Wall clock time and date at job start Sun Mar 29 2020 21:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 2 7 7 C 1.34952 * 126.03507 * 124.71127 * 6 5 4 8 8 C 1.35321 * 107.74171 * 179.84160 * 7 6 5 9 9 C 1.39870 * 107.92070 * 0.42711 * 8 7 6 10 10 N 1.30844 * 108.20163 * 359.73659 * 9 8 7 11 11 N 1.46898 * 109.47328 * 239.99829 * 2 1 3 12 12 C 1.46900 * 110.99928 * 85.00050 * 11 2 1 13 13 C 1.52999 * 109.47217 * 180.02562 * 12 11 2 14 14 C 1.50697 * 109.47418 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99951 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00264 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00021 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00252 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47548 * 89.99436 * 18 16 14 20 20 H 1.48504 * 109.47157 * 209.99672 * 18 16 14 21 21 H 1.48503 * 109.47064 * 329.99301 * 18 16 14 22 22 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 24 24 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 25 25 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 26 26 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 27 27 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 29 29 H 1.07999 * 126.12884 * 0.02562 * 7 6 5 30 30 H 1.08001 * 126.03833 * 180.16307 * 8 7 6 31 31 H 1.07993 * 125.89848 * 179.71480 * 9 8 7 32 32 H 1.00901 * 110.99566 * 321.04477 * 11 2 1 33 33 H 1.09002 * 109.47105 * 300.00194 * 12 11 2 34 34 H 1.09001 * 109.47267 * 59.99559 * 12 11 2 35 35 H 1.09002 * 109.47054 * 299.99996 * 13 12 11 36 36 H 1.08999 * 109.47041 * 59.99494 * 13 12 11 37 37 H 0.96999 * 120.00047 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 4.9753 -2.2893 2.5365 8 6 5.1503 -2.6552 3.8275 9 6 4.2992 -1.8737 4.6156 10 7 3.6410 -1.0635 3.8267 11 7 2.0198 -0.6925 -1.1994 12 6 2.0826 0.2226 -2.3468 13 6 2.5952 -0.5332 -3.5744 14 6 2.6602 0.4056 -4.7514 15 1 2.3651 1.4381 -4.6356 16 6 3.0956 -0.0536 -5.9763 17 7 3.4546 -1.3109 -6.1175 18 14 3.1769 1.1103 -7.4351 19 1 4.5138 1.7550 -7.4801 20 1 2.9524 0.3481 -8.6896 21 1 2.1289 2.1532 -7.2953 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6053 -0.2616 2.1370 26 1 1.7517 -1.7715 1.2057 27 1 3.9995 -1.0727 0.4261 28 1 3.8532 0.4370 1.3574 29 1 5.4846 -2.7081 1.6812 30 1 5.8247 -3.4191 4.1855 31 1 4.2019 -1.9296 5.6897 32 1 1.4496 -1.4980 -1.4099 33 1 1.0872 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1181 35 1 3.5905 -0.9272 -3.3690 36 1 1.9185 -1.3566 -3.8029 37 1 3.7612 -1.6339 -6.9792 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273311764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:27 Heat of formation + Delta-G solvation = 38.973111 kcal Electronic energy + Delta-G solvation = -16208.954970 eV Core-core repulsion = 13600.453853 eV Total energy + Delta-G solvation = -2608.501117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93758 -38.76975 -35.78948 -34.59908 -32.83554 -31.02510 -29.89635 -29.11025 -26.05327 -24.84122 -22.48031 -22.00796 -21.64466 -21.23373 -18.51239 -17.97504 -16.71046 -16.55731 -16.28990 -15.78015 -15.31615 -15.12633 -14.63066 -14.35454 -13.97619 -13.94927 -13.75784 -13.50307 -13.12104 -12.98998 -12.83216 -12.54341 -12.32568 -12.20644 -11.93797 -11.80456 -11.50086 -11.36176 -11.16868 -10.55618 -10.32268 -9.46040 -9.24269 -8.19951 -6.30792 1.06250 1.40911 1.41730 1.52614 1.70876 2.01898 2.40684 3.13900 3.33290 3.62329 3.88524 4.07308 4.16601 4.29493 4.36321 4.45964 4.53618 4.57199 4.66208 4.71742 4.81911 4.93294 4.95667 5.06771 5.10326 5.17171 5.22486 5.24343 5.47377 5.70999 5.80627 5.84997 6.15656 6.19990 6.29612 6.55118 6.85430 6.87105 7.38569 8.91937 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034289 B = 0.004096 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.382790 B = 6834.358917 C = 7387.207900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.078 0.922 4 C -0.097 4.097 5 C 0.138 3.862 6 N -0.378 5.378 7 C 0.045 3.955 8 C -0.287 4.287 9 C 0.033 3.967 10 N -0.337 5.337 11 N -0.688 5.688 12 C 0.086 3.914 13 C 0.032 3.968 14 C -0.544 4.544 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.264 1.264 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.192 0.808 30 H 0.167 0.833 31 H 0.207 0.793 32 H 0.339 0.661 33 H 0.018 0.982 34 H 0.059 0.941 35 H -0.003 1.003 36 H -0.010 1.010 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -0.546 17.726 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.025 4.025 3 H 0.096 0.904 4 C -0.136 4.136 5 C 0.018 3.982 6 N -0.160 5.160 7 C -0.102 4.102 8 C -0.317 4.317 9 C -0.152 4.152 10 N -0.160 5.160 11 N -0.319 5.319 12 C -0.043 4.043 13 C -0.006 4.006 14 C -0.582 4.582 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.188 1.188 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.209 0.791 30 H 0.185 0.815 31 H 0.223 0.777 32 H 0.157 0.843 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.015 0.985 36 H 0.009 0.991 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.608 0.435 17.567 17.583 hybrid contribution -0.182 -0.303 -1.225 1.274 sum -0.790 0.132 16.342 16.362 Atomic orbital electron populations 1.22397 0.96101 1.02428 1.02411 1.21533 0.93533 0.97855 0.89576 0.90389 1.21640 0.93618 1.01160 0.97181 1.21774 0.96096 0.97521 0.82814 1.49042 1.31731 1.29187 1.06050 1.23175 0.94011 0.92019 1.00949 1.21848 1.09087 1.08780 0.91951 1.24411 0.95152 0.94332 1.01295 1.77235 1.24900 1.25717 0.88134 1.60637 1.57209 1.09932 1.04082 1.21775 0.97931 0.94856 0.89760 1.18920 0.95010 0.94735 0.91925 1.21628 1.43879 0.97016 0.95702 0.92260 1.25933 0.94867 0.96758 1.02079 1.70100 1.45303 1.16294 1.25406 0.85470 0.78850 0.78734 0.78121 1.19797 1.20828 1.18808 0.92185 0.90769 0.93245 0.90695 0.92105 0.87416 0.90336 0.79069 0.81515 0.77665 0.84302 0.96365 0.92268 0.98483 0.99149 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 9.16 71.98 0.66 -3.33 16 2 C 0.09 2.17 2.59 44.92 0.12 2.29 16 3 H 0.08 2.00 7.80 -2.39 -0.02 1.98 16 4 C -0.10 -2.30 5.08 30.59 0.16 -2.15 16 5 C 0.14 3.40 6.40 86.38 0.55 3.95 16 6 N -0.38 -9.72 3.68 -348.06 -1.28 -11.00 16 7 C 0.05 1.00 11.45 83.54 0.96 1.95 16 8 C -0.29 -5.76 10.80 21.99 0.24 -5.52 16 9 C 0.03 0.72 12.03 85.24 1.03 1.74 16 10 N -0.34 -9.13 12.42 -57.02 -0.71 -9.84 16 11 N -0.69 -21.94 5.70 -491.56 -2.80 -24.74 16 12 C 0.09 3.39 5.42 86.30 0.47 3.85 16 13 C 0.03 1.63 5.23 29.85 0.16 1.78 16 14 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.00 0.09 5.46 84.65 0.46 0.56 16 17 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H 0.06 1.32 8.13 -2.39 -0.02 1.31 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.23 7.45 -2.39 -0.02 1.22 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 2.75 7.68 -2.39 -0.02 2.73 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.34 10.81 8.47 -89.69 -0.76 10.05 16 33 H 0.02 0.71 7.44 -2.39 -0.02 0.70 16 34 H 0.06 2.32 8.06 -2.39 -0.02 2.31 16 35 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -65.57 312.77 2.81 -62.76 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.27 Total: 17.99 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.02 Total: -25.13 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.51 Total: -101.43 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.57 2.81 -62.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273311764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.735 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds