Wall clock time and date at job start Sun Mar 29 2020 21:41:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09002 * 109.46824 * 2 1
4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3
5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1
6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 2
7 7 C 1.34952 * 126.03507 * 124.71127 * 6 5 4
8 8 C 1.35321 * 107.74171 * 179.84160 * 7 6 5
9 9 C 1.39870 * 107.92070 * 0.42711 * 8 7 6
10 10 N 1.30844 * 108.20163 * 359.73659 * 9 8 7
11 11 N 1.46898 * 109.47328 * 239.99829 * 2 1 3
12 12 C 1.46900 * 110.99928 * 85.00050 * 11 2 1
13 13 C 1.52999 * 109.47217 * 180.02562 * 12 11 2
14 14 C 1.50697 * 109.47418 * 180.02562 * 13 12 11
15 15 H 1.08002 * 119.99951 * 359.97438 * 14 13 12
16 16 C 1.37871 * 120.00264 * 180.02562 * 14 13 12
17 17 N 1.31522 * 120.00021 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 120.00252 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.47548 * 89.99436 * 18 16 14
20 20 H 1.48504 * 109.47157 * 209.99672 * 18 16 14
21 21 H 1.48503 * 109.47064 * 329.99301 * 18 16 14
22 22 H 1.09002 * 109.46824 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47241 * 299.99897 * 1 2 3
24 24 H 1.08996 * 109.46751 * 60.00260 * 1 2 3
25 25 H 1.09002 * 109.47398 * 305.00335 * 4 2 1
26 26 H 1.09001 * 109.47194 * 65.00515 * 4 2 1
27 27 H 1.09002 * 109.47153 * 300.00319 * 5 4 2
28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 2
29 29 H 1.07999 * 126.12884 * 0.02562 * 7 6 5
30 30 H 1.08001 * 126.03833 * 180.16307 * 8 7 6
31 31 H 1.07993 * 125.89848 * 179.71480 * 9 8 7
32 32 H 1.00901 * 110.99566 * 321.04477 * 11 2 1
33 33 H 1.09002 * 109.47105 * 300.00194 * 12 11 2
34 34 H 1.09001 * 109.47267 * 59.99559 * 12 11 2
35 35 H 1.09002 * 109.47054 * 299.99996 * 13 12 11
36 36 H 1.08999 * 109.47041 * 59.99494 * 13 12 11
37 37 H 0.96999 * 120.00047 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5648 -0.6132 1.3138
6 7 4.0532 -1.3042 2.5097
7 6 4.9753 -2.2893 2.5365
8 6 5.1503 -2.6552 3.8275
9 6 4.2992 -1.8737 4.6156
10 7 3.6410 -1.0635 3.8267
11 7 2.0198 -0.6925 -1.1994
12 6 2.0826 0.2226 -2.3468
13 6 2.5952 -0.5332 -3.5744
14 6 2.6602 0.4056 -4.7514
15 1 2.3651 1.4381 -4.6356
16 6 3.0956 -0.0536 -5.9763
17 7 3.4546 -1.3109 -6.1175
18 14 3.1769 1.1103 -7.4351
19 1 4.5138 1.7550 -7.4801
20 1 2.9524 0.3481 -8.6896
21 1 2.1289 2.1532 -7.2953
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.6053 -0.2616 2.1370
26 1 1.7517 -1.7715 1.2057
27 1 3.9995 -1.0727 0.4261
28 1 3.8532 0.4370 1.3574
29 1 5.4846 -2.7081 1.6812
30 1 5.8247 -3.4191 4.1855
31 1 4.2019 -1.9296 5.6897
32 1 1.4496 -1.4980 -1.4099
33 1 1.0872 0.6163 -2.5525
34 1 2.7589 1.0462 -2.1181
35 1 3.5905 -0.9272 -3.3690
36 1 1.9185 -1.3566 -3.8029
37 1 3.7612 -1.6339 -6.9792
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273311764.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:41:28
Heat of formation + Delta-G solvation = 58.286449 kcal
Electronic energy + Delta-G solvation = -16208.117481 eV
Core-core repulsion = 13600.453853 eV
Total energy + Delta-G solvation = -2607.663627 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.03923 -37.52959 -34.23629 -33.02158 -31.33490 -30.07141 -28.51368 -27.84732
-24.35947 -23.61973 -21.07979 -20.77487 -20.61932 -20.13588 -17.07706 -16.42015
-15.50470 -15.15244 -14.59727 -14.45899 -14.28929 -13.99986 -13.46551 -13.07747
-12.72743 -12.68007 -12.43998 -12.33648 -11.84059 -11.35800 -11.22926 -11.11888
-10.95615 -10.73255 -10.58225 -10.51560 -10.07600 -9.41029 -9.37248 -9.18329
-8.55551 -8.39214 -7.89135 -6.03576 -4.06298 1.96912 2.61824 2.87081
3.29530 3.35924 3.38813 4.39539 4.55700 4.66483 4.88475 4.94040
5.13891 5.22387 5.32592 5.41111 5.45494 5.56352 5.61360 5.74898
5.83007 5.92555 6.00868 6.08311 6.13308 6.23065 6.33341 6.41789
6.68889 6.92562 7.09185 7.41634 7.68225 7.75713 7.76453 7.89401
8.03075 8.39289 9.00990 9.57887 11.07769
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.034289 B = 0.004096 C = 0.003789
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 816.382790 B = 6834.358917 C = 7387.207900
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.082 3.918
3 H 0.077 0.923
4 C -0.112 4.112
5 C 0.136 3.864
6 N -0.364 5.364
7 C 0.058 3.942
8 C -0.286 4.286
9 C 0.036 3.964
10 N -0.301 5.301
11 N -0.689 5.689
12 C 0.065 3.935
13 C 0.025 3.975
14 C -0.522 4.522
15 H 0.054 0.946
16 C 0.058 3.942
17 N -0.893 5.893
18 Si 0.892 3.108
19 H -0.280 1.280
20 H -0.286 1.286
21 H -0.274 1.274
22 H 0.055 0.945
23 H 0.056 0.944
24 H 0.059 0.941
25 H 0.072 0.928
26 H 0.065 0.935
27 H 0.114 0.886
28 H 0.079 0.921
29 H 0.174 0.826
30 H 0.143 0.857
31 H 0.178 0.822
32 H 0.338 0.662
33 H 0.017 0.983
34 H 0.058 0.942
35 H 0.024 0.976
36 H 0.013 0.987
37 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.332 -1.178 17.022 17.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.030 4.030
3 H 0.095 0.905
4 C -0.151 4.151
5 C 0.016 3.984
6 N -0.146 5.146
7 C -0.089 4.089
8 C -0.315 4.315
9 C -0.150 4.150
10 N -0.123 5.123
11 N -0.319 5.319
12 C -0.063 4.063
13 C -0.012 4.012
14 C -0.561 4.561
15 H 0.072 0.928
16 C -0.143 4.143
17 N -0.532 5.532
18 Si 0.720 3.280
19 H -0.206 1.206
20 H -0.212 1.212
21 H -0.199 1.199
22 H 0.074 0.926
23 H 0.075 0.925
24 H 0.078 0.922
25 H 0.090 0.910
26 H 0.084 0.916
27 H 0.132 0.868
28 H 0.097 0.903
29 H 0.191 0.809
30 H 0.161 0.839
31 H 0.195 0.805
32 H 0.156 0.844
33 H 0.035 0.965
34 H 0.076 0.924
35 H 0.043 0.957
36 H 0.032 0.968
37 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -0.518 -0.202 16.839 16.848
hybrid contribution -0.238 -0.043 -1.089 1.115
sum -0.756 -0.245 15.750 15.770
Atomic orbital electron populations
1.22456 0.97264 1.02019 1.02060 1.21513 0.92632 0.98061 0.90763
0.90488 1.21808 0.93690 1.01736 0.97866 1.21857 0.96117 0.97566
0.82890 1.48985 1.30973 1.28456 1.06177 1.22675 0.94228 0.92312
0.99689 1.21477 1.09121 1.08612 0.92320 1.23818 0.95971 0.95246
0.99960 1.77285 1.23352 1.24155 0.87555 1.60748 1.56385 1.10348
1.04467 1.22186 0.98308 0.95209 0.90568 1.19064 0.96922 0.95295
0.89933 1.21171 1.44032 0.96367 0.94557 0.92789 1.24998 0.95367
0.95093 0.98875 1.69969 1.44423 1.14330 1.24518 0.86592 0.78419
0.80871 0.82103 1.20614 1.21210 1.19926 0.92578 0.92527 0.92242
0.90974 0.91581 0.86806 0.90279 0.80920 0.83899 0.80503 0.84429
0.96495 0.92398 0.95746 0.96842 0.92972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.19 9.16 37.16 0.34 -1.85 16
2 C 0.08 1.08 2.59 -67.71 -0.18 0.90 16
3 H 0.08 1.04 7.80 -51.93 -0.40 0.64 16
4 C -0.11 -1.38 5.08 -26.73 -0.14 -1.52 16
5 C 0.14 1.70 6.40 -4.04 -0.03 1.68 16
6 N -0.36 -4.82 3.68 -61.36 -0.23 -5.04 16
7 C 0.06 0.68 11.45 -17.22 -0.20 0.48 16
8 C -0.29 -3.13 10.80 -40.01 -0.43 -3.56 16
9 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16
10 N -0.30 -4.23 12.42 30.62 0.38 -3.85 16
11 N -0.69 -11.09 5.70 -106.72 -0.61 -11.70 16
12 C 0.07 1.30 5.42 -3.82 -0.02 1.28 16
13 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16
14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16
15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16
16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
17 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16
18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16
19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16
21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
22 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
24 H 0.06 0.78 7.45 -51.93 -0.39 0.40 16
25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
27 H 0.11 1.46 7.68 -51.93 -0.40 1.06 16
28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
29 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16
30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16
31 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16
32 H 0.34 5.41 8.47 -39.29 -0.33 5.08 16
33 H 0.02 0.33 7.44 -51.93 -0.39 -0.05 16
34 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16
35 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
LS Contribution 312.77 15.07 4.71 4.71
Total: -1.00 -30.74 312.77 -7.53 -38.27
By element:
Atomic # 1 Polarization: 8.33 SS G_CDS: -6.10 Total: 2.23 kcal
Atomic # 6 Polarization: -13.80 SS G_CDS: -1.41 Total: -15.22 kcal
Atomic # 7 Polarization: -46.69 SS G_CDS: 0.28 Total: -46.41 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -30.74 -7.53 -38.27 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273311764.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.561 kcal
(2) G-P(sol) polarization free energy of solvation -30.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.286 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds