Wall clock time and date at job start Sun Mar 29 2020 21:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46501 * 109.46909 * 2 1
4 4 C 1.34956 * 126.03564 * 125.31386 * 3 2 1
5 5 C 1.35312 * 107.74561 * 180.14539 * 4 3 2
6 6 C 1.50699 * 126.03995 * 179.87094 * 5 4 3
7 7 H 1.09002 * 109.46959 * 19.71343 * 6 5 4
8 8 C 1.53000 * 109.47083 * 259.71128 * 6 5 4
9 9 N 1.46901 * 109.47121 * 139.71585 * 6 5 4
10 10 C 1.46903 * 110.99880 * 205.00533 * 9 6 5
11 11 C 1.52999 * 109.47276 * 180.02562 * 10 9 6
12 12 C 1.50696 * 109.47268 * 179.97438 * 11 10 9
13 13 H 1.07999 * 119.99739 * 359.97438 * 12 11 10
14 14 C 1.37873 * 120.00032 * 179.97438 * 12 11 10
15 15 N 1.31515 * 120.00130 * 0.02562 * 14 12 11
16 16 Si 1.86803 * 120.00265 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.47047 * 0.02562 * 16 14 12
18 18 H 1.48507 * 109.46822 * 119.99766 * 16 14 12
19 19 H 1.48494 * 109.47325 * 240.00185 * 16 14 12
20 20 C 1.39872 * 107.91993 * 359.60625 * 5 4 3
21 21 N 1.30836 * 108.20164 * 0.24414 * 20 5 4
22 22 H 1.09010 * 109.46812 * 59.99889 * 1 2 3
23 23 H 1.09001 * 109.47134 * 179.97438 * 1 2 3
24 24 H 1.09003 * 109.47071 * 300.00257 * 1 2 3
25 25 H 1.08997 * 109.47003 * 240.00471 * 2 1 3
26 26 H 1.08996 * 109.47042 * 120.00251 * 2 1 3
27 27 H 1.08001 * 126.12620 * 359.97438 * 4 3 2
28 28 H 1.09001 * 109.47194 * 179.97438 * 8 6 5
29 29 H 1.08992 * 109.47399 * 299.99938 * 8 6 5
30 30 H 1.09004 * 109.46724 * 60.00424 * 8 6 5
31 31 H 1.00892 * 111.00435 * 81.04369 * 9 6 5
32 32 H 1.09003 * 109.46525 * 299.99167 * 10 9 6
33 33 H 1.08991 * 109.47692 * 59.99249 * 10 9 6
34 34 H 1.09003 * 109.46846 * 299.99603 * 11 10 9
35 35 H 1.09006 * 109.47089 * 59.99482 * 11 10 9
36 36 H 0.97004 * 120.00542 * 179.97438 * 15 14 12
37 37 H 1.08000 * 125.89961 * 180.22194 * 20 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.8777 1.9195 0.8905
5 6 3.0719 3.2135 0.5459
6 6 3.9559 4.1995 1.2652
7 1 4.6772 3.6602 1.8792
8 6 3.0971 5.0978 2.1577
9 7 4.6698 5.0251 0.2821
10 6 5.9196 5.5526 0.8460
11 6 6.6331 6.4058 -0.2047
12 6 7.9148 6.9473 0.3740
13 1 8.1925 6.7073 1.3897
14 6 8.7329 7.7491 -0.3932
15 7 8.3945 8.0418 -1.6299
16 14 10.3214 8.4211 0.3243
17 1 10.4707 7.9492 1.7243
18 1 11.4713 7.9421 -0.4843
19 1 10.2853 9.9054 0.3029
20 6 2.3121 3.4726 -0.5995
21 7 1.6801 2.3750 -0.9276
22 1 -0.3633 0.5139 -0.8901
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8933 -0.5137 -0.8900
26 1 1.8933 -0.5139 0.8899
27 1 3.3274 1.4096 1.7297
28 1 3.7364 5.8107 2.6784
29 1 2.3758 5.6370 1.5438
30 1 2.5673 4.4851 2.8873
31 1 4.0827 5.7721 -0.0574
32 1 5.6941 6.1652 1.7189
33 1 6.5637 4.7240 1.1402
34 1 6.8585 5.7935 -1.0779
35 1 5.9887 7.2345 -0.4984
36 1 8.9699 8.6062 -2.1697
37 1 2.2564 4.4158 -1.1225
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273287544.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:42:43
Heat of formation + Delta-G solvation = 41.027884 kcal
Electronic energy + Delta-G solvation = -16242.309112 eV
Core-core repulsion = 13633.897097 eV
Total energy + Delta-G solvation = -2608.412015 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.06999 -38.11791 -35.56653 -34.90073 -32.89556 -31.15892 -29.89640 -28.88660
-26.07799 -24.64801 -23.53848 -22.49892 -21.42575 -20.52480 -18.48232 -17.82724
-16.58464 -16.32969 -16.15987 -15.57771 -15.38012 -15.17269 -14.68999 -14.28552
-14.04092 -13.81797 -13.50160 -13.25212 -13.04760 -12.92420 -12.83893 -12.73707
-12.39349 -12.28929 -12.08925 -11.92130 -11.40097 -11.27675 -11.15464 -10.54588
-10.25365 -9.27648 -9.04479 -8.17547 -6.28852 1.05292 1.41894 1.42477
1.55807 1.74681 1.95211 2.42821 3.15896 3.45170 3.74227 4.07348
4.13422 4.16646 4.33334 4.36398 4.44004 4.51762 4.61431 4.70872
4.73498 4.84393 4.85812 4.99973 5.13665 5.15405 5.20587 5.25982
5.36729 5.50475 5.73939 5.80086 5.84378 6.20241 6.26220 6.41826
6.65861 6.85393 6.89720 7.40419 8.94837
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.053317 B = 0.003855 C = 0.003787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 525.030893 B = 7261.902761 C = 7392.208671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.122 3.878
3 N -0.377 5.377
4 C 0.057 3.943
5 C -0.229 4.229
6 C 0.163 3.837
7 H 0.080 0.920
8 C -0.166 4.166
9 N -0.691 5.691
10 C 0.088 3.912
11 C 0.031 3.969
12 C -0.541 4.541
13 H 0.062 0.938
14 C -0.002 4.002
15 N -0.933 5.933
16 Si 0.967 3.033
17 H -0.260 1.260
18 H -0.279 1.279
19 H -0.278 1.278
20 C 0.052 3.948
21 N -0.334 5.334
22 H 0.046 0.954
23 H 0.099 0.901
24 H 0.054 0.946
25 H 0.085 0.915
26 H 0.127 0.873
27 H 0.205 0.795
28 H 0.049 0.951
29 H 0.053 0.947
30 H 0.072 0.928
31 H 0.337 0.663
32 H 0.022 0.978
33 H 0.056 0.944
34 H -0.010 1.010
35 H -0.010 1.010
36 H 0.263 0.737
37 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.443 -15.465 8.394 22.764
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.002 3.998
3 N -0.160 5.160
4 C -0.090 4.090
5 C -0.241 4.241
6 C 0.052 3.948
7 H 0.098 0.902
8 C -0.225 4.225
9 N -0.321 5.321
10 C -0.041 4.041
11 C -0.006 4.006
12 C -0.580 4.580
13 H 0.080 0.920
14 C -0.200 4.200
15 N -0.574 5.574
16 Si 0.792 3.208
17 H -0.184 1.184
18 H -0.205 1.205
19 H -0.204 1.204
20 C -0.133 4.133
21 N -0.156 5.156
22 H 0.065 0.935
23 H 0.118 0.882
24 H 0.073 0.927
25 H 0.103 0.897
26 H 0.145 0.855
27 H 0.221 0.779
28 H 0.068 0.932
29 H 0.073 0.927
30 H 0.091 0.909
31 H 0.155 0.845
32 H 0.041 0.959
33 H 0.075 0.925
34 H 0.009 0.991
35 H 0.009 0.991
36 H 0.072 0.928
37 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -14.954 -16.641 7.123 23.479
hybrid contribution 1.065 1.785 0.844 2.243
sum -13.889 -14.856 7.966 21.841
Atomic orbital electron populations
1.22000 0.93610 1.03882 1.02070 1.22014 0.96276 0.76125 1.05370
1.48928 1.35541 1.10785 1.20757 1.22735 0.95202 0.93987 0.97039
1.20067 1.07057 0.95605 1.01381 1.19694 0.92678 0.92133 0.90316
0.90175 1.22371 1.00021 0.99887 1.00176 1.60507 1.06795 1.26769
1.38057 1.21756 0.90102 0.96559 0.95686 1.18926 0.94100 0.93370
0.94235 1.21667 1.06565 1.30281 0.99468 0.91997 1.25998 1.02076
0.96701 0.95179 1.70126 1.39445 1.38282 1.09499 0.85367 0.78614
0.77964 0.78886 1.18376 1.20513 1.20378 1.23770 0.95594 0.97452
0.96507 1.77205 1.25544 0.97786 1.15056 0.93454 0.88209 0.92733
0.89710 0.85490 0.77862 0.93184 0.92746 0.90902 0.84511 0.95944
0.92530 0.99133 0.99118 0.92834 0.80599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.02 10.10 71.98 0.73 -1.30 16
2 C 0.12 1.67 7.23 86.38 0.62 2.30 16
3 N -0.38 -8.63 3.68 -348.06 -1.28 -9.91 16
4 C 0.06 1.26 11.36 83.54 0.95 2.21 16
5 C -0.23 -6.23 5.09 -20.14 -0.10 -6.34 16
6 C 0.16 4.58 3.02 44.17 0.13 4.72 16
7 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16
8 C -0.17 -4.04 9.14 71.98 0.66 -3.38 16
9 N -0.69 -24.85 5.99 -495.45 -2.97 -27.82 16
10 C 0.09 3.71 5.42 86.30 0.47 4.17 16
11 C 0.03 1.69 5.23 29.85 0.16 1.85 16
12 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16
13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16
14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16
15 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16
16 Si 0.97 44.72 29.54 68.60 2.03 46.74 16
17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16
18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
20 C 0.05 1.55 11.66 85.24 0.99 2.54 16
21 N -0.33 -9.90 12.42 -57.02 -0.71 -10.61 16
22 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16
23 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
26 H 0.13 0.87 8.07 -2.39 -0.02 0.85 16
27 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16
28 H 0.05 1.29 7.45 -2.39 -0.02 1.27 16
29 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16
30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
31 H 0.34 11.91 8.47 -89.70 -0.76 11.15 16
32 H 0.02 0.91 7.44 -2.39 -0.02 0.89 16
33 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16
34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
35 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16
36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16
37 H 0.18 5.02 8.06 -2.91 -0.02 5.00 16
Total: -1.00 -71.20 313.63 2.93 -68.27
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: 0.27 Total: 14.93 kcal
Atomic # 6 Polarization: -29.22 SS G_CDS: 5.30 Total: -23.92 kcal
Atomic # 7 Polarization: -101.36 SS G_CDS: -4.67 Total: -106.03 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal
Total: -71.20 2.93 -68.27 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273287544.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.301 kcal
(2) G-P(sol) polarization free energy of solvation -71.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds