Wall clock time and date at job start Sun Mar 29 2020 21:40:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.46964 * 2 1
4 4 C 1.52999 * 109.46795 * 240.00358 * 2 1 3
5 5 C 1.50706 * 109.46872 * 175.00247 * 4 2 1
6 6 H 1.07998 * 120.00056 * 359.97438 * 5 4 2
7 7 C 1.37881 * 120.00097 * 180.02562 * 5 4 2
8 8 N 1.31507 * 119.99975 * 179.97438 * 7 5 4
9 9 Si 1.86799 * 119.99785 * 359.97438 * 7 5 4
10 10 H 1.48501 * 109.47152 * 90.00320 * 9 7 5
11 11 H 1.48503 * 109.47085 * 209.99882 * 9 7 5
12 12 H 1.48499 * 109.47438 * 330.00121 * 9 7 5
13 13 N 1.46892 * 109.47129 * 120.00269 * 2 1 3
14 14 C 1.46894 * 111.00365 * 58.95528 * 13 2 1
15 15 C 1.46901 * 110.99991 * 295.00051 * 13 2 1
16 16 C 1.53003 * 109.47241 * 190.00524 * 15 13 2
17 17 N 1.46502 * 109.47267 * 179.97438 * 16 15 13
18 18 C 1.34948 * 126.03993 * 124.99155 * 17 16 15
19 19 C 1.35315 * 107.74520 * 179.97438 * 18 17 16
20 20 C 1.39870 * 107.92205 * 0.02562 * 19 18 17
21 21 N 1.30839 * 108.19862 * 359.97438 * 20 19 18
22 22 H 1.09000 * 109.47431 * 300.00132 * 1 2 3
23 23 H 1.09004 * 109.47226 * 60.00196 * 1 2 3
24 24 H 1.09004 * 109.46756 * 179.97438 * 1 2 3
25 25 H 1.09008 * 109.47264 * 294.99363 * 4 2 1
26 26 H 1.08995 * 109.47788 * 55.00112 * 4 2 1
27 27 H 0.97008 * 120.00292 * 179.97438 * 8 7 5
28 28 H 1.09001 * 109.46933 * 296.04452 * 14 13 2
29 29 H 1.08994 * 109.47371 * 56.04375 * 14 13 2
30 30 H 1.09000 * 109.47377 * 176.04793 * 14 13 2
31 31 H 1.08994 * 109.47219 * 70.00255 * 15 13 2
32 32 H 1.09007 * 109.47067 * 309.99919 * 15 13 2
33 33 H 1.08994 * 109.47234 * 59.99741 * 16 15 13
34 34 H 1.09001 * 109.46792 * 299.99288 * 16 15 13
35 35 H 1.08007 * 126.12251 * 0.27272 * 18 17 16
36 36 H 1.08001 * 126.03475 * 179.97438 * 19 18 17
37 37 H 1.07997 * 125.89701 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 3.5419 -0.6149 -1.3128
6 1 4.0789 -0.0855 -0.5396
7 6 4.2304 -1.1926 -2.3584
8 7 5.5409 -1.0994 -2.4141
9 14 3.3014 -2.1075 -3.6961
10 1 2.9398 -1.1623 -4.7828
11 1 4.1602 -3.1876 -4.2450
12 1 2.0658 -2.7002 -3.1240
13 7 2.0197 -0.6925 1.1993
14 6 1.5284 -2.0761 1.2459
15 6 1.6487 0.0391 2.4180
16 6 2.3789 -0.5663 3.6185
17 7 2.0095 0.1637 4.8338
18 6 1.4999 -0.3766 5.9605
19 6 1.2968 0.6278 6.8442
20 6 1.6954 1.8229 6.2366
21 7 2.1229 1.5458 5.0315
22 1 -0.3634 0.5138 0.8899
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.7516 -1.7715 -1.2057
26 1 1.6054 -0.2617 -2.1370
27 1 6.0254 -1.5061 -3.1495
28 1 0.4420 -2.0731 1.3347
29 1 1.8167 -2.5950 0.3318
30 1 1.9618 -2.5869 2.1057
31 1 0.5723 -0.0346 2.5725
32 1 1.9297 1.0870 2.3125
33 1 3.4554 -0.4926 3.4640
34 1 2.0979 -1.6141 3.7241
35 1 1.2957 -1.4237 6.1287
36 1 0.8968 0.5249 7.8421
37 1 1.6575 2.8047 6.6850
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000276310947.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:40:28
Heat of formation + Delta-G solvation = 64.719169 kcal
Electronic energy + Delta-G solvation = -16858.032634 eV
Core-core repulsion = 14250.647950 eV
Total energy + Delta-G solvation = -2607.384684 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 237.154 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.98859 -39.61677 -35.51738 -34.39643 -32.42945 -30.98247 -29.71639 -29.11685
-26.92757 -24.99883 -23.28284 -21.92449 -21.31962 -20.37575 -18.78878 -18.25422
-16.81477 -16.63476 -16.30669 -15.89526 -15.21751 -15.01658 -14.70240 -14.49453
-14.24040 -13.99401 -13.68411 -13.50015 -13.21168 -13.02903 -12.96297 -12.58206
-12.29508 -12.18024 -11.90268 -11.62197 -11.45065 -11.37266 -11.10154 -10.67667
-10.38366 -9.48304 -9.01610 -8.17232 -6.17112 1.05083 1.38317 1.39353
1.50357 1.60712 2.01361 2.42254 3.05565 3.21923 3.62032 3.97198
4.07188 4.12292 4.15466 4.26706 4.33308 4.45442 4.51729 4.58178
4.71545 4.80698 4.89170 4.92521 4.95361 5.06471 5.10264 5.18699
5.19734 5.25988 5.53514 5.74283 5.79703 6.16704 6.26159 6.34798
6.49628 6.84379 6.91486 7.43831 9.00386
Molecular weight = 237.15amu
Principal moments of inertia in cm(-1)
A = 0.041131 B = 0.005076 C = 0.004880
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 680.583702 B = 5515.047108 C = 5735.931671
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.099 3.901
3 H 0.053 0.947
4 C -0.005 4.005
5 C -0.493 4.493
6 H 0.032 0.968
7 C -0.002 4.002
8 N -0.959 5.959
9 Si 0.945 3.055
10 H -0.272 1.272
11 H -0.289 1.289
12 H -0.245 1.245
13 N -0.538 5.538
14 C 0.020 3.980
15 C 0.061 3.939
16 C 0.141 3.859
17 N -0.379 5.379
18 C 0.052 3.948
19 C -0.285 4.285
20 C 0.033 3.967
21 N -0.347 5.347
22 H 0.057 0.943
23 H 0.065 0.935
24 H 0.064 0.936
25 H 0.028 0.972
26 H 0.019 0.981
27 H 0.261 0.739
28 H 0.040 0.960
29 H 0.059 0.941
30 H 0.080 0.920
31 H 0.042 0.958
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.124 0.876
35 H 0.207 0.793
36 H 0.172 0.828
37 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.599 -1.648 15.772 20.891
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.009 4.009
3 H 0.071 0.929
4 C -0.042 4.042
5 C -0.532 4.532
6 H 0.050 0.950
7 C -0.197 4.197
8 N -0.601 5.601
9 Si 0.770 3.230
10 H -0.197 1.197
11 H -0.216 1.216
12 H -0.168 1.168
13 N -0.262 5.262
14 C -0.127 4.127
15 C -0.068 4.068
16 C 0.019 3.981
17 N -0.162 5.162
18 C -0.094 4.094
19 C -0.314 4.314
20 C -0.152 4.152
21 N -0.169 5.169
22 H 0.076 0.924
23 H 0.084 0.916
24 H 0.083 0.917
25 H 0.047 0.953
26 H 0.038 0.962
27 H 0.070 0.930
28 H 0.058 0.942
29 H 0.078 0.922
30 H 0.098 0.902
31 H 0.060 0.940
32 H 0.075 0.925
33 H 0.092 0.908
34 H 0.142 0.858
35 H 0.224 0.776
36 H 0.190 0.810
37 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges -12.421 -1.326 14.432 19.087
hybrid contribution -0.731 -0.387 -0.101 0.833
sum -13.152 -1.713 14.332 19.527
Atomic orbital electron populations
1.22401 0.96359 1.02414 1.02200 1.21480 0.92414 0.96960 0.90053
0.92882 1.19670 0.94570 0.96393 0.93589 1.21286 0.91995 1.32653
1.07238 0.94961 1.25957 0.95469 0.97549 1.00710 1.70090 1.08596
1.47900 1.33549 0.85740 0.79363 0.78614 0.79329 1.19732 1.21554
1.16811 1.61886 1.60459 1.02919 1.00943 1.22500 0.97980 0.89275
1.02982 1.22081 0.97276 0.97984 0.89427 1.21691 1.00490 0.95454
0.80423 1.48851 1.49332 1.05107 1.12903 1.23278 0.97910 1.01847
0.86376 1.21880 1.14776 0.91260 1.03486 1.24445 0.97775 1.01424
0.91588 1.77374 1.25901 0.93002 1.20661 0.92445 0.91618 0.91672
0.95345 0.96247 0.93021 0.94156 0.92221 0.90185 0.94016 0.92475
0.90760 0.85779 0.77626 0.81023 0.77985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.23 8.50 71.98 0.61 -4.62 16
2 C 0.10 3.85 2.29 44.92 0.10 3.95 16
3 H 0.05 2.27 8.03 -2.39 -0.02 2.25 16
4 C 0.00 -0.22 3.34 29.85 0.10 -0.12 16
5 C -0.49 -28.46 9.39 25.60 0.24 -28.22 16
6 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16
7 C 0.00 -0.11 5.47 84.66 0.46 0.35 16
8 N -0.96 -61.48 13.96 21.45 0.30 -61.18 16
9 Si 0.95 44.47 27.47 68.60 1.88 46.36 16
10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16
12 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16
13 N -0.54 -19.37 4.46 -897.08 -4.01 -23.38 16
14 C 0.02 0.61 8.52 127.69 1.09 1.69 16
15 C 0.06 1.88 4.58 86.30 0.40 2.28 16
16 C 0.14 3.72 6.43 86.38 0.56 4.28 16
17 N -0.38 -9.97 3.68 -348.05 -1.28 -11.25 16
18 C 0.05 1.00 11.45 83.54 0.96 1.96 16
19 C -0.28 -5.33 10.80 21.99 0.24 -5.09 16
20 C 0.03 0.76 12.03 85.24 1.03 1.78 16
21 N -0.35 -10.50 12.42 -57.02 -0.71 -11.21 16
22 H 0.06 1.57 6.75 -2.39 -0.02 1.55 16
23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
24 H 0.06 1.80 6.48 -2.38 -0.02 1.78 16
25 H 0.03 1.26 5.15 -2.38 -0.01 1.25 16
26 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16
27 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16
28 H 0.04 1.03 6.51 -2.39 -0.02 1.01 16
29 H 0.06 2.09 6.03 -2.39 -0.01 2.07 16
30 H 0.08 1.98 6.47 -2.39 -0.02 1.96 16
31 H 0.04 1.18 6.94 -2.39 -0.02 1.17 16
32 H 0.06 2.05 8.00 -2.38 -0.02 2.03 16
33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
34 H 0.12 2.46 6.48 -2.39 -0.02 2.45 16
35 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16
36 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16
37 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16
Total: -1.00 -72.67 296.71 2.95 -69.72
By element:
Atomic # 1 Polarization: 11.72 SS G_CDS: 0.98 Total: 12.70 kcal
Atomic # 6 Polarization: -27.54 SS G_CDS: 5.78 Total: -21.76 kcal
Atomic # 7 Polarization: -101.32 SS G_CDS: -5.69 Total: -107.01 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal
Total: -72.67 2.95 -69.72 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000276310947.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.436 kcal
(2) G-P(sol) polarization free energy of solvation -72.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds