Wall clock time and date at job start Sun Mar 29 2020 21:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46919 * 2 1 4 4 C 1.53000 * 109.47184 * 240.00452 * 2 1 3 5 5 C 1.50704 * 109.47175 * 174.99938 * 4 2 1 6 6 H 1.07997 * 119.99678 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00192 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99790 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00191 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46830 * 89.99789 * 9 7 5 11 11 H 1.48496 * 109.46849 * 209.99781 * 9 7 5 12 12 H 1.48492 * 109.46848 * 329.99898 * 9 7 5 13 13 N 1.46897 * 109.47485 * 119.99906 * 2 1 3 14 14 C 1.46896 * 111.00386 * 252.68194 * 13 2 1 15 15 H 1.08995 * 109.47149 * 316.80105 * 14 13 2 16 16 C 1.53001 * 109.47061 * 76.79480 * 14 13 2 17 17 C 1.53002 * 109.47267 * 196.79538 * 14 13 2 18 18 N 1.46501 * 109.47067 * 65.00286 * 17 14 13 19 19 C 1.34946 * 126.03566 * 124.99509 * 18 17 14 20 20 C 1.35318 * 107.74053 * 179.97438 * 19 18 17 21 21 C 1.39867 * 107.92557 * 0.02562 * 20 19 18 22 22 N 1.30841 * 108.19787 * 359.73809 * 21 20 19 23 23 H 1.08993 * 109.47456 * 63.10374 * 1 2 3 24 24 H 1.09006 * 109.46422 * 183.10293 * 1 2 3 25 25 H 1.08997 * 109.46801 * 303.09959 * 1 2 3 26 26 H 1.09005 * 109.47089 * 294.99231 * 4 2 1 27 27 H 1.09002 * 109.47206 * 54.99533 * 4 2 1 28 28 H 0.97000 * 119.99915 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00071 * 128.73161 * 13 2 1 30 30 H 1.08999 * 109.47435 * 294.20168 * 16 14 13 31 31 H 1.09008 * 109.47249 * 54.20393 * 16 14 13 32 32 H 1.08999 * 109.47304 * 174.19766 * 16 14 13 33 33 H 1.09003 * 109.46608 * 185.00182 * 17 14 13 34 34 H 1.08997 * 109.46899 * 304.99895 * 17 14 13 35 35 H 1.08000 * 126.12874 * 359.95982 * 19 18 17 36 36 H 1.08008 * 126.03834 * 180.02562 * 20 19 18 37 37 H 1.08000 * 125.90161 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1924 -2.3584 8 7 3.5764 -1.8367 -3.3002 9 14 6.0921 -1.0599 -2.4374 10 1 6.7009 -2.2125 -1.7261 11 1 6.5289 -1.0672 -3.8567 12 1 6.5261 0.2052 -1.7923 13 7 2.0198 -0.6924 1.1994 14 6 2.5802 0.2612 2.1660 15 1 3.1941 0.9927 1.6406 16 6 1.4413 0.9794 2.8927 17 6 3.4408 -0.4903 3.1836 18 7 4.5978 -1.0789 2.5046 19 6 5.8927 -0.8897 2.8342 20 6 6.6474 -1.6041 1.9675 21 6 5.7843 -2.2515 1.0775 22 7 4.5552 -1.9416 1.4018 23 1 -0.3634 0.4649 -0.9164 24 1 -0.3632 -1.0263 0.0556 25 1 -0.3633 0.5612 0.8609 26 1 1.7518 -1.7715 -1.2057 27 1 1.6053 -0.2616 -2.1370 28 1 4.0608 -2.2433 -4.0356 29 1 2.6960 -1.4010 0.9571 30 1 0.8900 1.5969 2.1836 31 1 0.7689 0.2425 3.3323 32 1 1.8535 1.6103 3.6802 33 1 3.7840 0.2030 3.9515 34 1 2.8498 -1.2809 3.6458 35 1 6.2606 -0.2776 3.6444 36 1 7.7258 -1.6638 1.9637 37 1 6.0810 -2.8988 0.2654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276297811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:58 Heat of formation + Delta-G solvation = 73.778385 kcal Electronic energy + Delta-G solvation = -17813.474195 eV Core-core repulsion = 15206.482348 eV Total energy + Delta-G solvation = -2606.991847 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68676 -37.25836 -34.11211 -32.23734 -30.96099 -29.55460 -27.97231 -27.19669 -25.87360 -22.90190 -21.09935 -20.61953 -19.91176 -19.26405 -16.91149 -16.17355 -15.69678 -14.84952 -14.30569 -14.04731 -13.89754 -13.36574 -13.28659 -12.50075 -12.39456 -12.08739 -11.96427 -11.85704 -11.63119 -11.43670 -11.19218 -10.90161 -10.72577 -10.48606 -10.36971 -10.15025 -9.83960 -9.11415 -8.97266 -8.85420 -8.27008 -8.14120 -7.47572 -5.89750 -3.88961 2.37055 2.94817 3.31923 3.35238 3.44558 3.47256 4.53522 4.67114 4.91139 5.10714 5.30927 5.41214 5.47537 5.59428 5.65364 5.82071 5.96178 6.00076 6.05808 6.19164 6.25490 6.35199 6.43202 6.46070 6.55224 6.65928 6.98944 7.08007 7.16028 7.43569 7.62422 7.76290 8.08487 8.19186 8.22613 8.50243 8.71749 9.14573 9.73256 11.21939 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.013181 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.268021 B = 2123.775332 C = 3480.854434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.087 3.913 3 H 0.035 0.965 4 C 0.012 3.988 5 C -0.496 4.496 6 H 0.049 0.951 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.292 1.292 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.073 3.927 15 H 0.041 0.959 16 C -0.138 4.138 17 C 0.134 3.866 18 N -0.376 5.376 19 C 0.040 3.960 20 C -0.279 4.279 21 C 0.047 3.953 22 N -0.249 5.249 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.258 0.742 29 H 0.378 0.622 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 3.258 13.591 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.053 0.947 4 C -0.025 4.025 5 C -0.535 4.535 6 H 0.067 0.933 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.218 1.218 12 H -0.203 1.203 13 N -0.327 5.327 14 C -0.039 4.039 15 H 0.059 0.941 16 C -0.196 4.196 17 C 0.012 3.988 18 N -0.159 5.159 19 C -0.106 4.106 20 C -0.308 4.308 21 C -0.140 4.140 22 N -0.070 5.070 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.207 0.793 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.182 0.818 36 H 0.157 0.843 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.352 3.018 13.523 13.860 hybrid contribution 2.904 0.523 -0.469 2.987 sum 2.551 3.541 13.053 13.764 Atomic orbital electron populations 1.21849 0.97034 1.01014 0.99258 1.21609 0.93131 0.96234 0.91283 0.94722 1.19461 0.95826 0.95947 0.91280 1.21034 0.91716 1.33358 1.07365 0.93314 1.24889 0.97583 0.95556 0.95869 1.69968 1.35087 1.36444 1.12165 0.86806 0.86948 0.78567 0.76717 1.20096 1.21800 1.20309 1.60937 1.43733 1.14420 1.13643 1.21752 0.93968 0.94308 0.93833 0.94104 1.21814 0.98372 0.99819 0.99609 1.21949 0.85017 0.97579 0.94260 1.48905 1.05056 1.37196 1.24752 1.22389 0.84797 1.02098 1.01333 1.21431 1.00278 1.07956 1.01173 1.23885 0.90153 1.00441 0.99498 1.77199 1.21490 1.08495 0.99817 0.93741 0.93000 0.94310 0.95976 0.96403 0.93272 0.79282 0.92150 0.91865 0.93309 0.89006 0.89343 0.81758 0.84255 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.46 37.16 0.35 -2.16 16 2 C 0.09 1.91 2.24 -67.71 -0.15 1.75 16 3 H 0.03 0.78 7.31 -51.93 -0.38 0.40 16 4 C 0.01 0.33 4.38 -27.88 -0.12 0.21 16 5 C -0.50 -14.00 7.93 -34.44 -0.27 -14.27 16 6 H 0.05 1.39 7.65 -52.49 -0.40 0.99 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.88 22.08 29.02 -169.99 -4.93 17.14 16 10 H -0.27 -6.45 6.35 56.52 0.36 -6.09 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.69 -13.94 6.13 -99.74 -0.61 -14.55 16 14 C 0.07 1.21 2.73 -67.71 -0.18 1.03 16 15 H 0.04 0.78 7.64 -51.93 -0.40 0.38 16 16 C -0.14 -1.82 8.92 37.16 0.33 -1.49 16 17 C 0.13 1.89 6.13 -4.04 -0.02 1.86 16 18 N -0.38 -6.41 3.68 -61.36 -0.23 -6.64 16 19 C 0.04 0.59 11.45 -17.22 -0.20 0.39 16 20 C -0.28 -4.54 10.80 -40.01 -0.43 -4.97 16 21 C 0.05 0.92 11.58 -17.36 -0.20 0.72 16 22 N -0.25 -5.18 9.35 30.62 0.29 -4.89 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.64 6.78 -51.93 -0.35 0.29 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.38 8.58 4.18 -39.29 -0.16 8.42 16 30 H 0.06 0.85 6.87 -51.93 -0.36 0.49 16 31 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 1.90 8.06 -52.48 -0.42 1.47 16 37 H 0.18 3.41 7.22 -52.49 -0.38 3.03 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -31.90 300.24 -7.06 -38.96 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.83 Total: 7.26 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.00 Total: -15.26 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.19 Total: -52.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.93 Total: 17.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.90 -7.06 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276297811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.735 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds