Wall clock time and date at job start Sun Mar 29 2020 21:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46964 * 2 1 4 4 C 1.52999 * 109.46795 * 240.00358 * 2 1 3 5 5 C 1.50706 * 109.46872 * 175.00247 * 4 2 1 6 6 H 1.07998 * 120.00056 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00097 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99975 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99785 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47152 * 90.00320 * 9 7 5 11 11 H 1.48503 * 109.47085 * 209.99882 * 9 7 5 12 12 H 1.48499 * 109.47438 * 330.00121 * 9 7 5 13 13 N 1.46892 * 109.47129 * 120.00269 * 2 1 3 14 14 C 1.46894 * 111.00365 * 58.95528 * 13 2 1 15 15 C 1.46901 * 110.99991 * 295.00051 * 13 2 1 16 16 C 1.53003 * 109.47241 * 190.00524 * 15 13 2 17 17 N 1.46502 * 109.47267 * 179.97438 * 16 15 13 18 18 C 1.34948 * 126.03993 * 124.99155 * 17 16 15 19 19 C 1.35315 * 107.74520 * 179.97438 * 18 17 16 20 20 C 1.39870 * 107.92205 * 0.02562 * 19 18 17 21 21 N 1.30839 * 108.19862 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47431 * 300.00132 * 1 2 3 23 23 H 1.09004 * 109.47226 * 60.00196 * 1 2 3 24 24 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47264 * 294.99363 * 4 2 1 26 26 H 1.08995 * 109.47788 * 55.00112 * 4 2 1 27 27 H 0.97008 * 120.00292 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46933 * 296.04452 * 14 13 2 29 29 H 1.08994 * 109.47371 * 56.04375 * 14 13 2 30 30 H 1.09000 * 109.47377 * 176.04793 * 14 13 2 31 31 H 1.08994 * 109.47219 * 70.00255 * 15 13 2 32 32 H 1.09007 * 109.47067 * 309.99919 * 15 13 2 33 33 H 1.08994 * 109.47234 * 59.99741 * 16 15 13 34 34 H 1.09001 * 109.46792 * 299.99288 * 16 15 13 35 35 H 1.08007 * 126.12251 * 0.27272 * 18 17 16 36 36 H 1.08001 * 126.03475 * 179.97438 * 19 18 17 37 37 H 1.07997 * 125.89701 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 5.5409 -1.0994 -2.4141 9 14 3.3014 -2.1075 -3.6961 10 1 2.9398 -1.1623 -4.7828 11 1 4.1602 -3.1876 -4.2450 12 1 2.0658 -2.7002 -3.1240 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3789 -0.5663 3.6185 17 7 2.0095 0.1637 4.8338 18 6 1.4999 -0.3766 5.9605 19 6 1.2968 0.6278 6.8442 20 6 1.6954 1.8229 6.2366 21 7 2.1229 1.5458 5.0315 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 6.0254 -1.5061 -3.1495 28 1 0.4420 -2.0731 1.3347 29 1 1.8167 -2.5950 0.3318 30 1 1.9618 -2.5869 2.1057 31 1 0.5723 -0.0346 2.5725 32 1 1.9297 1.0870 2.3125 33 1 3.4554 -0.4926 3.4640 34 1 2.0979 -1.6141 3.7241 35 1 1.2957 -1.4237 6.1287 36 1 0.8968 0.5249 7.8421 37 1 1.6575 2.8047 6.6850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276310947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:28 Heat of formation + Delta-G solvation = 64.719169 kcal Electronic energy + Delta-G solvation = -16858.032634 eV Core-core repulsion = 14250.647950 eV Total energy + Delta-G solvation = -2607.384684 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.98859 -39.61677 -35.51738 -34.39643 -32.42945 -30.98247 -29.71639 -29.11685 -26.92757 -24.99883 -23.28284 -21.92449 -21.31962 -20.37575 -18.78878 -18.25422 -16.81477 -16.63476 -16.30669 -15.89526 -15.21751 -15.01658 -14.70240 -14.49453 -14.24040 -13.99401 -13.68411 -13.50015 -13.21168 -13.02903 -12.96297 -12.58206 -12.29508 -12.18024 -11.90268 -11.62197 -11.45065 -11.37266 -11.10154 -10.67667 -10.38366 -9.48304 -9.01610 -8.17232 -6.17112 1.05083 1.38317 1.39353 1.50357 1.60712 2.01361 2.42254 3.05565 3.21923 3.62032 3.97198 4.07188 4.12292 4.15466 4.26706 4.33308 4.45442 4.51729 4.58178 4.71545 4.80698 4.89170 4.92521 4.95361 5.06471 5.10264 5.18699 5.19734 5.25988 5.53514 5.74283 5.79703 6.16704 6.26159 6.34798 6.49628 6.84379 6.91486 7.43831 9.00386 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041131 B = 0.005076 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.583702 B = 5515.047108 C = 5735.931671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.493 4.493 6 H 0.032 0.968 7 C -0.002 4.002 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.538 5.538 14 C 0.020 3.980 15 C 0.061 3.939 16 C 0.141 3.859 17 N -0.379 5.379 18 C 0.052 3.948 19 C -0.285 4.285 20 C 0.033 3.967 21 N -0.347 5.347 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.207 0.793 36 H 0.172 0.828 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -1.648 15.772 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.009 4.009 3 H 0.071 0.929 4 C -0.042 4.042 5 C -0.532 4.532 6 H 0.050 0.950 7 C -0.197 4.197 8 N -0.601 5.601 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.168 1.168 13 N -0.262 5.262 14 C -0.127 4.127 15 C -0.068 4.068 16 C 0.019 3.981 17 N -0.162 5.162 18 C -0.094 4.094 19 C -0.314 4.314 20 C -0.152 4.152 21 N -0.169 5.169 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.224 0.776 36 H 0.190 0.810 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.421 -1.326 14.432 19.087 hybrid contribution -0.731 -0.387 -0.101 0.833 sum -13.152 -1.713 14.332 19.527 Atomic orbital electron populations 1.22401 0.96359 1.02414 1.02200 1.21480 0.92414 0.96960 0.90053 0.92882 1.19670 0.94570 0.96393 0.93589 1.21286 0.91995 1.32653 1.07238 0.94961 1.25957 0.95469 0.97549 1.00710 1.70090 1.08596 1.47900 1.33549 0.85740 0.79363 0.78614 0.79329 1.19732 1.21554 1.16811 1.61886 1.60459 1.02919 1.00943 1.22500 0.97980 0.89275 1.02982 1.22081 0.97276 0.97984 0.89427 1.21691 1.00490 0.95454 0.80423 1.48851 1.49332 1.05107 1.12903 1.23278 0.97910 1.01847 0.86376 1.21880 1.14776 0.91260 1.03486 1.24445 0.97775 1.01424 0.91588 1.77374 1.25901 0.93002 1.20661 0.92445 0.91618 0.91672 0.95345 0.96247 0.93021 0.94156 0.92221 0.90185 0.94016 0.92475 0.90760 0.85779 0.77626 0.81023 0.77985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 8.50 71.98 0.61 -4.62 16 2 C 0.10 3.85 2.29 44.92 0.10 3.95 16 3 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16 4 C 0.00 -0.22 3.34 29.85 0.10 -0.12 16 5 C -0.49 -28.46 9.39 25.60 0.24 -28.22 16 6 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 7 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 8 N -0.96 -61.48 13.96 21.45 0.30 -61.18 16 9 Si 0.95 44.47 27.47 68.60 1.88 46.36 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 13 N -0.54 -19.37 4.46 -897.08 -4.01 -23.38 16 14 C 0.02 0.61 8.52 127.69 1.09 1.69 16 15 C 0.06 1.88 4.58 86.30 0.40 2.28 16 16 C 0.14 3.72 6.43 86.38 0.56 4.28 16 17 N -0.38 -9.97 3.68 -348.05 -1.28 -11.25 16 18 C 0.05 1.00 11.45 83.54 0.96 1.96 16 19 C -0.28 -5.33 10.80 21.99 0.24 -5.09 16 20 C 0.03 0.76 12.03 85.24 1.03 1.78 16 21 N -0.35 -10.50 12.42 -57.02 -0.71 -11.21 16 22 H 0.06 1.57 6.75 -2.39 -0.02 1.55 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.80 6.48 -2.38 -0.02 1.78 16 25 H 0.03 1.26 5.15 -2.38 -0.01 1.25 16 26 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 27 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 28 H 0.04 1.03 6.51 -2.39 -0.02 1.01 16 29 H 0.06 2.09 6.03 -2.39 -0.01 2.07 16 30 H 0.08 1.98 6.47 -2.39 -0.02 1.96 16 31 H 0.04 1.18 6.94 -2.39 -0.02 1.17 16 32 H 0.06 2.05 8.00 -2.38 -0.02 2.03 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.12 2.46 6.48 -2.39 -0.02 2.45 16 35 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -72.67 296.71 2.95 -69.72 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.98 Total: 12.70 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 5.78 Total: -21.76 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -5.69 Total: -107.01 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -72.67 2.95 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276310947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.436 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds