Wall clock time and date at job start Sun Mar 29 2020 21:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47003 * 2 1 4 4 N 1.46903 * 109.46950 * 119.99513 * 2 1 3 5 5 C 1.46903 * 111.00030 * 206.53243 * 4 2 1 6 6 H 1.09003 * 109.46920 * 323.44559 * 5 4 2 7 7 C 1.52994 * 109.47316 * 83.44194 * 5 4 2 8 8 C 1.52998 * 109.46931 * 203.44605 * 5 4 2 9 9 C 1.50697 * 109.47484 * 65.00043 * 8 5 4 10 10 H 1.08006 * 119.99849 * 359.97438 * 9 8 5 11 11 C 1.37878 * 120.00096 * 179.97438 * 9 8 5 12 12 N 1.31512 * 119.99905 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99811 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47307 * 60.00165 * 13 11 9 15 15 H 1.48502 * 109.47126 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47333 * 299.99892 * 13 11 9 17 17 C 1.50699 * 109.47205 * 239.99661 * 2 1 3 18 18 C 1.39871 * 126.03634 * 280.15066 * 17 2 1 19 19 N 1.30839 * 108.19842 * 180.23217 * 18 17 2 20 20 N 1.40086 * 108.20714 * 359.78624 * 19 18 17 21 21 C 1.46496 * 126.03946 * 180.02562 * 20 19 18 22 22 C 1.34950 * 107.92357 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.47390 * 175.31477 * 1 2 3 24 24 H 1.09004 * 109.47545 * 295.30928 * 1 2 3 25 25 H 1.09003 * 109.47548 * 55.31219 * 1 2 3 26 26 H 1.00896 * 110.99818 * 82.57765 * 4 2 1 27 27 H 1.09003 * 109.47263 * 295.03014 * 7 5 4 28 28 H 1.08996 * 109.47208 * 55.02651 * 7 5 4 29 29 H 1.08999 * 109.47505 * 175.02978 * 7 5 4 30 30 H 1.09002 * 109.46974 * 184.99936 * 8 5 4 31 31 H 1.09004 * 109.46965 * 304.99290 * 8 5 4 32 32 H 0.96998 * 119.99733 * 180.02562 * 12 11 9 33 33 H 1.08000 * 125.90179 * 0.02562 * 18 17 2 34 34 H 1.08999 * 109.47426 * 269.97300 * 21 20 19 35 35 H 1.09002 * 109.47276 * 29.97573 * 21 20 19 36 36 H 1.09007 * 109.47258 * 149.96987 * 21 20 19 37 37 H 1.08000 * 126.12717 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.3519 -0.2055 1.5815 6 1 3.9319 0.0080 0.6836 7 6 3.2095 1.0714 2.4122 8 6 4.0679 -1.2750 2.4088 9 6 4.3177 -2.4893 1.5519 10 1 3.9974 -2.4975 0.5205 11 6 4.9551 -3.5897 2.0847 12 7 5.3447 -3.5798 3.3408 13 14 5.2642 -5.0950 1.0227 14 1 6.1104 -4.7171 -0.1375 15 1 5.9592 -6.1331 1.8257 16 1 3.9680 -5.6320 0.5360 17 6 2.0323 -0.7105 -1.2304 18 6 2.1187 -2.0958 -1.4030 19 7 2.6051 -2.3295 -2.5950 20 7 2.8394 -1.0985 -3.2212 21 6 3.3815 -0.9063 -4.5685 22 6 2.4764 -0.1210 -2.3645 23 1 -0.3634 -1.0242 -0.0839 24 1 -0.3634 0.4393 0.9290 25 1 -0.3634 0.5848 -0.8450 26 1 2.0254 -1.6921 1.0629 27 1 2.7797 1.8603 1.7950 28 1 2.5566 0.8799 3.2637 29 1 4.1907 1.3836 2.7697 30 1 5.0191 -0.8811 2.7668 31 1 3.4461 -1.5526 3.2600 32 1 5.7934 -4.3538 3.7154 33 1 1.8361 -2.8434 -0.6766 34 1 4.4685 -0.8433 -4.5173 35 1 3.0956 -1.7484 -5.1988 36 1 2.9837 0.0160 -4.9921 37 1 2.5348 0.9415 -2.5491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278937557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:52 Heat of formation + Delta-G solvation = 65.149054 kcal Electronic energy + Delta-G solvation = -17325.404164 eV Core-core repulsion = 14718.038121 eV Total energy + Delta-G solvation = -2607.366043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93353 -36.94907 -33.71898 -32.61919 -31.74029 -29.26697 -27.62919 -27.30887 -26.29875 -23.06715 -22.10648 -20.83236 -19.51227 -19.15652 -16.73192 -16.22709 -15.22876 -15.02021 -14.56305 -14.30495 -13.95171 -13.31245 -13.20796 -12.75347 -12.60532 -12.36928 -12.10136 -11.83717 -11.68670 -11.34300 -11.20343 -10.93934 -10.78010 -10.55903 -10.38237 -10.25333 -10.01297 -9.21185 -9.03825 -8.96340 -8.32220 -8.06057 -7.57352 -5.94969 -3.96761 2.16988 2.77733 3.17835 3.37777 3.41453 3.46629 4.50974 4.65150 4.95015 5.05876 5.14225 5.30197 5.37940 5.42854 5.64611 5.74317 5.88314 6.01443 6.05172 6.08776 6.28573 6.30230 6.40246 6.53346 6.58136 6.69255 6.98069 7.02840 7.05563 7.25947 7.63913 7.74407 7.99903 8.05895 8.17959 8.39228 8.48050 9.10171 9.67349 11.16090 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.009796 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.087635 B = 2857.671057 C = 3958.064521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.157 3.843 3 H 0.071 0.929 4 N -0.672 5.672 5 C 0.089 3.911 6 H 0.028 0.972 7 C -0.135 4.135 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.885 3.115 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.275 1.275 17 C -0.248 4.248 18 C 0.069 3.931 19 N -0.300 5.300 20 N -0.384 5.384 21 C 0.106 3.894 22 C 0.048 3.952 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.354 0.646 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.018 0.982 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.182 0.818 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 8.597 -11.660 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.045 3.955 3 H 0.089 0.911 4 N -0.305 5.305 5 C -0.021 4.021 6 H 0.046 0.954 7 C -0.193 4.193 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.713 3.287 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.261 4.261 18 C -0.117 4.117 19 N -0.121 5.121 20 N -0.167 5.167 21 C -0.036 4.036 22 C -0.098 4.098 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.176 0.824 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.199 0.801 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.688 8.021 -12.064 15.956 hybrid contribution 0.776 -0.688 -0.773 1.294 sum -5.911 7.333 -12.837 15.922 Atomic orbital electron populations 1.21726 0.94851 1.01508 1.00719 1.19911 0.94334 0.96487 0.84731 0.91092 1.60811 1.26530 1.11139 1.32001 1.21569 0.88210 0.95376 0.96923 0.95388 1.21817 1.00411 0.97070 1.00045 1.19261 0.95036 0.92000 0.95327 1.21205 1.37773 0.99470 0.97271 0.92633 1.24957 0.95782 0.98470 0.94789 1.69953 1.40176 1.30251 1.12881 0.86766 0.78640 0.82911 0.80367 1.20544 1.21437 1.20022 1.21093 1.12390 0.93915 0.98725 1.23715 0.97676 0.96199 0.94150 1.77345 1.22179 1.03011 1.09517 1.48417 1.50636 1.04144 1.13495 1.21737 0.99248 1.03031 0.79615 1.22233 1.01350 0.94994 0.91214 0.92968 0.92126 0.93554 0.82431 0.94682 0.92605 0.93435 0.96344 0.95672 0.93045 0.80129 0.91138 0.89703 0.89960 0.81610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.50 37.16 0.35 -1.42 16 2 C 0.16 2.49 2.85 -68.87 -0.20 2.30 16 3 H 0.07 1.08 7.04 -51.93 -0.37 0.72 16 4 N -0.67 -12.82 6.05 -100.95 -0.61 -13.43 16 5 C 0.09 1.86 2.41 -67.72 -0.16 1.70 16 6 H 0.03 0.62 7.71 -51.93 -0.40 0.22 16 7 C -0.14 -2.45 9.35 37.15 0.35 -2.10 16 8 C 0.02 0.54 4.58 -27.89 -0.13 0.42 16 9 C -0.52 -14.40 8.13 -34.44 -0.28 -14.68 16 10 H 0.06 1.51 6.65 -52.48 -0.35 1.16 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 13 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.25 -4.09 4.82 -105.05 -0.51 -4.60 16 18 C 0.07 1.27 10.34 -17.36 -0.18 1.09 16 19 N -0.30 -5.58 12.58 30.63 0.39 -5.19 16 20 N -0.38 -5.80 4.01 -68.16 -0.27 -6.07 16 21 C 0.11 1.05 11.47 59.84 0.69 1.74 16 22 C 0.05 0.69 11.40 -17.22 -0.20 0.50 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.35 7.38 5.60 -39.29 -0.22 7.16 16 27 H 0.03 0.55 7.40 -51.93 -0.38 0.17 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.18 3.30 7.43 -52.49 -0.39 2.91 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -32.15 306.71 -6.42 -38.57 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.89 Total: 3.90 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -0.36 Total: -13.39 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.24 Total: -50.92 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.15 -6.42 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.714 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds