Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 C 1.52998 * 109.47319 * 119.99777 * 2 1 3 5 5 C 1.50692 * 109.47111 * 185.00467 * 4 2 1 6 6 H 1.07997 * 120.00293 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99937 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99700 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 119.99867 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47468 * 90.00164 * 9 7 5 11 11 H 1.48507 * 109.47249 * 210.00318 * 9 7 5 12 12 H 1.48500 * 109.47356 * 329.99744 * 9 7 5 13 13 N 1.46895 * 109.47340 * 239.99965 * 2 1 3 14 14 C 1.46903 * 110.99925 * 84.99441 * 13 2 1 15 15 H 1.08998 * 109.47629 * 325.00422 * 14 13 2 16 16 C 1.53008 * 109.46886 * 85.00590 * 14 13 2 17 17 C 1.52999 * 109.47118 * 204.99815 * 14 13 2 18 18 N 1.46501 * 109.46864 * 65.00436 * 17 14 13 19 19 C 1.34953 * 126.03725 * 125.00110 * 18 17 14 20 20 C 1.35312 * 107.74266 * 180.20624 * 19 18 17 21 21 C 1.39863 * 107.92527 * 359.64076 * 20 19 18 22 22 N 1.30837 * 108.19940 * 0.36269 * 21 20 19 23 23 H 1.08999 * 109.47146 * 299.99944 * 1 2 3 24 24 H 1.08996 * 109.47417 * 60.00497 * 1 2 3 25 25 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46978 * 305.00377 * 4 2 1 27 27 H 1.09003 * 109.47208 * 64.99942 * 4 2 1 28 28 H 0.97004 * 119.99091 * 180.02562 * 8 7 5 29 29 H 1.00902 * 111.00360 * 208.95129 * 13 2 1 30 30 H 1.09005 * 109.46731 * 299.99508 * 16 14 13 31 31 H 1.08998 * 109.47124 * 59.99523 * 16 14 13 32 32 H 1.08995 * 109.46803 * 179.97438 * 16 14 13 33 33 H 1.08998 * 109.47551 * 305.00799 * 17 14 13 34 34 H 1.09002 * 109.47429 * 185.00294 * 17 14 13 35 35 H 1.08002 * 126.12372 * 359.93597 * 19 18 17 36 36 H 1.08008 * 126.03698 * 179.76435 * 20 19 18 37 37 H 1.08001 * 125.90034 * 180.14354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5418 -0.6147 1.3127 6 1 4.0789 -0.0860 0.5392 7 6 4.2304 -1.1933 2.3579 8 7 5.5411 -1.0999 2.4135 9 14 3.3016 -2.1085 3.6953 10 1 3.1700 -3.5384 3.3170 11 1 4.0454 -2.0017 4.9763 12 1 1.9509 -1.5127 3.8563 13 7 2.0197 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 1 1.2575 0.9329 -2.2907 16 6 3.4111 0.9809 -2.3224 17 6 1.9770 -0.5797 -3.6454 18 7 0.6569 -1.2101 -3.7241 19 6 -0.2243 -1.0831 -4.7382 20 6 -1.3193 -1.8147 -4.4271 21 6 -1.0965 -2.4157 -3.1840 22 7 0.0866 -2.0516 -2.7602 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -0.2616 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 6.0255 -1.5073 3.1486 29 1 2.9173 -1.1205 -1.0287 30 1 3.4861 1.5526 -1.3973 31 1 4.2359 0.2706 -2.3786 32 1 3.4578 1.6596 -3.1741 33 1 2.7486 -1.3494 -3.6605 34 1 2.1124 0.0874 -4.4967 35 1 -0.0828 -0.4985 -5.6352 36 1 -2.2076 -1.9180 -5.0327 37 1 -1.7839 -3.0650 -2.6621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276297813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = 71.500183 kcal Electronic energy + Delta-G solvation = -17269.085945 eV Core-core repulsion = 14661.995308 eV Total energy + Delta-G solvation = -2607.090637 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76292 -37.45866 -34.21396 -32.34463 -31.22319 -29.63592 -28.04124 -27.56742 -26.04255 -22.77902 -21.22681 -20.71741 -19.96772 -19.36574 -16.99534 -16.74389 -15.54893 -14.85106 -14.36262 -14.10774 -14.07122 -13.36477 -13.16644 -12.83344 -12.55090 -12.48275 -12.15441 -12.01309 -11.70969 -11.61444 -11.40168 -10.96069 -10.80745 -10.65030 -10.21402 -10.08141 -9.77452 -9.39584 -9.18276 -9.05737 -8.52866 -8.29192 -7.49496 -6.05012 -4.02451 2.26149 2.87066 3.18448 3.34234 3.41009 3.46125 4.47233 4.60703 4.82587 4.98882 5.21256 5.32583 5.33775 5.43375 5.56730 5.72768 5.82190 5.93105 5.94761 6.02041 6.14370 6.22486 6.25138 6.32359 6.49462 6.56222 6.81287 6.92857 6.97609 7.25243 7.32874 7.37518 7.79787 7.98815 8.13995 8.32978 8.51103 8.97149 9.58853 11.07920 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.006643 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.354330 B = 4213.895035 C = 4673.423753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.103 3.897 3 H 0.030 0.970 4 C -0.016 4.016 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.069 3.931 8 N -0.904 5.904 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.657 5.657 14 C 0.074 3.926 15 H 0.073 0.927 16 C -0.179 4.179 17 C 0.142 3.858 18 N -0.356 5.356 19 C 0.032 3.968 20 C -0.280 4.280 21 C 0.012 3.988 22 N -0.226 5.226 23 H 0.041 0.959 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.022 0.978 28 H 0.262 0.738 29 H 0.356 0.644 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.137 0.863 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 1.878 -13.666 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.006 4.006 3 H 0.048 0.952 4 C -0.054 4.054 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.291 5.291 14 C -0.038 4.038 15 H 0.091 0.909 16 C -0.239 4.239 17 C 0.020 3.980 18 N -0.138 5.138 19 C -0.114 4.114 20 C -0.310 4.310 21 C -0.175 4.175 22 N -0.047 5.047 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.178 0.822 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.181 0.819 36 H 0.155 0.845 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.524 1.544 -12.766 16.001 hybrid contribution -0.189 0.204 0.233 0.363 sum -9.712 1.748 -12.533 15.952 Atomic orbital electron populations 1.21758 0.96729 1.01491 0.98817 1.21304 0.93112 0.95566 0.90655 0.95231 1.19751 0.96869 0.96111 0.92642 1.21094 0.89919 1.35057 1.09723 0.91204 1.24998 0.94662 0.95733 0.97877 1.69919 1.06568 1.45401 1.32369 0.86756 0.80395 0.80648 0.81337 1.20252 1.21645 1.19077 1.60583 1.34599 1.30478 1.03397 1.21755 0.96967 0.93403 0.91690 0.90928 1.22464 0.98080 1.01013 1.02344 1.21850 0.80727 0.96519 0.98888 1.48698 1.14342 1.36923 1.13826 1.22464 0.91601 1.02570 0.94803 1.21381 1.00964 1.08320 1.00374 1.23958 0.96024 1.01680 0.95835 1.77919 1.08867 1.07123 1.10769 0.93991 0.94824 0.92321 0.96366 0.95963 0.92821 0.82228 0.91359 0.91856 0.93017 0.89778 0.89271 0.81932 0.84529 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.40 37.16 0.35 -2.04 16 2 C 0.10 2.10 2.40 -67.72 -0.16 1.94 16 3 H 0.03 0.62 7.11 -51.93 -0.37 0.25 16 4 C -0.02 -0.39 3.64 -27.89 -0.10 -0.49 16 5 C -0.52 -14.35 8.67 -34.44 -0.30 -14.65 16 6 H 0.07 2.03 7.73 -52.49 -0.41 1.62 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 9 Si 0.88 22.07 27.47 -169.99 -4.67 17.41 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 N -0.66 -12.35 4.97 -99.74 -0.50 -12.84 16 14 C 0.07 1.11 2.61 -67.71 -0.18 0.94 16 15 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 16 C -0.18 -2.57 9.15 37.16 0.34 -2.23 16 17 C 0.14 1.82 6.18 -4.04 -0.02 1.79 16 18 N -0.36 -5.12 3.68 -61.36 -0.23 -5.34 16 19 C 0.03 0.38 11.45 -17.22 -0.20 0.18 16 20 C -0.28 -3.45 10.80 -40.02 -0.43 -3.89 16 21 C 0.01 0.17 12.03 -17.37 -0.21 -0.04 16 22 N -0.23 -3.82 11.44 30.62 0.35 -3.47 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.58 7.43 -51.93 -0.39 0.20 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 27 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.36 7.49 6.95 -39.29 -0.27 7.21 16 30 H 0.07 1.13 7.43 -51.93 -0.39 0.75 16 31 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -31.33 303.85 -6.62 -37.96 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.92 Total: 5.05 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.01 Total: -16.60 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.40 Total: -48.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.33 -6.62 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276297813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.457 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds