Wall clock time and date at job start Sun Mar 29 2020 21:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46919 * 2 1 4 4 C 1.53000 * 109.47184 * 240.00452 * 2 1 3 5 5 C 1.50704 * 109.47175 * 174.99938 * 4 2 1 6 6 H 1.07997 * 119.99678 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00192 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99790 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00191 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46830 * 89.99789 * 9 7 5 11 11 H 1.48496 * 109.46849 * 209.99781 * 9 7 5 12 12 H 1.48492 * 109.46848 * 329.99898 * 9 7 5 13 13 N 1.46897 * 109.47485 * 119.99906 * 2 1 3 14 14 C 1.46896 * 111.00386 * 252.68194 * 13 2 1 15 15 H 1.08995 * 109.47149 * 316.80105 * 14 13 2 16 16 C 1.53001 * 109.47061 * 76.79480 * 14 13 2 17 17 C 1.53002 * 109.47267 * 196.79538 * 14 13 2 18 18 N 1.46501 * 109.47067 * 65.00286 * 17 14 13 19 19 C 1.34946 * 126.03566 * 124.99509 * 18 17 14 20 20 C 1.35318 * 107.74053 * 179.97438 * 19 18 17 21 21 C 1.39867 * 107.92557 * 0.02562 * 20 19 18 22 22 N 1.30841 * 108.19787 * 359.73809 * 21 20 19 23 23 H 1.08993 * 109.47456 * 63.10374 * 1 2 3 24 24 H 1.09006 * 109.46422 * 183.10293 * 1 2 3 25 25 H 1.08997 * 109.46801 * 303.09959 * 1 2 3 26 26 H 1.09005 * 109.47089 * 294.99231 * 4 2 1 27 27 H 1.09002 * 109.47206 * 54.99533 * 4 2 1 28 28 H 0.97000 * 119.99915 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00071 * 128.73161 * 13 2 1 30 30 H 1.08999 * 109.47435 * 294.20168 * 16 14 13 31 31 H 1.09008 * 109.47249 * 54.20393 * 16 14 13 32 32 H 1.08999 * 109.47304 * 174.19766 * 16 14 13 33 33 H 1.09003 * 109.46608 * 185.00182 * 17 14 13 34 34 H 1.08997 * 109.46899 * 304.99895 * 17 14 13 35 35 H 1.08000 * 126.12874 * 359.95982 * 19 18 17 36 36 H 1.08008 * 126.03834 * 180.02562 * 20 19 18 37 37 H 1.08000 * 125.90161 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5420 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1924 -2.3584 8 7 3.5764 -1.8367 -3.3002 9 14 6.0921 -1.0599 -2.4374 10 1 6.7009 -2.2125 -1.7261 11 1 6.5289 -1.0672 -3.8567 12 1 6.5261 0.2052 -1.7923 13 7 2.0198 -0.6924 1.1994 14 6 2.5802 0.2612 2.1660 15 1 3.1941 0.9927 1.6406 16 6 1.4413 0.9794 2.8927 17 6 3.4408 -0.4903 3.1836 18 7 4.5978 -1.0789 2.5046 19 6 5.8927 -0.8897 2.8342 20 6 6.6474 -1.6041 1.9675 21 6 5.7843 -2.2515 1.0775 22 7 4.5552 -1.9416 1.4018 23 1 -0.3634 0.4649 -0.9164 24 1 -0.3632 -1.0263 0.0556 25 1 -0.3633 0.5612 0.8609 26 1 1.7518 -1.7715 -1.2057 27 1 1.6053 -0.2616 -2.1370 28 1 4.0608 -2.2433 -4.0356 29 1 2.6960 -1.4010 0.9571 30 1 0.8900 1.5969 2.1836 31 1 0.7689 0.2425 3.3323 32 1 1.8535 1.6103 3.6802 33 1 3.7840 0.2030 3.9515 34 1 2.8498 -1.2809 3.6458 35 1 6.2606 -0.2776 3.6444 36 1 7.7258 -1.6638 1.9637 37 1 6.0810 -2.8988 0.2654 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276297811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:58 Heat of formation + Delta-G solvation = 52.298904 kcal Electronic energy + Delta-G solvation = -17814.405615 eV Core-core repulsion = 15206.482348 eV Total energy + Delta-G solvation = -2607.923267 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.95652 -38.78539 -35.77788 -34.21367 -32.38476 -30.80929 -29.40001 -29.25011 -27.04472 -24.99602 -22.48769 -21.83541 -21.22371 -20.98791 -18.49750 -18.03895 -17.13155 -16.64142 -15.93700 -15.52024 -15.33755 -14.85512 -14.57314 -14.14627 -13.80393 -13.70238 -13.42065 -13.24797 -13.06234 -12.91289 -12.87305 -12.59491 -12.44924 -12.21197 -12.03179 -11.96366 -11.23486 -11.12929 -11.00800 -10.52875 -10.19584 -9.39712 -9.09188 -8.14994 -6.20735 1.14265 1.33751 1.34482 1.44769 1.79683 2.05003 2.40935 3.17687 3.44201 3.67291 4.07955 4.14183 4.23752 4.28315 4.37073 4.50582 4.65400 4.71410 4.73755 4.83359 4.94549 4.97801 5.04905 5.10612 5.20559 5.25003 5.34892 5.45901 5.50579 5.56585 5.79251 5.84941 6.26431 6.32263 6.49523 6.84527 6.89242 7.05359 7.45772 8.97431 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.013181 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.268021 B = 2123.775332 C = 3480.854434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.096 3.904 3 H 0.026 0.974 4 C 0.019 3.981 5 C -0.493 4.493 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.935 5.935 9 Si 0.940 3.060 10 H -0.253 1.253 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.690 5.690 14 C 0.068 3.932 15 H 0.013 0.987 16 C -0.129 4.129 17 C 0.130 3.870 18 N -0.381 5.381 19 C 0.056 3.944 20 C -0.292 4.292 21 C 0.021 3.979 22 N -0.303 5.303 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.068 0.932 26 H -0.011 1.011 27 H -0.010 1.010 28 H 0.259 0.741 29 H 0.364 0.636 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.218 0.782 36 H 0.164 0.836 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 4.710 16.500 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.014 4.014 3 H 0.044 0.956 4 C -0.018 4.018 5 C -0.531 4.531 6 H 0.062 0.938 7 C -0.187 4.187 8 N -0.576 5.576 9 Si 0.766 3.234 10 H -0.178 1.178 11 H -0.217 1.217 12 H -0.202 1.202 13 N -0.330 5.330 14 C -0.043 4.043 15 H 0.031 0.969 16 C -0.187 4.187 17 C 0.010 3.990 18 N -0.164 5.164 19 C -0.090 4.090 20 C -0.322 4.322 21 C -0.165 4.165 22 N -0.125 5.125 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.068 0.932 29 H 0.192 0.808 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.161 0.839 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.181 0.819 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.661 4.475 16.451 17.061 hybrid contribution 2.562 0.095 -1.326 2.887 sum 3.223 4.570 15.124 16.125 Atomic orbital electron populations 1.21752 0.94608 1.01168 1.00715 1.21420 0.95063 0.94879 0.89996 0.95578 1.19351 0.95427 0.94250 0.92817 1.21141 0.92370 1.32685 1.06889 0.93823 1.25669 1.02279 0.95219 0.95536 1.70099 1.36985 1.37627 1.12921 0.85853 0.81537 0.79227 0.76740 1.17791 1.21723 1.20203 1.61060 1.43867 1.14963 1.13102 1.21933 0.95311 0.93397 0.93641 0.96858 1.21757 0.97154 0.99911 0.99902 1.22248 0.84327 0.98378 0.94036 1.49145 1.06752 1.36522 1.23966 1.23183 0.83476 1.00901 1.01414 1.21776 1.01469 1.08043 1.00869 1.23948 0.91016 1.01244 1.00272 1.77099 1.22427 1.10712 1.02247 0.93596 0.93636 0.91346 0.99260 0.99175 0.93213 0.80826 0.93226 0.91238 0.89640 0.83896 0.88779 0.76586 0.81871 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 9.46 71.98 0.68 -3.97 16 2 C 0.10 4.29 2.24 44.92 0.10 4.39 16 3 H 0.03 1.19 7.31 -2.38 -0.02 1.18 16 4 C 0.02 1.06 4.38 29.85 0.13 1.20 16 5 C -0.49 -28.66 7.93 25.60 0.20 -28.46 16 6 H 0.04 2.55 7.65 -2.91 -0.02 2.53 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -58.82 13.29 21.45 0.28 -58.53 16 9 Si 0.94 46.14 29.02 68.60 1.99 48.13 16 10 H -0.25 -11.45 6.35 99.48 0.63 -10.82 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 N -0.69 -27.95 6.13 -469.48 -2.88 -30.83 16 14 C 0.07 2.14 2.73 44.92 0.12 2.26 16 15 H 0.01 0.50 7.64 -2.39 -0.02 0.48 16 16 C -0.13 -2.97 8.92 71.98 0.64 -2.33 16 17 C 0.13 3.24 6.13 86.38 0.53 3.77 16 18 N -0.38 -12.11 3.68 -348.06 -1.28 -13.39 16 19 C 0.06 1.45 11.45 83.54 0.96 2.41 16 20 C -0.29 -8.86 10.80 21.99 0.24 -8.62 16 21 C 0.02 0.81 11.58 85.23 0.99 1.80 16 22 N -0.30 -12.60 9.35 -57.02 -0.53 -13.14 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 25 H 0.07 2.14 6.78 -2.39 -0.02 2.12 16 26 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.36 16.85 4.18 -89.69 -0.37 16.48 16 30 H 0.05 1.25 6.87 -2.39 -0.02 1.23 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.14 2.08 8.07 -2.39 -0.02 2.06 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.16 6.45 7.22 -2.91 -0.02 6.43 16 Total: -1.00 -73.12 300.24 3.22 -69.90 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.59 Total: 24.36 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 5.05 Total: -26.50 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.41 Total: -115.89 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.99 Total: 48.13 kcal Total: -73.12 3.22 -69.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276297811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.196 kcal (2) G-P(sol) polarization free energy of solvation -73.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds