Wall clock time and date at job start Sun Mar 29 2020 21:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 2 7 7 C 1.34952 * 126.03507 * 124.71127 * 6 5 4 8 8 C 1.35321 * 107.74171 * 179.84160 * 7 6 5 9 9 C 1.39870 * 107.92070 * 0.42711 * 8 7 6 10 10 N 1.30844 * 108.20163 * 359.73659 * 9 8 7 11 11 N 1.46898 * 109.47328 * 239.99829 * 2 1 3 12 12 C 1.46900 * 110.99928 * 85.00050 * 11 2 1 13 13 C 1.52999 * 109.47217 * 180.02562 * 12 11 2 14 14 C 1.50697 * 109.47418 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99951 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00264 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00021 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47548 * 89.99436 * 18 16 14 20 20 H 1.48504 * 109.47157 * 209.99672 * 18 16 14 21 21 H 1.48503 * 109.47064 * 329.99301 * 18 16 14 22 22 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 24 24 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 25 25 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 26 26 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 29 29 H 1.07999 * 126.12884 * 0.02562 * 7 6 5 30 30 H 1.08001 * 126.03833 * 180.16307 * 8 7 6 31 31 H 1.07993 * 125.89848 * 179.71480 * 9 8 7 32 32 H 1.00901 * 110.99566 * 321.04477 * 11 2 1 33 33 H 1.09002 * 109.47105 * 300.00194 * 12 11 2 34 34 H 1.09001 * 109.47267 * 59.99559 * 12 11 2 35 35 H 1.09002 * 109.47054 * 299.99996 * 13 12 11 36 36 H 1.08999 * 109.47041 * 59.99494 * 13 12 11 37 37 H 0.96999 * 120.00047 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 4.9753 -2.2893 2.5365 8 6 5.1503 -2.6552 3.8275 9 6 4.2992 -1.8737 4.6156 10 7 3.6410 -1.0635 3.8267 11 7 2.0198 -0.6925 -1.1994 12 6 2.0826 0.2226 -2.3468 13 6 2.5952 -0.5332 -3.5744 14 6 2.6602 0.4056 -4.7514 15 1 2.3651 1.4381 -4.6356 16 6 3.0956 -0.0536 -5.9763 17 7 3.4546 -1.3109 -6.1175 18 14 3.1769 1.1103 -7.4351 19 1 4.5138 1.7550 -7.4801 20 1 2.9524 0.3481 -8.6896 21 1 2.1289 2.1532 -7.2953 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6053 -0.2616 2.1370 26 1 1.7517 -1.7715 1.2057 27 1 3.9995 -1.0727 0.4261 28 1 3.8532 0.4370 1.3574 29 1 5.4846 -2.7081 1.6812 30 1 5.8247 -3.4191 4.1855 31 1 4.2019 -1.9296 5.6897 32 1 1.4496 -1.4980 -1.4099 33 1 1.0872 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1181 35 1 3.5905 -0.9272 -3.3690 36 1 1.9185 -1.3566 -3.8029 37 1 3.7612 -1.6339 -6.9792 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273311764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:28 Heat of formation + Delta-G solvation = 58.286449 kcal Electronic energy + Delta-G solvation = -16208.117481 eV Core-core repulsion = 13600.453853 eV Total energy + Delta-G solvation = -2607.663627 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.03923 -37.52959 -34.23629 -33.02158 -31.33490 -30.07141 -28.51368 -27.84732 -24.35947 -23.61973 -21.07979 -20.77487 -20.61932 -20.13588 -17.07706 -16.42015 -15.50470 -15.15244 -14.59727 -14.45899 -14.28929 -13.99986 -13.46551 -13.07747 -12.72743 -12.68007 -12.43998 -12.33648 -11.84059 -11.35800 -11.22926 -11.11888 -10.95615 -10.73255 -10.58225 -10.51560 -10.07600 -9.41029 -9.37248 -9.18329 -8.55551 -8.39214 -7.89135 -6.03576 -4.06298 1.96912 2.61824 2.87081 3.29530 3.35924 3.38813 4.39539 4.55700 4.66483 4.88475 4.94040 5.13891 5.22387 5.32592 5.41111 5.45494 5.56352 5.61360 5.74898 5.83007 5.92555 6.00868 6.08311 6.13308 6.23065 6.33341 6.41789 6.68889 6.92562 7.09185 7.41634 7.68225 7.75713 7.76453 7.89401 8.03075 8.39289 9.00990 9.57887 11.07769 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034289 B = 0.004096 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.382790 B = 6834.358917 C = 7387.207900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.112 4.112 5 C 0.136 3.864 6 N -0.364 5.364 7 C 0.058 3.942 8 C -0.286 4.286 9 C 0.036 3.964 10 N -0.301 5.301 11 N -0.689 5.689 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.174 0.826 30 H 0.143 0.857 31 H 0.178 0.822 32 H 0.338 0.662 33 H 0.017 0.983 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.013 0.987 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -1.178 17.022 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.151 4.151 5 C 0.016 3.984 6 N -0.146 5.146 7 C -0.089 4.089 8 C -0.315 4.315 9 C -0.150 4.150 10 N -0.123 5.123 11 N -0.319 5.319 12 C -0.063 4.063 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.191 0.809 30 H 0.161 0.839 31 H 0.195 0.805 32 H 0.156 0.844 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.518 -0.202 16.839 16.848 hybrid contribution -0.238 -0.043 -1.089 1.115 sum -0.756 -0.245 15.750 15.770 Atomic orbital electron populations 1.22456 0.97264 1.02019 1.02060 1.21513 0.92632 0.98061 0.90763 0.90488 1.21808 0.93690 1.01736 0.97866 1.21857 0.96117 0.97566 0.82890 1.48985 1.30973 1.28456 1.06177 1.22675 0.94228 0.92312 0.99689 1.21477 1.09121 1.08612 0.92320 1.23818 0.95971 0.95246 0.99960 1.77285 1.23352 1.24155 0.87555 1.60748 1.56385 1.10348 1.04467 1.22186 0.98308 0.95209 0.90568 1.19064 0.96922 0.95295 0.89933 1.21171 1.44032 0.96367 0.94557 0.92789 1.24998 0.95367 0.95093 0.98875 1.69969 1.44423 1.14330 1.24518 0.86592 0.78419 0.80871 0.82103 1.20614 1.21210 1.19926 0.92578 0.92527 0.92242 0.90974 0.91581 0.86806 0.90279 0.80920 0.83899 0.80503 0.84429 0.96495 0.92398 0.95746 0.96842 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.16 37.16 0.34 -1.85 16 2 C 0.08 1.08 2.59 -67.71 -0.18 0.90 16 3 H 0.08 1.04 7.80 -51.93 -0.40 0.64 16 4 C -0.11 -1.38 5.08 -26.73 -0.14 -1.52 16 5 C 0.14 1.70 6.40 -4.04 -0.03 1.68 16 6 N -0.36 -4.82 3.68 -61.36 -0.23 -5.04 16 7 C 0.06 0.68 11.45 -17.22 -0.20 0.48 16 8 C -0.29 -3.13 10.80 -40.01 -0.43 -3.56 16 9 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16 10 N -0.30 -4.23 12.42 30.62 0.38 -3.85 16 11 N -0.69 -11.09 5.70 -106.72 -0.61 -11.70 16 12 C 0.07 1.30 5.42 -3.82 -0.02 1.28 16 13 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.78 7.45 -51.93 -0.39 0.40 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.11 1.46 7.68 -51.93 -0.40 1.06 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.34 5.41 8.47 -39.29 -0.33 5.08 16 33 H 0.02 0.33 7.44 -51.93 -0.39 -0.05 16 34 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 35 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -30.74 312.77 -7.53 -38.27 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.10 Total: 2.23 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.41 Total: -15.22 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.28 Total: -46.41 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.74 -7.53 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273311764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.561 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds