Wall clock time and date at job start Sun Mar 29 2020 21:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.53006 * 109.46646 * 240.00025 * 2 1 3 5 5 C 1.50699 * 109.46866 * 175.00111 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00305 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99832 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46901 * 89.99815 * 9 7 5 11 11 H 1.48488 * 109.47487 * 210.00255 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00635 * 9 7 5 13 13 N 1.46901 * 109.47202 * 120.00278 * 2 1 3 14 14 C 1.46899 * 110.99821 * 274.99962 * 13 2 1 15 15 H 1.08997 * 109.47539 * 34.99628 * 14 13 2 16 16 C 1.53006 * 109.46848 * 274.99782 * 14 13 2 17 17 C 1.50697 * 109.47061 * 155.00243 * 14 13 2 18 18 C 1.39870 * 126.04229 * 40.01759 * 17 14 13 19 19 N 1.30836 * 108.20270 * 179.97438 * 18 17 14 20 20 N 1.40086 * 108.20682 * 0.02562 * 19 18 17 21 21 C 1.46498 * 126.03774 * 179.97438 * 20 19 18 22 22 C 1.34949 * 107.92355 * 359.75338 * 20 19 18 23 23 H 1.08990 * 109.47621 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46731 * 299.99878 * 1 2 3 25 25 H 1.09004 * 109.47394 * 59.99257 * 1 2 3 26 26 H 1.08993 * 109.46955 * 295.00330 * 4 2 1 27 27 H 1.09000 * 109.47050 * 55.00158 * 4 2 1 28 28 H 0.97002 * 120.00008 * 179.97438 * 8 7 5 29 29 H 1.00899 * 110.99665 * 38.95144 * 13 2 1 30 30 H 1.08997 * 109.47304 * 179.97438 * 16 14 13 31 31 H 1.08997 * 109.46925 * 300.00222 * 16 14 13 32 32 H 1.09002 * 109.46887 * 60.00071 * 16 14 13 33 33 H 1.08002 * 125.89573 * 0.02562 * 18 17 14 34 34 H 1.08997 * 109.47174 * 89.97536 * 21 20 19 35 35 H 1.09003 * 109.46833 * 209.97126 * 21 20 19 36 36 H 1.09001 * 109.46993 * 329.96906 * 21 20 19 37 37 H 1.07997 * 126.13053 * 180.24703 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6150 -1.3128 6 1 4.0788 -0.0856 -0.5397 7 6 4.2302 -1.1927 -2.3584 8 7 5.5408 -1.0995 -2.4141 9 14 3.3012 -2.1078 -3.6960 10 1 2.9395 -1.1626 -4.7827 11 1 4.1599 -3.1878 -4.2448 12 1 2.0656 -2.7003 -3.1238 13 7 2.0197 -0.6926 1.1994 14 6 2.0825 0.2225 2.3469 15 1 1.2577 0.9329 2.2907 16 6 3.4112 0.9808 2.3223 17 6 1.9787 -0.5677 3.6258 18 6 2.5854 -1.8016 3.8823 19 7 2.2650 -2.1701 5.0961 20 7 1.4425 -1.1812 5.6510 21 6 0.8594 -1.1993 6.9949 22 6 1.2862 -0.2065 4.7308 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 1.7514 -1.7715 -1.2057 27 1 1.6052 -0.2617 -2.1370 28 1 6.0252 -1.5063 -3.1496 29 1 1.4495 -1.4980 1.4099 30 1 3.4577 1.6601 3.1734 31 1 4.2359 0.2704 2.3785 32 1 3.4863 1.5523 1.3972 33 1 3.2110 -2.3543 3.1971 34 1 1.5441 -0.7201 7.6945 35 1 -0.0881 -0.6604 6.9871 36 1 0.6881 -2.2308 7.3027 37 1 0.7099 0.6985 4.8535 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278937552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:48 Heat of formation + Delta-G solvation = 50.722831 kcal Electronic energy + Delta-G solvation = -16890.398026 eV Core-core repulsion = 14282.406416 eV Total energy + Delta-G solvation = -2607.991611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11847 -38.57903 -35.29247 -34.16847 -33.27768 -30.63705 -29.81856 -28.72384 -27.35667 -24.73603 -23.34808 -22.05001 -20.96621 -20.68551 -18.70084 -17.82227 -16.39797 -16.33485 -16.24648 -15.57215 -15.13671 -15.09809 -14.63842 -14.07037 -13.81698 -13.69108 -13.62694 -13.34399 -13.33150 -13.14515 -12.77373 -12.49008 -12.44680 -12.18175 -11.91567 -11.56532 -11.38408 -11.26732 -11.05052 -10.61033 -10.30013 -9.27611 -8.88157 -8.10460 -6.07892 0.98674 1.40095 1.42868 1.53693 1.76170 1.86379 2.47888 3.23109 3.46162 3.75955 4.06999 4.23586 4.34597 4.42833 4.44363 4.48266 4.53153 4.66370 4.72275 4.74926 4.89513 4.91844 4.99834 5.16005 5.20124 5.21878 5.30224 5.39516 5.54191 5.64901 5.72314 5.84295 6.20626 6.48474 6.63335 6.79783 6.87194 7.01549 7.52405 9.07062 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034827 B = 0.005567 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.785887 B = 5028.152767 C = 5224.453197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.003 4.003 5 C -0.482 4.482 6 H 0.039 0.961 7 C -0.006 4.006 8 N -0.962 5.962 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.250 1.250 13 N -0.677 5.677 14 C 0.174 3.826 15 H 0.057 0.943 16 C -0.125 4.125 17 C -0.248 4.248 18 C 0.055 3.945 19 N -0.337 5.337 20 N -0.380 5.380 21 C 0.094 3.906 22 C 0.070 3.930 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.258 0.742 29 H 0.336 0.664 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.172 0.828 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.767 3.394 16.671 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 H 0.077 0.923 4 C -0.041 4.041 5 C -0.521 4.521 6 H 0.057 0.943 7 C -0.200 4.200 8 N -0.605 5.605 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.220 1.220 12 H -0.174 1.174 13 N -0.308 5.308 14 C 0.064 3.936 15 H 0.075 0.925 16 C -0.183 4.183 17 C -0.260 4.260 18 C -0.130 4.130 19 N -0.160 5.160 20 N -0.162 5.162 21 C -0.046 4.046 22 C -0.078 4.078 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.189 0.811 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.920 2.516 17.491 22.495 hybrid contribution -0.427 0.099 -1.348 1.417 sum -14.346 2.615 16.143 21.755 Atomic orbital electron populations 1.22432 0.96248 1.01933 1.02280 1.21356 0.92113 0.96909 0.90323 0.92320 1.19579 0.94513 0.95883 0.94143 1.21362 0.92134 1.31828 1.06750 0.94256 1.25934 0.95458 0.97795 1.00859 1.70091 1.08460 1.48392 1.33560 0.85763 0.79229 0.78627 0.79527 1.19586 1.21962 1.17409 1.60404 1.58220 1.09309 1.02910 1.19569 0.96528 0.92057 0.85463 0.92505 1.21704 0.97314 0.99030 1.00277 1.20190 1.08566 0.98914 0.98341 1.23779 0.99411 0.96434 0.93404 1.77298 1.13364 1.14129 1.11179 1.48821 1.38359 1.14872 1.14165 1.22187 0.99640 1.05319 0.77408 1.22776 1.00667 0.95635 0.88731 0.92714 0.91687 0.91913 0.96872 0.96522 0.93296 0.84558 0.91389 0.94807 0.94478 0.81114 0.89701 0.86403 0.89420 0.77235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 9.15 71.98 0.66 -4.18 16 2 C 0.10 3.86 2.34 44.92 0.11 3.97 16 3 H 0.06 2.33 7.11 -2.39 -0.02 2.31 16 4 C 0.00 -0.16 3.72 29.85 0.11 -0.05 16 5 C -0.48 -28.10 9.39 25.60 0.24 -27.86 16 6 H 0.04 2.54 7.99 -2.91 -0.02 2.52 16 7 C -0.01 -0.38 5.47 84.65 0.46 0.08 16 8 N -0.96 -62.66 13.96 21.45 0.30 -62.36 16 9 Si 0.94 46.07 27.47 68.60 1.88 47.96 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 13 N -0.68 -24.59 5.57 -473.30 -2.64 -27.22 16 14 C 0.17 5.25 2.86 44.17 0.13 5.38 16 15 H 0.06 1.49 7.11 -2.39 -0.02 1.47 16 16 C -0.13 -4.21 9.38 71.98 0.68 -3.53 16 17 C -0.25 -6.84 4.81 -20.14 -0.10 -6.94 16 18 C 0.05 1.73 11.46 85.24 0.98 2.71 16 19 N -0.34 -10.20 12.58 -57.02 -0.72 -10.92 16 20 N -0.38 -8.34 4.01 -369.57 -1.48 -9.83 16 21 C 0.09 1.05 11.47 127.77 1.47 2.52 16 22 C 0.07 1.44 11.40 83.54 0.95 2.39 16 23 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 24 H 0.06 1.55 7.43 -2.39 -0.02 1.53 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 27 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 28 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.34 11.54 7.89 -89.69 -0.71 10.83 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.38 7.43 -2.39 -0.02 1.36 16 33 H 0.17 5.78 8.06 -2.91 -0.02 5.76 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -74.31 306.92 3.30 -71.01 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.28 Total: 16.88 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 5.68 Total: -25.52 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.54 Total: -110.33 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal Total: -74.31 3.30 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.733 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds