Wall clock time and date at job start Sun Mar 29 2020 21:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46909 * 2 1 4 4 C 1.34956 * 126.03564 * 125.31386 * 3 2 1 5 5 C 1.35312 * 107.74561 * 180.14539 * 4 3 2 6 6 C 1.50699 * 126.03995 * 179.87094 * 5 4 3 7 7 H 1.09002 * 109.46959 * 19.71343 * 6 5 4 8 8 C 1.53000 * 109.47083 * 259.71128 * 6 5 4 9 9 N 1.46901 * 109.47121 * 139.71585 * 6 5 4 10 10 C 1.46903 * 110.99880 * 205.00533 * 9 6 5 11 11 C 1.52999 * 109.47276 * 180.02562 * 10 9 6 12 12 C 1.50696 * 109.47268 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99739 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00032 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00130 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00265 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47047 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46822 * 119.99766 * 16 14 12 19 19 H 1.48494 * 109.47325 * 240.00185 * 16 14 12 20 20 C 1.39872 * 107.91993 * 359.60625 * 5 4 3 21 21 N 1.30836 * 108.20164 * 0.24414 * 20 5 4 22 22 H 1.09010 * 109.46812 * 59.99889 * 1 2 3 23 23 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47071 * 300.00257 * 1 2 3 25 25 H 1.08997 * 109.47003 * 240.00471 * 2 1 3 26 26 H 1.08996 * 109.47042 * 120.00251 * 2 1 3 27 27 H 1.08001 * 126.12620 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 29 29 H 1.08992 * 109.47399 * 299.99938 * 8 6 5 30 30 H 1.09004 * 109.46724 * 60.00424 * 8 6 5 31 31 H 1.00892 * 111.00435 * 81.04369 * 9 6 5 32 32 H 1.09003 * 109.46525 * 299.99167 * 10 9 6 33 33 H 1.08991 * 109.47692 * 59.99249 * 10 9 6 34 34 H 1.09003 * 109.46846 * 299.99603 * 11 10 9 35 35 H 1.09006 * 109.47089 * 59.99482 * 11 10 9 36 36 H 0.97004 * 120.00542 * 179.97438 * 15 14 12 37 37 H 1.08000 * 125.89961 * 180.22194 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8777 1.9195 0.8905 5 6 3.0719 3.2135 0.5459 6 6 3.9559 4.1995 1.2652 7 1 4.6772 3.6602 1.8792 8 6 3.0971 5.0978 2.1577 9 7 4.6698 5.0251 0.2821 10 6 5.9196 5.5526 0.8460 11 6 6.6331 6.4058 -0.2047 12 6 7.9148 6.9473 0.3740 13 1 8.1925 6.7073 1.3897 14 6 8.7329 7.7491 -0.3932 15 7 8.3945 8.0418 -1.6299 16 14 10.3214 8.4211 0.3243 17 1 10.4707 7.9492 1.7243 18 1 11.4713 7.9421 -0.4843 19 1 10.2853 9.9054 0.3029 20 6 2.3121 3.4726 -0.5995 21 7 1.6801 2.3750 -0.9276 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.3274 1.4096 1.7297 28 1 3.7364 5.8107 2.6784 29 1 2.3758 5.6370 1.5438 30 1 2.5673 4.4851 2.8873 31 1 4.0827 5.7721 -0.0574 32 1 5.6941 6.1652 1.7189 33 1 6.5637 4.7240 1.1402 34 1 6.8585 5.7935 -1.0779 35 1 5.9887 7.2345 -0.4984 36 1 8.9699 8.6062 -2.1697 37 1 2.2564 4.4158 -1.1225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273287544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:44 Heat of formation + Delta-G solvation = 62.655110 kcal Electronic energy + Delta-G solvation = -16241.371285 eV Core-core repulsion = 13633.897097 eV Total energy + Delta-G solvation = -2607.474188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07291 -36.75554 -34.41900 -33.17744 -31.26249 -30.18725 -28.50281 -27.58565 -24.33329 -23.70320 -22.32005 -20.92527 -20.20510 -19.46179 -16.93529 -16.23001 -15.50873 -14.93920 -14.42938 -14.33524 -14.19609 -14.03629 -13.74380 -12.81477 -12.58691 -12.41882 -12.39075 -12.28177 -12.12821 -11.68930 -11.34389 -11.23605 -10.99997 -10.90630 -10.49503 -10.23055 -9.97127 -9.34438 -9.25786 -9.08914 -8.31840 -8.18328 -7.66227 -5.95674 -3.97949 2.02955 2.57731 3.03968 3.33693 3.40951 3.44918 4.35929 4.48042 4.72283 4.82579 4.94123 4.99594 5.14770 5.28925 5.40249 5.44850 5.48702 5.52637 5.62374 5.78837 5.84558 5.95170 6.14003 6.22892 6.42430 6.45190 6.54653 6.86331 7.05390 7.12324 7.59115 7.79694 7.87206 7.91711 8.05845 8.15968 8.49053 9.09916 9.65618 11.15778 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053317 B = 0.003855 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.030893 B = 7261.902761 C = 7392.208671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.380 5.380 4 C 0.045 3.955 5 C -0.205 4.205 6 C 0.158 3.842 7 H 0.076 0.924 8 C -0.174 4.174 9 N -0.683 5.683 10 C 0.067 3.933 11 C 0.025 3.975 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.069 3.931 21 N -0.304 5.304 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.336 0.664 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -14.049 6.387 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 N -0.163 5.163 4 C -0.100 4.100 5 C -0.217 4.217 6 C 0.046 3.954 7 H 0.094 0.906 8 C -0.233 4.233 9 N -0.313 5.313 10 C -0.061 4.061 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.117 4.117 21 N -0.125 5.125 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.185 0.815 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.154 0.846 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.139 -15.203 5.111 22.055 hybrid contribution 1.208 1.445 1.502 2.409 sum -13.931 -13.758 6.614 20.666 Atomic orbital electron populations 1.22048 0.94100 1.02510 1.03533 1.21577 0.95790 0.78024 1.03412 1.48543 1.36150 1.09942 1.21700 1.22201 0.96385 0.94627 0.96811 1.20065 1.06167 0.94607 1.00882 1.19702 0.92564 0.92331 0.90820 0.90579 1.22469 1.00405 1.00165 1.00248 1.60601 1.07237 1.26688 1.36736 1.22163 0.89040 0.97445 0.97418 1.19070 0.94272 0.93933 0.94005 1.21227 1.05596 1.30045 0.98989 0.92746 1.25006 0.98101 0.96450 0.94870 1.69985 1.37796 1.37523 1.07946 0.86550 0.83653 0.78658 0.79203 1.19788 1.21028 1.21067 1.23669 0.94973 0.97213 0.95844 1.77268 1.24602 0.97047 1.13571 0.91112 0.91008 0.92223 0.90115 0.89018 0.81524 0.92443 0.92604 0.92861 0.84645 0.96634 0.92507 0.95685 0.96820 0.93091 0.80333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 10.10 37.16 0.38 -0.84 16 2 C 0.13 1.09 7.23 -4.04 -0.03 1.06 16 3 N -0.38 -4.70 3.68 -61.37 -0.23 -4.92 16 4 C 0.05 0.56 11.36 -17.22 -0.20 0.36 16 5 C -0.21 -2.91 5.09 -105.05 -0.54 -3.45 16 6 C 0.16 2.31 3.02 -68.86 -0.21 2.10 16 7 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 8 C -0.17 -2.25 9.14 37.16 0.34 -1.91 16 9 N -0.68 -12.22 5.99 -107.95 -0.65 -12.86 16 10 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 11 C 0.02 0.65 5.23 -27.89 -0.15 0.50 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 C 0.07 1.03 11.66 -17.36 -0.20 0.82 16 21 N -0.30 -4.54 12.42 30.62 0.38 -4.16 16 22 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 27 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.06 0.78 7.45 -51.93 -0.39 0.39 16 29 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.34 5.79 8.47 -39.30 -0.33 5.46 16 32 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 33 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -32.61 313.63 -7.20 -39.81 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.12 Total: 0.66 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.03 Total: -13.58 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.24 Total: -48.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.61 -7.20 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273287544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.461 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds