Wall clock time and date at job start Sun Mar 29 2020 21:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46909 * 2 1 4 4 C 1.34956 * 126.03564 * 125.31386 * 3 2 1 5 5 C 1.35312 * 107.74561 * 180.14539 * 4 3 2 6 6 C 1.50699 * 126.03995 * 179.87094 * 5 4 3 7 7 H 1.09002 * 109.46959 * 19.71343 * 6 5 4 8 8 C 1.53000 * 109.47083 * 259.71128 * 6 5 4 9 9 N 1.46901 * 109.47121 * 139.71585 * 6 5 4 10 10 C 1.46903 * 110.99880 * 205.00533 * 9 6 5 11 11 C 1.52999 * 109.47276 * 180.02562 * 10 9 6 12 12 C 1.50696 * 109.47268 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99739 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00032 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00130 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00265 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47047 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46822 * 119.99766 * 16 14 12 19 19 H 1.48494 * 109.47325 * 240.00185 * 16 14 12 20 20 C 1.39872 * 107.91993 * 359.60625 * 5 4 3 21 21 N 1.30836 * 108.20164 * 0.24414 * 20 5 4 22 22 H 1.09010 * 109.46812 * 59.99889 * 1 2 3 23 23 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47071 * 300.00257 * 1 2 3 25 25 H 1.08997 * 109.47003 * 240.00471 * 2 1 3 26 26 H 1.08996 * 109.47042 * 120.00251 * 2 1 3 27 27 H 1.08001 * 126.12620 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 29 29 H 1.08992 * 109.47399 * 299.99938 * 8 6 5 30 30 H 1.09004 * 109.46724 * 60.00424 * 8 6 5 31 31 H 1.00892 * 111.00435 * 81.04369 * 9 6 5 32 32 H 1.09003 * 109.46525 * 299.99167 * 10 9 6 33 33 H 1.08991 * 109.47692 * 59.99249 * 10 9 6 34 34 H 1.09003 * 109.46846 * 299.99603 * 11 10 9 35 35 H 1.09006 * 109.47089 * 59.99482 * 11 10 9 36 36 H 0.97004 * 120.00542 * 179.97438 * 15 14 12 37 37 H 1.08000 * 125.89961 * 180.22194 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8777 1.9195 0.8905 5 6 3.0719 3.2135 0.5459 6 6 3.9559 4.1995 1.2652 7 1 4.6772 3.6602 1.8792 8 6 3.0971 5.0978 2.1577 9 7 4.6698 5.0251 0.2821 10 6 5.9196 5.5526 0.8460 11 6 6.6331 6.4058 -0.2047 12 6 7.9148 6.9473 0.3740 13 1 8.1925 6.7073 1.3897 14 6 8.7329 7.7491 -0.3932 15 7 8.3945 8.0418 -1.6299 16 14 10.3214 8.4211 0.3243 17 1 10.4707 7.9492 1.7243 18 1 11.4713 7.9421 -0.4843 19 1 10.2853 9.9054 0.3029 20 6 2.3121 3.4726 -0.5995 21 7 1.6801 2.3750 -0.9276 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.3274 1.4096 1.7297 28 1 3.7364 5.8107 2.6784 29 1 2.3758 5.6370 1.5438 30 1 2.5673 4.4851 2.8873 31 1 4.0827 5.7721 -0.0574 32 1 5.6941 6.1652 1.7189 33 1 6.5637 4.7240 1.1402 34 1 6.8585 5.7935 -1.0779 35 1 5.9887 7.2345 -0.4984 36 1 8.9699 8.6062 -2.1697 37 1 2.2564 4.4158 -1.1225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273287544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:43 Heat of formation + Delta-G solvation = 41.027884 kcal Electronic energy + Delta-G solvation = -16242.309112 eV Core-core repulsion = 13633.897097 eV Total energy + Delta-G solvation = -2608.412015 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.06999 -38.11791 -35.56653 -34.90073 -32.89556 -31.15892 -29.89640 -28.88660 -26.07799 -24.64801 -23.53848 -22.49892 -21.42575 -20.52480 -18.48232 -17.82724 -16.58464 -16.32969 -16.15987 -15.57771 -15.38012 -15.17269 -14.68999 -14.28552 -14.04092 -13.81797 -13.50160 -13.25212 -13.04760 -12.92420 -12.83893 -12.73707 -12.39349 -12.28929 -12.08925 -11.92130 -11.40097 -11.27675 -11.15464 -10.54588 -10.25365 -9.27648 -9.04479 -8.17547 -6.28852 1.05292 1.41894 1.42477 1.55807 1.74681 1.95211 2.42821 3.15896 3.45170 3.74227 4.07348 4.13422 4.16646 4.33334 4.36398 4.44004 4.51762 4.61431 4.70872 4.73498 4.84393 4.85812 4.99973 5.13665 5.15405 5.20587 5.25982 5.36729 5.50475 5.73939 5.80086 5.84378 6.20241 6.26220 6.41826 6.65861 6.85393 6.89720 7.40419 8.94837 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.053317 B = 0.003855 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.030893 B = 7261.902761 C = 7392.208671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.122 3.878 3 N -0.377 5.377 4 C 0.057 3.943 5 C -0.229 4.229 6 C 0.163 3.837 7 H 0.080 0.920 8 C -0.166 4.166 9 N -0.691 5.691 10 C 0.088 3.912 11 C 0.031 3.969 12 C -0.541 4.541 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.967 3.033 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.278 1.278 20 C 0.052 3.948 21 N -0.334 5.334 22 H 0.046 0.954 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.127 0.873 27 H 0.205 0.795 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.337 0.663 32 H 0.022 0.978 33 H 0.056 0.944 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.263 0.737 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 -15.465 8.394 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.090 4.090 5 C -0.241 4.241 6 C 0.052 3.948 7 H 0.098 0.902 8 C -0.225 4.225 9 N -0.321 5.321 10 C -0.041 4.041 11 C -0.006 4.006 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.133 4.133 21 N -0.156 5.156 22 H 0.065 0.935 23 H 0.118 0.882 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.145 0.855 27 H 0.221 0.779 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.954 -16.641 7.123 23.479 hybrid contribution 1.065 1.785 0.844 2.243 sum -13.889 -14.856 7.966 21.841 Atomic orbital electron populations 1.22000 0.93610 1.03882 1.02070 1.22014 0.96276 0.76125 1.05370 1.48928 1.35541 1.10785 1.20757 1.22735 0.95202 0.93987 0.97039 1.20067 1.07057 0.95605 1.01381 1.19694 0.92678 0.92133 0.90316 0.90175 1.22371 1.00021 0.99887 1.00176 1.60507 1.06795 1.26769 1.38057 1.21756 0.90102 0.96559 0.95686 1.18926 0.94100 0.93370 0.94235 1.21667 1.06565 1.30281 0.99468 0.91997 1.25998 1.02076 0.96701 0.95179 1.70126 1.39445 1.38282 1.09499 0.85367 0.78614 0.77964 0.78886 1.18376 1.20513 1.20378 1.23770 0.95594 0.97452 0.96507 1.77205 1.25544 0.97786 1.15056 0.93454 0.88209 0.92733 0.89710 0.85490 0.77862 0.93184 0.92746 0.90902 0.84511 0.95944 0.92530 0.99133 0.99118 0.92834 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 10.10 71.98 0.73 -1.30 16 2 C 0.12 1.67 7.23 86.38 0.62 2.30 16 3 N -0.38 -8.63 3.68 -348.06 -1.28 -9.91 16 4 C 0.06 1.26 11.36 83.54 0.95 2.21 16 5 C -0.23 -6.23 5.09 -20.14 -0.10 -6.34 16 6 C 0.16 4.58 3.02 44.17 0.13 4.72 16 7 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 8 C -0.17 -4.04 9.14 71.98 0.66 -3.38 16 9 N -0.69 -24.85 5.99 -495.45 -2.97 -27.82 16 10 C 0.09 3.71 5.42 86.30 0.47 4.17 16 11 C 0.03 1.69 5.23 29.85 0.16 1.85 16 12 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 16 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 C 0.05 1.55 11.66 85.24 0.99 2.54 16 21 N -0.33 -9.90 12.42 -57.02 -0.71 -10.61 16 22 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.13 0.87 8.07 -2.39 -0.02 0.85 16 27 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.05 1.29 7.45 -2.39 -0.02 1.27 16 29 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.34 11.91 8.47 -89.70 -0.76 11.15 16 32 H 0.02 0.91 7.44 -2.39 -0.02 0.89 16 33 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.18 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -71.20 313.63 2.93 -68.27 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.27 Total: 14.93 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 5.30 Total: -23.92 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.67 Total: -106.03 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.20 2.93 -68.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273287544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.301 kcal (2) G-P(sol) polarization free energy of solvation -71.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds