Wall clock time and date at job start Sun Mar 29 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47404 * 2 1 4 4 C 1.53002 * 109.46795 * 119.99465 * 2 1 3 5 5 C 1.50699 * 109.46955 * 183.54617 * 4 2 1 6 6 H 1.07999 * 120.00573 * 5.03208 * 5 4 2 7 7 C 1.37884 * 120.00058 * 185.02768 * 5 4 2 8 8 N 1.31517 * 119.99570 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00140 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47131 * 90.00145 * 9 7 5 11 11 H 1.48501 * 109.47435 * 209.99680 * 9 7 5 12 12 H 1.48498 * 109.47328 * 330.00163 * 9 7 5 13 13 N 1.46899 * 109.47468 * 239.99316 * 2 1 3 14 14 C 1.46904 * 110.99836 * 73.04587 * 13 2 1 15 15 C 1.46887 * 111.00409 * 309.08936 * 13 2 1 16 16 C 1.53002 * 109.47582 * 189.99688 * 15 13 2 17 17 N 1.46492 * 109.47347 * 179.97438 * 16 15 13 18 18 C 1.34955 * 126.03889 * 125.00029 * 17 16 15 19 19 C 1.35316 * 107.74748 * 179.97438 * 18 17 16 20 20 C 1.39876 * 107.92017 * 359.97438 * 19 18 17 21 21 N 1.30832 * 108.20066 * 359.74375 * 20 19 18 22 22 H 1.08998 * 109.46927 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47342 * 300.00423 * 1 2 3 24 24 H 1.09001 * 109.46786 * 60.00436 * 1 2 3 25 25 H 1.08997 * 109.47270 * 303.54890 * 4 2 1 26 26 H 1.08997 * 109.47015 * 63.54793 * 4 2 1 27 27 H 0.96998 * 119.99785 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47332 * 53.84943 * 14 13 2 29 29 H 1.08995 * 109.47615 * 173.85370 * 14 13 2 30 30 H 1.09000 * 109.46505 * 293.85706 * 14 13 2 31 31 H 1.09006 * 109.47217 * 310.00059 * 15 13 2 32 32 H 1.08998 * 109.47258 * 69.99472 * 15 13 2 33 33 H 1.08996 * 109.47014 * 299.99901 * 16 15 13 34 34 H 1.09002 * 109.46883 * 60.00124 * 16 15 13 35 35 H 1.07995 * 126.12329 * 359.97438 * 18 17 16 36 36 H 1.07998 * 126.04111 * 180.02562 * 19 18 17 37 37 H 1.07994 * 125.89581 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5443 -0.6455 1.2941 6 1 4.0782 -0.0661 0.5554 7 6 4.2394 -1.3161 2.2782 8 7 3.5894 -2.0221 3.1775 9 14 6.1041 -1.2217 2.3341 10 1 6.5165 -0.0692 3.1750 11 1 6.6461 -2.4767 2.9143 12 1 6.6323 -1.0442 0.9577 13 7 2.0197 -0.6926 -1.1993 14 6 1.8182 0.1285 -2.4006 15 6 1.3801 -2.0067 -1.3465 16 6 2.0860 -2.7969 -2.4502 17 7 1.4485 -4.1077 -2.5966 18 6 0.9425 -4.6216 -3.7372 19 6 0.4463 -5.8478 -3.4526 20 6 0.6567 -6.0920 -2.0915 21 7 1.2626 -5.0520 -1.5787 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6256 -0.2453 2.1381 26 1 1.7294 -1.7655 1.2182 27 1 4.0783 -2.4941 3.8696 28 1 2.2682 1.1097 -2.2498 29 1 2.2862 -0.3582 -3.2562 30 1 0.7504 0.2434 -2.5871 31 1 1.4516 -2.5530 -0.4059 32 1 0.3310 -1.8727 -1.6099 33 1 2.0145 -2.2506 -3.3907 34 1 3.1352 -2.9310 -2.1868 35 1 0.9350 -4.1402 -4.7040 36 1 -0.0277 -6.5197 -4.1529 37 1 0.3719 -6.9863 -1.5572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276310951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:30 Heat of formation + Delta-G solvation = 60.859162 kcal Electronic energy + Delta-G solvation = -17114.384588 eV Core-core repulsion = 14506.832522 eV Total energy + Delta-G solvation = -2607.552066 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.97741 -39.55444 -35.37512 -34.41615 -32.33302 -31.02137 -29.47953 -29.02991 -26.53794 -25.11254 -23.72825 -21.91550 -21.49990 -20.25246 -18.37594 -18.18835 -16.85663 -16.57822 -16.12266 -15.85872 -15.45238 -14.94618 -14.58503 -14.46872 -14.09877 -13.70946 -13.60803 -13.42083 -13.14440 -13.05003 -12.89978 -12.66797 -12.44820 -12.27271 -12.02255 -11.76856 -11.41279 -11.11717 -11.02741 -10.48695 -10.38258 -9.46813 -9.00327 -8.09917 -6.15061 1.07873 1.39805 1.41872 1.52527 1.65201 2.02353 2.46635 3.10394 3.27255 3.66812 4.01641 4.07893 4.14763 4.17328 4.27220 4.38804 4.44718 4.59213 4.61183 4.73821 4.83590 4.90402 4.95639 5.07701 5.09217 5.16140 5.20171 5.22228 5.45725 5.66582 5.79447 5.88222 6.20865 6.24721 6.38971 6.48318 6.87593 6.98989 7.50636 9.02528 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019947 B = 0.007269 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.415495 B = 3850.954038 C = 4533.743616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.075 0.925 4 C 0.034 3.966 5 C -0.496 4.496 6 H 0.062 0.938 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.533 5.533 14 C 0.019 3.981 15 C 0.064 3.936 16 C 0.142 3.858 17 N -0.378 5.378 18 C 0.054 3.946 19 C -0.284 4.284 20 C 0.028 3.972 21 N -0.352 5.352 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.071 0.929 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.257 0.743 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.133 0.867 34 H 0.072 0.928 35 H 0.213 0.787 36 H 0.175 0.825 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -1.395 -17.422 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.093 0.907 4 C -0.003 4.003 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.188 1.188 13 N -0.257 5.257 14 C -0.129 4.129 15 C -0.065 4.065 16 C 0.021 3.979 17 N -0.161 5.161 18 C -0.092 4.092 19 C -0.313 4.313 20 C -0.157 4.157 21 N -0.174 5.174 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.230 0.770 36 H 0.192 0.808 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.498 -0.889 -16.163 17.096 hybrid contribution -0.289 -0.531 0.101 0.612 sum -5.786 -1.420 -16.063 17.132 Atomic orbital electron populations 1.22376 0.97361 1.01080 1.02285 1.21634 0.91910 0.97305 0.90362 0.90682 1.19064 0.95538 0.94072 0.91646 1.21455 0.92803 1.28444 1.10700 0.92025 1.25906 1.03097 0.95594 0.95811 1.70117 1.37105 1.33977 1.17242 0.85559 0.80464 0.77164 0.78513 1.19825 1.21706 1.18839 1.61888 1.58110 1.02504 1.03242 1.22568 0.99818 0.98207 0.92265 1.22006 0.95104 0.90936 0.98449 1.21717 0.96510 0.78284 1.01392 1.48881 1.46215 1.14427 1.06617 1.23323 0.97184 0.95925 0.92776 1.21875 1.13685 0.99367 0.96384 1.24436 0.97735 0.97817 0.95750 1.77516 1.23546 1.01320 1.15050 0.94101 0.92351 0.91025 0.99370 0.99213 0.93434 0.91146 0.89758 0.94822 0.93546 0.94589 0.84915 0.90986 0.77002 0.80787 0.78463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 8.41 71.98 0.61 -5.28 16 2 C 0.10 3.91 2.26 44.92 0.10 4.01 16 3 H 0.08 2.98 7.92 -2.39 -0.02 2.97 16 4 C 0.03 1.83 4.41 29.85 0.13 1.97 16 5 C -0.50 -28.71 8.80 25.60 0.23 -28.49 16 6 H 0.06 3.46 7.75 -2.91 -0.02 3.44 16 7 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 8 N -0.94 -60.29 13.29 21.45 0.28 -60.00 16 9 Si 0.96 46.66 29.54 68.60 2.03 48.68 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.53 -19.35 4.36 -897.07 -3.92 -23.26 16 14 C 0.02 0.48 9.00 127.69 1.15 1.63 16 15 C 0.06 2.30 4.00 86.31 0.34 2.65 16 16 C 0.14 4.21 6.43 86.38 0.56 4.77 16 17 N -0.38 -11.56 3.68 -348.08 -1.28 -12.84 16 18 C 0.05 1.18 11.45 83.54 0.96 2.13 16 19 C -0.28 -6.25 10.80 21.99 0.24 -6.01 16 20 C 0.03 0.79 12.03 85.24 1.03 1.81 16 21 N -0.35 -13.01 12.42 -57.03 -0.71 -13.72 16 22 H 0.04 1.48 6.53 -2.39 -0.02 1.46 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.07 1.99 6.94 -2.39 -0.02 1.97 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H -0.01 -0.63 6.35 -2.39 -0.02 -0.65 16 27 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.07 1.74 7.98 -2.39 -0.02 1.72 16 29 H 0.08 1.70 6.57 -2.39 -0.02 1.68 16 30 H 0.03 0.76 6.98 -2.39 -0.02 0.74 16 31 H 0.05 2.20 6.18 -2.38 -0.01 2.18 16 32 H 0.04 1.21 6.81 -2.39 -0.02 1.20 16 33 H 0.13 2.66 6.53 -2.39 -0.02 2.65 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.21 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.20 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -75.01 301.11 3.24 -71.77 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.03 Total: 10.21 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 5.79 Total: -20.84 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -5.62 Total: -109.82 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.01 3.24 -71.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276310951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.629 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds