Wall clock time and date at job start Sun Mar 29 2020 21:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47404 * 2 1 4 4 C 1.53002 * 109.46795 * 119.99465 * 2 1 3 5 5 C 1.50699 * 109.46955 * 183.54617 * 4 2 1 6 6 H 1.07999 * 120.00573 * 5.03208 * 5 4 2 7 7 C 1.37884 * 120.00058 * 185.02768 * 5 4 2 8 8 N 1.31517 * 119.99570 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00140 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47131 * 90.00145 * 9 7 5 11 11 H 1.48501 * 109.47435 * 209.99680 * 9 7 5 12 12 H 1.48498 * 109.47328 * 330.00163 * 9 7 5 13 13 N 1.46899 * 109.47468 * 239.99316 * 2 1 3 14 14 C 1.46904 * 110.99836 * 73.04587 * 13 2 1 15 15 C 1.46887 * 111.00409 * 309.08936 * 13 2 1 16 16 C 1.53002 * 109.47582 * 189.99688 * 15 13 2 17 17 N 1.46492 * 109.47347 * 179.97438 * 16 15 13 18 18 C 1.34955 * 126.03889 * 125.00029 * 17 16 15 19 19 C 1.35316 * 107.74748 * 179.97438 * 18 17 16 20 20 C 1.39876 * 107.92017 * 359.97438 * 19 18 17 21 21 N 1.30832 * 108.20066 * 359.74375 * 20 19 18 22 22 H 1.08998 * 109.46927 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47342 * 300.00423 * 1 2 3 24 24 H 1.09001 * 109.46786 * 60.00436 * 1 2 3 25 25 H 1.08997 * 109.47270 * 303.54890 * 4 2 1 26 26 H 1.08997 * 109.47015 * 63.54793 * 4 2 1 27 27 H 0.96998 * 119.99785 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47332 * 53.84943 * 14 13 2 29 29 H 1.08995 * 109.47615 * 173.85370 * 14 13 2 30 30 H 1.09000 * 109.46505 * 293.85706 * 14 13 2 31 31 H 1.09006 * 109.47217 * 310.00059 * 15 13 2 32 32 H 1.08998 * 109.47258 * 69.99472 * 15 13 2 33 33 H 1.08996 * 109.47014 * 299.99901 * 16 15 13 34 34 H 1.09002 * 109.46883 * 60.00124 * 16 15 13 35 35 H 1.07995 * 126.12329 * 359.97438 * 18 17 16 36 36 H 1.07998 * 126.04111 * 180.02562 * 19 18 17 37 37 H 1.07994 * 125.89581 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5443 -0.6455 1.2941 6 1 4.0782 -0.0661 0.5554 7 6 4.2394 -1.3161 2.2782 8 7 3.5894 -2.0221 3.1775 9 14 6.1041 -1.2217 2.3341 10 1 6.5165 -0.0692 3.1750 11 1 6.6461 -2.4767 2.9143 12 1 6.6323 -1.0442 0.9577 13 7 2.0197 -0.6926 -1.1993 14 6 1.8182 0.1285 -2.4006 15 6 1.3801 -2.0067 -1.3465 16 6 2.0860 -2.7969 -2.4502 17 7 1.4485 -4.1077 -2.5966 18 6 0.9425 -4.6216 -3.7372 19 6 0.4463 -5.8478 -3.4526 20 6 0.6567 -6.0920 -2.0915 21 7 1.2626 -5.0520 -1.5787 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6256 -0.2453 2.1381 26 1 1.7294 -1.7655 1.2182 27 1 4.0783 -2.4941 3.8696 28 1 2.2682 1.1097 -2.2498 29 1 2.2862 -0.3582 -3.2562 30 1 0.7504 0.2434 -2.5871 31 1 1.4516 -2.5530 -0.4059 32 1 0.3310 -1.8727 -1.6099 33 1 2.0145 -2.2506 -3.3907 34 1 3.1352 -2.9310 -2.1868 35 1 0.9350 -4.1402 -4.7040 36 1 -0.0277 -6.5197 -4.1529 37 1 0.3719 -6.9863 -1.5572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276310951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:31 Heat of formation + Delta-G solvation = 83.070304 kcal Electronic energy + Delta-G solvation = -17113.421440 eV Core-core repulsion = 14506.832522 eV Total energy + Delta-G solvation = -2606.588919 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91189 -38.08127 -33.78231 -32.61709 -30.74207 -29.93516 -28.15531 -27.24864 -25.23729 -23.32690 -22.11790 -20.90540 -20.31419 -18.70889 -17.08381 -16.16642 -15.46183 -14.93836 -14.65089 -14.42311 -14.07897 -13.75448 -13.24507 -13.15049 -12.68257 -12.50683 -11.95801 -11.89583 -11.66399 -11.60089 -11.42035 -10.93827 -10.60074 -10.57480 -10.40318 -10.23516 -9.99880 -9.25029 -9.17447 -8.95287 -8.42480 -8.22340 -7.59668 -5.84723 -3.82732 2.11063 2.71993 3.02697 3.41123 3.47571 3.51673 4.44906 4.59519 4.80921 4.94243 5.23297 5.31140 5.51886 5.55088 5.57328 5.66930 5.70262 5.77153 5.87055 5.93081 6.00388 6.10866 6.14012 6.22186 6.34590 6.54919 6.65978 6.82981 6.95988 7.20683 7.47528 7.62615 7.85267 7.94370 7.99080 8.14615 8.59868 9.21998 9.78512 11.27310 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.007269 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.415495 B = 3850.954038 C = 4533.743616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.490 4.490 6 H 0.058 0.942 7 C 0.052 3.948 8 N -0.901 5.901 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.512 5.512 14 C 0.018 3.982 15 C 0.049 3.951 16 C 0.134 3.866 17 N -0.362 5.362 18 C 0.046 3.954 19 C -0.282 4.282 20 C 0.033 3.967 21 N -0.279 5.279 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.257 0.743 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.102 0.898 32 H 0.028 0.972 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.169 0.831 36 H 0.142 0.858 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 -2.097 -14.244 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.235 5.235 14 C -0.130 4.130 15 C -0.079 4.079 16 C 0.013 3.987 17 N -0.144 5.144 18 C -0.101 4.101 19 C -0.312 4.312 20 C -0.153 4.153 21 N -0.100 5.100 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.120 0.880 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.186 0.814 36 H 0.160 0.840 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.524 -1.598 -12.961 14.180 hybrid contribution -0.217 -0.268 -0.850 0.917 sum -5.740 -1.867 -13.811 15.073 Atomic orbital electron populations 1.22524 0.99616 1.01402 1.00716 1.21942 0.90118 0.98158 0.91705 0.91033 1.19212 0.96462 0.95625 0.89554 1.21100 0.91459 1.29178 1.11154 0.92328 1.24994 0.97955 0.95793 0.96037 1.69961 1.35149 1.32728 1.16333 0.86650 0.86538 0.77089 0.78009 1.21037 1.21558 1.19975 1.62022 1.57469 1.01794 1.02226 1.22476 0.98351 0.98522 0.93695 1.22276 0.94234 0.91382 1.00036 1.21820 0.98366 0.77982 1.00556 1.48857 1.45089 1.14553 1.05949 1.22529 0.99240 0.95972 0.92312 1.21440 1.14000 0.98800 0.96981 1.23898 0.99063 0.98080 0.94286 1.77565 1.20621 0.99350 1.12488 0.92865 0.92367 0.94235 0.96640 0.95798 0.93310 0.91566 0.92383 0.96486 0.87984 0.95404 0.89333 0.88480 0.81418 0.83991 0.80367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.41 37.16 0.31 -2.88 16 2 C 0.09 1.79 2.26 -67.71 -0.15 1.64 16 3 H 0.07 1.45 7.92 -51.93 -0.41 1.04 16 4 C 0.03 0.73 4.41 -27.88 -0.12 0.61 16 5 C -0.49 -13.82 8.80 -34.44 -0.30 -14.13 16 6 H 0.06 1.64 7.75 -52.49 -0.41 1.23 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.51 -9.48 4.36 -234.89 -1.03 -10.51 16 14 C 0.02 0.26 9.00 60.07 0.54 0.80 16 15 C 0.05 0.88 4.00 -3.83 -0.02 0.87 16 16 C 0.13 2.05 6.43 -4.05 -0.03 2.02 16 17 N -0.36 -5.68 3.68 -61.37 -0.23 -5.91 16 18 C 0.05 0.58 11.45 -17.22 -0.20 0.38 16 19 C -0.28 -3.47 10.80 -40.01 -0.43 -3.91 16 20 C 0.03 0.47 12.03 -17.36 -0.21 0.26 16 21 N -0.28 -5.01 12.42 30.62 0.38 -4.63 16 22 H 0.05 0.95 6.53 -51.93 -0.34 0.61 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.04 0.60 6.94 -51.93 -0.36 0.24 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.67 6.35 -51.93 -0.33 0.34 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 29 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 30 H 0.02 0.23 6.98 -51.93 -0.36 -0.14 16 31 H 0.10 2.25 6.18 -51.93 -0.32 1.93 16 32 H 0.03 0.48 6.81 -51.93 -0.35 0.12 16 33 H 0.09 1.06 6.53 -51.93 -0.34 0.72 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.18 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -32.51 301.11 -6.97 -39.48 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.65 Total: -0.46 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.70 Total: -12.91 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.13 Total: -47.99 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.51 -6.97 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276310951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.554 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds