Wall clock time and date at job start Sun Mar 29 2020 21:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 14 14 C 1.46899 * 110.99821 * 274.99962 * 13 2 1 15 15 H 1.08997 * 109.47539 * 34.99628 * 14 13 2 16 16 C 1.53006 * 109.46848 * 274.99782 * 14 13 2 17 17 C 1.50697 * 109.47061 * 155.00243 * 14 13 2 18 18 C 1.39870 * 126.04229 * 40.01759 * 17 14 13 19 19 N 1.30836 * 108.20270 * 179.97438 * 18 17 14 20 20 N 1.40086 * 108.20682 * 0.02562 * 19 18 17 21 21 C 1.46498 * 126.03774 * 179.97438 * 20 19 18 22 22 C 1.34949 * 107.92355 * 359.75338 * 20 19 18 23 23 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 25 25 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 26 26 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 27 27 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 28 28 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 29 29 H 1.00899 * 110.99665 * 38.95144 * 13 2 1 30 30 H 1.08997 * 109.47304 * 179.97438 * 16 14 13 31 31 H 1.08997 * 109.46925 * 300.00222 * 16 14 13 32 32 H 1.09002 * 109.46887 * 60.00071 * 16 14 13 33 33 H 1.08002 * 125.89573 * 0.02562 * 18 17 14 34 34 H 1.08997 * 109.47174 * 89.97536 * 21 20 19 35 35 H 1.09003 * 109.46833 * 209.97126 * 21 20 19 36 36 H 1.09001 * 109.46993 * 329.96906 * 21 20 19 37 37 H 1.07997 * 126.13053 * 180.24703 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 5.5408 -1.0995 -2.4141 9 14 3.3012 -2.1078 -3.6960 10 1 2.9395 -1.1626 -4.7827 11 1 4.1599 -3.1878 -4.2448 12 1 2.0656 -2.7003 -3.1238 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9808 2.3223 17 6 1.9787 -0.5677 3.6258 18 6 2.5854 -1.8016 3.8823 19 7 2.2650 -2.1701 5.0961 20 7 1.4425 -1.1812 5.6510 21 6 0.8594 -1.1993 6.9949 22 6 1.2862 -0.2065 4.7308 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.7514 -1.7715 -1.2057 27 1 1.6052 -0.2617 -2.1370 28 1 6.0252 -1.5063 -3.1496 29 1 1.4495 -1.4980 1.4099 30 1 3.4577 1.6601 3.1734 31 1 4.2359 0.2704 2.3785 32 1 3.4863 1.5523 1.3972 33 1 3.2110 -2.3543 3.1971 34 1 1.5441 -0.7201 7.6945 35 1 -0.0881 -0.6604 6.9871 36 1 0.6881 -2.2308 7.3027 37 1 0.7099 0.6985 4.8535 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278937552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:48 Heat of formation + Delta-G solvation = 73.839401 kcal Electronic energy + Delta-G solvation = -16889.395617 eV Core-core repulsion = 14282.406416 eV Total energy + Delta-G solvation = -2606.989201 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09189 -37.16220 -33.82519 -32.61699 -31.78958 -29.42122 -28.12137 -27.30997 -26.49460 -22.98592 -21.94164 -20.99672 -19.56852 -19.41434 -16.82304 -16.46564 -15.42367 -14.99445 -14.69288 -14.14489 -13.86269 -13.74192 -13.01862 -12.84443 -12.66475 -12.56012 -12.28789 -12.19021 -11.73027 -11.54083 -11.49520 -11.11615 -10.87019 -10.57787 -10.33727 -10.07548 -9.62328 -9.49307 -9.29700 -8.94329 -8.34153 -8.23294 -7.50599 -5.82415 -3.75372 1.96523 2.58659 2.99407 3.41855 3.49779 3.53262 4.47514 4.62520 4.78736 4.94706 4.97362 5.19010 5.24907 5.50718 5.55762 5.60536 5.71759 5.83999 5.93056 5.94486 6.05012 6.14971 6.29187 6.45816 6.57190 6.60771 6.82586 6.87503 6.99008 7.05956 7.24990 7.44447 7.81347 7.94885 8.04131 8.23586 8.82135 9.30595 9.81401 11.31733 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034827 B = 0.005567 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.785887 B = 5028.152767 C = 5224.453197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.485 4.485 6 H 0.079 0.921 7 C 0.060 3.940 8 N -0.911 5.911 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.655 5.655 14 C 0.164 3.836 15 H 0.036 0.964 16 C -0.130 4.130 17 C -0.226 4.226 18 C 0.074 3.926 19 N -0.306 5.306 20 N -0.385 5.385 21 C 0.106 3.894 22 C 0.048 3.952 23 H 0.049 0.951 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.015 0.985 27 H 0.010 0.990 28 H 0.258 0.742 29 H 0.332 0.668 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.190 0.810 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 2.809 15.524 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.011 4.011 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.523 4.523 6 H 0.097 0.903 7 C -0.139 4.139 8 N -0.551 5.551 9 Si 0.701 3.299 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.285 5.285 14 C 0.053 3.947 15 H 0.054 0.946 16 C -0.188 4.188 17 C -0.237 4.237 18 C -0.113 4.113 19 N -0.127 5.127 20 N -0.168 5.168 21 C -0.036 4.036 22 C -0.098 4.098 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.207 0.793 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.634 1.937 16.315 19.571 hybrid contribution -1.485 0.222 -1.154 1.894 sum -12.119 2.159 15.161 19.529 Atomic orbital electron populations 1.22597 0.99711 1.01120 1.00703 1.21581 0.89472 0.98372 0.91709 0.91126 1.19600 0.97844 0.95377 0.91360 1.21072 0.89512 1.33409 1.08323 0.90255 1.25006 0.94646 0.96388 0.97881 1.69914 1.06415 1.46494 1.32317 0.86900 0.80245 0.80021 0.82723 1.20790 1.21771 1.19326 1.60566 1.57541 1.08354 1.02056 1.19705 0.96961 0.92233 0.85804 0.94612 1.21747 0.97286 0.99409 1.00396 1.20309 1.06650 0.99017 0.97769 1.23926 0.98736 0.95517 0.93103 1.77371 1.11867 1.12365 1.11141 1.48415 1.39753 1.15817 1.12800 1.21751 0.97952 1.04305 0.79611 1.22237 1.02324 0.95113 0.90176 0.93170 0.94116 0.92633 0.96663 0.97186 0.93208 0.85027 0.94073 0.91733 0.92149 0.79301 0.91143 0.89890 0.89570 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.15 37.16 0.34 -2.54 16 2 C 0.10 1.89 2.34 -67.71 -0.16 1.73 16 3 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.20 16 5 C -0.48 -13.72 9.39 -34.44 -0.32 -14.05 16 6 H 0.08 2.43 7.99 -52.48 -0.42 2.01 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 9 Si 0.87 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.65 -11.90 5.57 -100.95 -0.56 -12.46 16 14 C 0.16 2.55 2.86 -68.86 -0.20 2.35 16 15 H 0.04 0.52 7.11 -51.93 -0.37 0.16 16 16 C -0.13 -2.15 9.38 37.16 0.35 -1.80 16 17 C -0.23 -3.26 4.81 -105.05 -0.51 -3.77 16 18 C 0.07 1.14 11.46 -17.37 -0.20 0.94 16 19 N -0.31 -4.71 12.58 30.62 0.39 -4.33 16 20 N -0.39 -4.76 4.01 -68.16 -0.27 -5.03 16 21 C 0.11 0.78 11.47 59.85 0.69 1.47 16 22 C 0.05 0.57 11.40 -17.22 -0.20 0.38 16 23 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 24 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.33 5.77 7.89 -39.29 -0.31 5.46 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.08 7.43 -51.93 -0.39 0.70 16 33 H 0.19 2.95 8.06 -52.49 -0.42 2.52 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -32.98 306.92 -6.10 -39.08 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.98 Total: 2.25 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -0.41 Total: -13.81 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.32 Total: -49.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.98 -6.10 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.922 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds