.99796 -12.82040 -12.41536 -12.33518 -12.21467 -12.03738 -11.89761 -11.85905 -11.47000 -11.28153 -10.45247 -10.14747 -9.08656 -8.52056 -7.75542 -5.29214 1.10841 1.44533 1.49828 1.58120 1.76738 2.05424 2.57319 3.32261 3.62371 3.96354 4.00597 4.07791 4.14863 4.20139 4.50752 4.62363 4.66704 4.69773 4.81917 4.83749 4.91474 4.93000 4.98142 5.11706 5.19402 5.25716 5.25810 5.35761 5.46831 5.62548 5.75316 5.87617 5.94597 6.38851 6.56158 6.93275 7.25904 7.98500 8.48056 9.21616 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.007858 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.949274 B = 3562.234363 C = 4248.493638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 N -0.593 5.593 4 C -0.252 4.252 5 H 0.046 0.954 6 C -0.031 4.031 7 N -0.912 5.912 8 Si 0.940 3.060 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.288 1.288 12 C 0.216 3.784 13 C -0.239 4.239 14 C 0.043 3.957 15 N -0.335 5.335 16 N -0.369 5.369 17 C 0.145 3.855 18 C -0.155 4.155 19 C -0.156 4.156 20 C 0.056 3.944 21 H 0.066 0.934 22 H 0.036 0.964 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.250 0.750 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -10.597 10.549 16.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.382 4.382 5 H 0.064 0.936 6 C -0.228 4.228 7 N -0.557 5.557 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.215 1.215 12 C 0.089 3.911 13 C -0.252 4.252 14 C -0.142 4.142 15 N -0.158 5.158 16 N -0.153 5.153 17 C 0.045 3.955 18 C -0.213 4.213 19 C -0.214 4.214 20 C -0.091 4.091 21 H 0.085 0.915 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.175 0.825 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.342 -10.450 10.810 17.194 hybrid contribution -0.624 1.068 -1.196 1.721 sum 7.718 -9.382 9.614 15.492 Atomic orbital electron populations 1.22141 0.98820 1.00051 1.00022 1.20951 0.92495 0.86109 0.98962 1.44077 1.74600 1.10927 1.01738 1.19153 1.36037 0.91732 0.91313 0.93605 1.25486 0.98222 0.99176 0.99890 1.70088 1.34171 1.09937 1.41534 0.85635 0.78648 0.79045 0.79715 1.20107 1.21848 1.21469 1.19104 0.87174 0.99717 0.85117 1.21274 0.99417 0.98869 1.05631 1.23588 0.90991 1.00386 0.99197 1.77113 1.23714 1.00444 1.14519 1.49032 1.06294 1.20700 1.39309 1.21566 0.93885 0.88871 0.91224 1.22187 1.03605 1.02064 0.93470 1.22165 1.03546 0.92586 1.03072 1.22410 0.85527 1.00323 1.00847 0.91477 0.94521 0.95659 0.94613 0.92581 0.94057 0.94631 0.91091 0.82533 0.88698 0.91873 0.87661 0.93697 0.92926 0.87273 0.90896 0.79174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 10.24 71.98 0.74 -5.07 16 2 C 0.14 5.76 6.39 86.38 0.55 6.31 16 3 N -0.59 -29.39 2.44 -706.33 -1.72 -31.11 16 4 C -0.25 -13.96 9.48 84.03 0.80 -13.16 16 5 H 0.05 2.61 7.93 -2.91 -0.02 2.58 16 6 C -0.03 -1.71 4.94 84.86 0.42 -1.29 16 7 N -0.91 -53.13 11.34 21.65 0.25 -52.88 16 8 Si 0.94 45.60 29.61 68.60 2.03 47.63 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 12 C 0.22 10.22 5.78 85.63 0.49 10.71 16 13 C -0.24 -10.10 5.68 -20.15 -0.11 -10.21 16 14 C 0.04 1.90 11.96 85.23 1.02 2.92 16 15 N -0.34 -13.57 12.58 -57.02 -0.72 -14.28 16 16 N -0.37 -12.02 3.53 -327.50 -1.15 -13.17 16 17 C 0.14 3.18 3.93 44.99 0.18 3.36 16 18 C -0.16 -2.74 9.52 71.98 0.69 -2.05 16 19 C -0.16 -2.48 8.83 71.98 0.64 -1.85 16 20 C 0.06 1.89 10.50 83.54 0.88 2.77 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.04 1.47 8.04 -2.38 -0.02 1.45 16 25 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 26 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 28 H 0.07 3.90 5.33 -2.39 -0.01 3.89 16 29 H 0.16 7.20 8.06 -2.91 -0.02 7.18 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.08 7.16 -2.38 -0.02 1.06 16 37 H 0.19 5.04 7.26 -2.91 -0.02 5.02 16 Total: -1.00 -66.55 309.57 5.98 -60.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.02 Total: 10.83 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 6.28 Total: -7.57 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.35 Total: -111.45 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -66.55 5.98 -60.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271152101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.898 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds