Wall clock time and date at job start Sun Mar 29 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46964 * 2 1 4 4 C 1.52999 * 109.46795 * 240.00358 * 2 1 3 5 5 C 1.50706 * 109.46872 * 175.00247 * 4 2 1 6 6 H 1.07998 * 120.00056 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00097 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99975 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99785 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47152 * 90.00320 * 9 7 5 11 11 H 1.48503 * 109.47085 * 209.99882 * 9 7 5 12 12 H 1.48499 * 109.47438 * 330.00121 * 9 7 5 13 13 N 1.46892 * 109.47129 * 120.00269 * 2 1 3 14 14 C 1.46894 * 111.00365 * 58.95528 * 13 2 1 15 15 C 1.46901 * 110.99991 * 295.00051 * 13 2 1 16 16 C 1.53003 * 109.47241 * 190.00524 * 15 13 2 17 17 N 1.46502 * 109.47267 * 179.97438 * 16 15 13 18 18 C 1.34948 * 126.03993 * 124.99155 * 17 16 15 19 19 C 1.35315 * 107.74520 * 179.97438 * 18 17 16 20 20 C 1.39870 * 107.92205 * 0.02562 * 19 18 17 21 21 N 1.30839 * 108.19862 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47431 * 300.00132 * 1 2 3 23 23 H 1.09004 * 109.47226 * 60.00196 * 1 2 3 24 24 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47264 * 294.99363 * 4 2 1 26 26 H 1.08995 * 109.47788 * 55.00112 * 4 2 1 27 27 H 0.97008 * 120.00292 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46933 * 296.04452 * 14 13 2 29 29 H 1.08994 * 109.47371 * 56.04375 * 14 13 2 30 30 H 1.09000 * 109.47377 * 176.04793 * 14 13 2 31 31 H 1.08994 * 109.47219 * 70.00255 * 15 13 2 32 32 H 1.09007 * 109.47067 * 309.99919 * 15 13 2 33 33 H 1.08994 * 109.47234 * 59.99741 * 16 15 13 34 34 H 1.09001 * 109.46792 * 299.99288 * 16 15 13 35 35 H 1.08007 * 126.12251 * 0.27272 * 18 17 16 36 36 H 1.08001 * 126.03475 * 179.97438 * 19 18 17 37 37 H 1.07997 * 125.89701 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 5.5409 -1.0994 -2.4141 9 14 3.3014 -2.1075 -3.6961 10 1 2.9398 -1.1623 -4.7828 11 1 4.1602 -3.1876 -4.2450 12 1 2.0658 -2.7002 -3.1240 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3789 -0.5663 3.6185 17 7 2.0095 0.1637 4.8338 18 6 1.4999 -0.3766 5.9605 19 6 1.2968 0.6278 6.8442 20 6 1.6954 1.8229 6.2366 21 7 2.1229 1.5458 5.0315 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 6.0254 -1.5061 -3.1495 28 1 0.4420 -2.0731 1.3347 29 1 1.8167 -2.5950 0.3318 30 1 1.9618 -2.5869 2.1057 31 1 0.5723 -0.0346 2.5725 32 1 1.9297 1.0870 2.3125 33 1 3.4554 -0.4926 3.4640 34 1 2.0979 -1.6141 3.7241 35 1 1.2957 -1.4237 6.1287 36 1 0.8968 0.5249 7.8421 37 1 1.6575 2.8047 6.6850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276310947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:29 Heat of formation + Delta-G solvation = 86.961284 kcal Electronic energy + Delta-G solvation = -16857.068144 eV Core-core repulsion = 14250.647950 eV Total energy + Delta-G solvation = -2606.420193 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07526 -38.21019 -34.11435 -32.54094 -30.94979 -30.03538 -28.07818 -27.84310 -25.70215 -23.33248 -21.80712 -21.05531 -20.26345 -18.85016 -17.26631 -16.59751 -15.57212 -15.36508 -14.80670 -14.41549 -14.01470 -13.79451 -13.45215 -13.14726 -12.82677 -12.60684 -12.32024 -12.20321 -11.84686 -11.71350 -11.42326 -11.01168 -10.82728 -10.70458 -10.49929 -10.26938 -9.67641 -9.58244 -9.39241 -9.06084 -8.58159 -8.45214 -7.67658 -5.93279 -3.88036 1.94323 2.55031 2.86021 3.33141 3.41271 3.42510 4.32995 4.51472 4.67813 4.83207 5.07955 5.14257 5.38703 5.41718 5.50550 5.59083 5.65542 5.70849 5.73976 5.84779 5.89308 5.98193 6.01988 6.11904 6.30965 6.43540 6.53362 6.66273 6.72244 7.03743 7.05660 7.29018 7.66692 7.70209 7.76073 7.89972 8.69122 9.19655 9.69256 11.20653 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041131 B = 0.005076 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.583702 B = 5515.047108 C = 5735.931671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 H 0.078 0.922 4 C -0.009 4.009 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.510 5.510 14 C 0.018 3.982 15 C 0.047 3.953 16 C 0.133 3.867 17 N -0.363 5.363 18 C 0.051 3.949 19 C -0.282 4.282 20 C 0.036 3.964 21 N -0.290 5.290 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.030 0.970 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.144 0.856 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -0.176 14.768 18.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.010 4.010 3 H 0.096 0.904 4 C -0.046 4.046 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.233 5.233 14 C -0.130 4.130 15 C -0.082 4.082 16 C 0.012 3.988 17 N -0.146 5.146 18 C -0.096 4.096 19 C -0.312 4.312 20 C -0.150 4.150 21 N -0.112 5.112 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.188 0.812 36 H 0.161 0.839 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.627 0.138 13.400 16.500 hybrid contribution -1.647 -0.922 0.070 1.889 sum -11.274 -0.784 13.470 17.583 Atomic orbital electron populations 1.22563 0.99607 1.01358 1.01140 1.21701 0.89926 0.98688 0.90688 0.90431 1.19735 0.98066 0.95356 0.91438 1.21062 0.89336 1.34027 1.08792 0.90242 1.25011 0.94661 0.96268 0.97772 1.69910 1.06441 1.46037 1.32259 0.86909 0.80144 0.80071 0.82828 1.20543 1.21581 1.19372 1.62004 1.59141 1.01656 1.00548 1.22499 0.96459 0.90829 1.03175 1.22264 0.96565 0.99647 0.89737 1.21847 1.02129 0.94102 0.80738 1.48858 1.48090 1.05342 1.12259 1.22577 0.99452 1.00002 0.87559 1.21464 1.15324 0.92063 1.02355 1.23871 0.99180 0.99650 0.92304 1.77413 1.23474 0.91642 1.18653 0.93775 0.92331 0.92867 0.96297 0.96699 0.93018 0.96406 0.89757 0.92544 0.95169 0.89722 0.88402 0.88756 0.81225 0.83870 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 8.50 37.16 0.32 -2.71 16 2 C 0.10 1.91 2.29 -67.72 -0.16 1.75 16 3 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 4 C -0.01 -0.20 3.34 -27.88 -0.09 -0.29 16 5 C -0.49 -13.84 9.39 -34.44 -0.32 -14.16 16 6 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 7 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 9 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.51 -9.24 4.46 -234.90 -1.05 -10.29 16 14 C 0.02 0.30 8.52 60.06 0.51 0.81 16 15 C 0.05 0.73 4.58 -3.82 -0.02 0.71 16 16 C 0.13 1.81 6.43 -4.04 -0.03 1.78 16 17 N -0.36 -4.97 3.68 -61.36 -0.23 -5.20 16 18 C 0.05 0.57 11.45 -17.22 -0.20 0.37 16 19 C -0.28 -3.03 10.80 -40.01 -0.43 -3.46 16 20 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 21 N -0.29 -4.39 12.42 30.62 0.38 -4.01 16 22 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.83 6.48 -51.93 -0.34 0.49 16 25 H 0.02 0.44 5.15 -51.92 -0.27 0.17 16 26 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.02 0.26 6.51 -51.93 -0.34 -0.08 16 29 H 0.08 1.54 6.03 -51.93 -0.31 1.23 16 30 H 0.06 0.77 6.47 -51.93 -0.34 0.44 16 31 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 32 H 0.08 1.45 8.00 -51.92 -0.42 1.04 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.09 1.06 6.48 -51.93 -0.34 0.72 16 35 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -32.20 296.71 -6.61 -38.80 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.56 Total: -0.11 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.72 Total: -13.26 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.12 Total: -46.84 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.20 -6.61 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276310947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.764 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds