Wall clock time and date at job start Sun Mar 29 2020 21:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 C 1.52998 * 109.47319 * 119.99777 * 2 1 3 5 5 C 1.50692 * 109.47111 * 185.00467 * 4 2 1 6 6 H 1.07997 * 120.00293 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99937 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99700 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 119.99867 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47468 * 90.00164 * 9 7 5 11 11 H 1.48507 * 109.47249 * 210.00318 * 9 7 5 12 12 H 1.48500 * 109.47356 * 329.99744 * 9 7 5 13 13 N 1.46895 * 109.47340 * 239.99965 * 2 1 3 14 14 C 1.46903 * 110.99925 * 84.99441 * 13 2 1 15 15 H 1.08998 * 109.47629 * 325.00422 * 14 13 2 16 16 C 1.53008 * 109.46886 * 85.00590 * 14 13 2 17 17 C 1.52999 * 109.47118 * 204.99815 * 14 13 2 18 18 N 1.46501 * 109.46864 * 65.00436 * 17 14 13 19 19 C 1.34953 * 126.03725 * 125.00110 * 18 17 14 20 20 C 1.35312 * 107.74266 * 180.20624 * 19 18 17 21 21 C 1.39863 * 107.92527 * 359.64076 * 20 19 18 22 22 N 1.30837 * 108.19940 * 0.36269 * 21 20 19 23 23 H 1.08999 * 109.47146 * 299.99944 * 1 2 3 24 24 H 1.08996 * 109.47417 * 60.00497 * 1 2 3 25 25 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46978 * 305.00377 * 4 2 1 27 27 H 1.09003 * 109.47208 * 64.99942 * 4 2 1 28 28 H 0.97004 * 119.99091 * 180.02562 * 8 7 5 29 29 H 1.00902 * 111.00360 * 208.95129 * 13 2 1 30 30 H 1.09005 * 109.46731 * 299.99508 * 16 14 13 31 31 H 1.08998 * 109.47124 * 59.99523 * 16 14 13 32 32 H 1.08995 * 109.46803 * 179.97438 * 16 14 13 33 33 H 1.08998 * 109.47551 * 305.00799 * 17 14 13 34 34 H 1.09002 * 109.47429 * 185.00294 * 17 14 13 35 35 H 1.08002 * 126.12372 * 359.93597 * 19 18 17 36 36 H 1.08008 * 126.03698 * 179.76435 * 20 19 18 37 37 H 1.08001 * 125.90034 * 180.14354 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5418 -0.6147 1.3127 6 1 4.0789 -0.0860 0.5392 7 6 4.2304 -1.1933 2.3579 8 7 5.5411 -1.0999 2.4135 9 14 3.3016 -2.1085 3.6953 10 1 3.1700 -3.5384 3.3170 11 1 4.0454 -2.0017 4.9763 12 1 1.9509 -1.5127 3.8563 13 7 2.0197 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 1 1.2575 0.9329 -2.2907 16 6 3.4111 0.9809 -2.3224 17 6 1.9770 -0.5797 -3.6454 18 7 0.6569 -1.2101 -3.7241 19 6 -0.2243 -1.0831 -4.7382 20 6 -1.3193 -1.8147 -4.4271 21 6 -1.0965 -2.4157 -3.1840 22 7 0.0866 -2.0516 -2.7602 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -0.2616 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 6.0255 -1.5073 3.1486 29 1 2.9173 -1.1205 -1.0287 30 1 3.4861 1.5526 -1.3973 31 1 4.2359 0.2706 -2.3786 32 1 3.4578 1.6596 -3.1741 33 1 2.7486 -1.3494 -3.6605 34 1 2.1124 0.0874 -4.4967 35 1 -0.0828 -0.4985 -5.6352 36 1 -2.2076 -1.9180 -5.0327 37 1 -1.7839 -3.0650 -2.6621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276297813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:00 Heat of formation + Delta-G solvation = 50.847669 kcal Electronic energy + Delta-G solvation = -17269.981505 eV Core-core repulsion = 14661.995308 eV Total energy + Delta-G solvation = -2607.986197 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75373 -38.89898 -35.75419 -34.28619 -32.50118 -30.61763 -29.92550 -29.02478 -27.09541 -24.70840 -22.47727 -21.65386 -21.13393 -20.98579 -18.92538 -17.98367 -16.90868 -16.51251 -15.93075 -15.42010 -15.29826 -14.73111 -14.37922 -14.30354 -14.12365 -13.72275 -13.51372 -13.44005 -13.27066 -13.02877 -12.86552 -12.56609 -12.37098 -12.12269 -11.82309 -11.76914 -11.30761 -11.20220 -11.08998 -10.75385 -10.12579 -9.28324 -8.95215 -8.28247 -6.29549 1.30324 1.35077 1.36076 1.47514 1.91925 2.20348 2.36319 3.05633 3.40719 3.74197 4.02704 4.15048 4.23419 4.32509 4.39369 4.46305 4.55292 4.64659 4.65221 4.81709 4.92863 4.96920 5.03747 5.10931 5.11348 5.23841 5.28371 5.33503 5.38166 5.51470 5.69239 5.99275 6.26272 6.40792 6.48250 6.69874 6.76764 7.13443 7.34549 8.87396 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.006643 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.354330 B = 4213.895035 C = 4673.423753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.109 3.891 3 H 0.019 0.981 4 C -0.010 4.010 5 C -0.516 4.516 6 H 0.042 0.958 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.253 1.253 13 N -0.660 5.660 14 C 0.076 3.924 15 H 0.071 0.929 16 C -0.171 4.171 17 C 0.145 3.855 18 N -0.367 5.367 19 C 0.039 3.961 20 C -0.288 4.288 21 C 0.002 3.998 22 N -0.284 5.284 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.017 0.983 27 H 0.015 0.985 28 H 0.264 0.736 29 H 0.338 0.662 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.204 0.796 36 H 0.161 0.839 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 2.215 -15.152 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.001 4.001 3 H 0.037 0.963 4 C -0.048 4.048 5 C -0.554 4.554 6 H 0.060 0.940 7 C -0.186 4.186 8 N -0.588 5.588 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.177 1.177 13 N -0.291 5.291 14 C -0.035 4.035 15 H 0.089 0.911 16 C -0.230 4.230 17 C 0.023 3.977 18 N -0.150 5.150 19 C -0.107 4.107 20 C -0.318 4.318 21 C -0.184 4.184 22 N -0.105 5.105 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.221 0.779 36 H 0.179 0.821 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.339 1.891 -14.268 18.323 hybrid contribution 0.375 0.142 0.584 0.708 sum -10.964 2.033 -13.684 17.652 Atomic orbital electron populations 1.21592 0.94735 1.01189 0.99752 1.21169 0.94511 0.94425 0.89997 0.96321 1.19669 0.94451 0.96097 0.94566 1.21331 0.91744 1.33736 1.08596 0.93961 1.25839 0.95426 0.96920 1.00443 1.70048 1.08210 1.47034 1.33498 0.85766 0.79590 0.79402 0.78479 1.19789 1.21142 1.17714 1.60651 1.33332 1.31430 1.03725 1.21819 0.97033 0.93165 0.91488 0.91123 1.22350 0.97330 1.00986 1.02347 1.21911 0.80314 0.96621 0.98851 1.48796 1.14951 1.37031 1.14204 1.23151 0.90560 1.01880 0.95105 1.21734 1.02117 1.08039 0.99860 1.24357 0.95634 1.01634 0.96820 1.77840 1.10380 1.09248 1.13003 0.93020 0.93832 0.93163 0.96513 0.96637 0.92713 0.84257 0.94398 0.92917 0.89284 0.90692 0.84809 0.77909 0.82148 0.79749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 9.40 71.98 0.68 -3.42 16 2 C 0.11 4.45 2.40 44.91 0.11 4.56 16 3 H 0.02 0.80 7.11 -2.39 -0.02 0.78 16 4 C -0.01 -0.49 3.64 29.84 0.11 -0.38 16 5 C -0.52 -29.19 8.67 25.60 0.22 -28.97 16 6 H 0.04 2.57 7.73 -2.91 -0.02 2.54 16 7 C 0.01 0.63 5.47 84.66 0.46 1.09 16 8 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 9 Si 0.94 45.68 27.47 68.60 1.88 47.57 16 10 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 13 N -0.66 -25.00 4.97 -469.47 -2.33 -27.34 16 14 C 0.08 2.22 2.61 44.92 0.12 2.34 16 15 H 0.07 2.10 7.11 -2.39 -0.02 2.08 16 16 C -0.17 -4.79 9.15 71.98 0.66 -4.13 16 17 C 0.14 3.38 6.18 86.38 0.53 3.91 16 18 N -0.37 -9.78 3.68 -348.06 -1.28 -11.06 16 19 C 0.04 0.79 11.45 83.54 0.96 1.75 16 20 C -0.29 -6.30 10.80 21.99 0.24 -6.06 16 21 C 0.00 0.05 12.03 85.23 1.02 1.08 16 22 N -0.28 -9.32 11.44 -57.03 -0.65 -9.97 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.45 7.43 -2.39 -0.02 1.43 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.02 0.81 7.20 -2.38 -0.02 0.79 16 27 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.34 14.73 6.95 -89.69 -0.62 14.10 16 30 H 0.04 1.28 7.43 -2.38 -0.02 1.26 16 31 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.13 1.91 8.07 -2.39 -0.02 1.89 16 35 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.19 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -69.05 303.85 3.38 -65.67 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.36 Total: 22.09 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 5.11 Total: -28.23 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -3.97 Total: -107.10 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.57 kcal Total: -69.05 3.38 -65.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276297813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.519 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds