Wall clock time and date at job start Sun Mar 29 2020 21:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46899 * 109.47404 * 240.00466 * 2 1 3 14 14 C 1.46896 * 111.00161 * 84.99487 * 13 2 1 15 15 H 1.08997 * 109.47494 * 325.00170 * 14 13 2 16 16 C 1.53005 * 109.46994 * 85.00459 * 14 13 2 17 17 C 1.50704 * 109.46958 * 205.00286 * 14 13 2 18 18 C 1.39867 * 126.03805 * 319.68810 * 17 14 13 19 19 N 1.30843 * 108.20287 * 179.81849 * 18 17 14 20 20 N 1.40093 * 108.20062 * 0.44430 * 19 18 17 21 21 C 1.46504 * 126.03581 * 179.74038 * 20 19 18 22 22 C 1.34949 * 107.92456 * 359.71654 * 20 19 18 23 23 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 25 25 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 27 27 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.00906 * 111.00046 * 208.95603 * 13 2 1 30 30 H 1.09003 * 109.46914 * 59.99814 * 16 14 13 31 31 H 1.09001 * 109.46666 * 179.97438 * 16 14 13 32 32 H 1.08998 * 109.46788 * 299.99840 * 16 14 13 33 33 H 1.07996 * 125.90263 * 0.02562 * 18 17 14 34 34 H 1.08996 * 109.46769 * 269.97627 * 21 20 19 35 35 H 1.09000 * 109.46832 * 29.97498 * 21 20 19 36 36 H 1.08994 * 109.46897 * 149.97549 * 21 20 19 37 37 H 1.08002 * 126.12441 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 3.5760 -1.8324 3.3027 9 14 6.0909 -1.0496 2.4437 10 1 6.5826 -0.2804 1.2725 11 1 6.4802 -0.3493 3.6941 12 1 6.6896 -2.4086 2.4306 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 1 1.2575 0.9330 -2.2907 16 6 3.4111 0.9811 -2.3223 17 6 1.9785 -0.5675 -3.6259 18 6 2.5900 -1.7986 -3.8844 19 7 2.2642 -2.1703 -5.0960 20 7 1.4422 -1.1810 -5.6511 21 6 0.8590 -1.1991 -6.9949 22 6 1.2822 -0.2086 -4.7291 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.7517 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1369 28 1 4.0601 -2.2360 4.0401 29 1 2.9174 -1.1204 -1.0287 30 1 4.2359 0.2707 -2.3786 31 1 3.4577 1.6597 -3.1740 32 1 3.4861 1.5526 -1.3972 33 1 3.2192 -2.3492 -3.2009 34 1 1.5436 -0.7198 -7.6945 35 1 0.6880 -2.2307 -7.3028 36 1 -0.0885 -0.6605 -6.9869 37 1 0.7019 0.6942 -4.8501 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278937555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:50 Heat of formation + Delta-G solvation = 64.841701 kcal Electronic energy + Delta-G solvation = -16885.205880 eV Core-core repulsion = 14277.826509 eV Total energy + Delta-G solvation = -2607.379370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96490 -37.08609 -33.78619 -32.67702 -31.74840 -29.38301 -27.40352 -27.30635 -26.44433 -23.20641 -22.18769 -20.92494 -19.54379 -19.20787 -16.66122 -16.28769 -15.33841 -15.02352 -14.63334 -14.22065 -13.96025 -13.64372 -12.93464 -12.87137 -12.67858 -12.43833 -12.32734 -11.79237 -11.62386 -11.43173 -11.23201 -11.07482 -10.86861 -10.60633 -10.38893 -10.22698 -10.08780 -9.20612 -9.19462 -9.00064 -8.36459 -8.11301 -7.50274 -5.98940 -4.01466 2.07854 2.68044 3.11974 3.31575 3.39823 3.42483 4.46570 4.55744 4.91912 5.03824 5.10158 5.25868 5.32035 5.40879 5.60525 5.62554 5.78851 5.98770 5.98936 6.04349 6.23480 6.30571 6.36870 6.47075 6.64548 6.66164 6.92690 7.01378 7.02274 7.17261 7.61498 7.69962 7.92272 8.01980 8.17003 8.37328 8.44143 9.05333 9.62654 11.12097 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.005780 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.310179 B = 4842.922412 C = 5263.467948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.089 3.911 3 H 0.030 0.970 4 C 0.020 3.980 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.159 3.841 15 H 0.072 0.928 16 C -0.173 4.173 17 C -0.200 4.200 18 C 0.072 3.928 19 N -0.308 5.308 20 N -0.386 5.386 21 C 0.107 3.893 22 C 0.042 3.958 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.259 0.741 29 H 0.354 0.646 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.182 0.818 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 4.676 -16.453 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.048 0.952 4 C -0.018 4.018 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.308 5.308 14 C 0.047 3.953 15 H 0.090 0.910 16 C -0.232 4.232 17 C -0.212 4.212 18 C -0.115 4.115 19 N -0.130 5.130 20 N -0.170 5.170 21 C -0.035 4.035 22 C -0.103 4.103 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.176 0.824 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.199 0.801 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.577 3.423 -17.496 18.679 hybrid contribution 1.697 1.241 0.974 2.317 sum -3.880 4.663 -16.522 17.600 Atomic orbital electron populations 1.21801 0.96948 1.01259 0.99244 1.21592 0.93121 0.95965 0.91389 0.95225 1.19281 0.95422 0.96217 0.90833 1.21237 0.92237 1.34343 1.08087 0.92762 1.24986 0.98092 0.95280 0.95764 1.69976 1.35338 1.35854 1.11894 0.86611 0.86167 0.77769 0.77886 1.19805 1.21169 1.21013 1.60579 1.34736 1.31581 1.03868 1.19701 0.96081 0.91738 0.87810 0.90971 1.22471 0.98706 1.00723 1.01347 1.20118 1.05581 0.98673 0.96823 1.23737 0.99181 0.95478 0.93080 1.77324 1.12073 1.12218 1.11338 1.48347 1.39997 1.15906 1.12712 1.21722 0.97901 1.04209 0.79668 1.22161 1.02598 0.95370 0.90209 0.93501 0.94607 0.92746 0.95630 0.96185 0.93081 0.82410 0.92469 0.93331 0.92144 0.80105 0.91323 0.89669 0.89928 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.40 37.15 0.35 -2.08 16 2 C 0.09 1.81 2.40 -67.72 -0.16 1.65 16 3 H 0.03 0.61 7.11 -51.92 -0.37 0.25 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.37 16 5 C -0.52 -14.06 8.12 -34.44 -0.28 -14.34 16 6 H 0.05 1.42 7.49 -52.49 -0.39 1.02 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.67 -12.74 5.80 -100.95 -0.59 -13.32 16 14 C 0.16 2.51 2.83 -68.86 -0.19 2.31 16 15 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 16 C -0.17 -2.66 9.13 37.16 0.34 -2.32 16 17 C -0.20 -3.03 5.09 -105.05 -0.53 -3.56 16 18 C 0.07 1.15 11.67 -17.36 -0.20 0.94 16 19 N -0.31 -4.93 12.58 30.62 0.39 -4.54 16 20 N -0.39 -5.04 4.01 -68.16 -0.27 -5.31 16 21 C 0.11 0.85 11.47 59.85 0.69 1.54 16 22 C 0.04 0.54 11.40 -17.22 -0.20 0.34 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.57 7.43 -51.93 -0.39 0.19 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.35 7.26 6.95 -39.29 -0.27 6.99 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.00 7.43 -51.93 -0.39 0.61 16 33 H 0.18 2.78 8.06 -52.49 -0.42 2.36 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -31.26 309.27 -6.48 -37.74 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.96 Total: 3.72 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.42 Total: -13.55 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.26 Total: -48.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.26 -6.48 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.581 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds