Wall clock time and date at job start Sun Mar 29 2020 21:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47003 * 2 1 4 4 N 1.46903 * 109.46950 * 119.99513 * 2 1 3 5 5 C 1.46903 * 111.00030 * 206.53243 * 4 2 1 6 6 H 1.09003 * 109.46920 * 323.44559 * 5 4 2 7 7 C 1.52994 * 109.47316 * 83.44194 * 5 4 2 8 8 C 1.52998 * 109.46931 * 203.44605 * 5 4 2 9 9 C 1.50697 * 109.47484 * 65.00043 * 8 5 4 10 10 H 1.08006 * 119.99849 * 359.97438 * 9 8 5 11 11 C 1.37878 * 120.00096 * 179.97438 * 9 8 5 12 12 N 1.31512 * 119.99905 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99811 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47307 * 60.00165 * 13 11 9 15 15 H 1.48502 * 109.47126 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47333 * 299.99892 * 13 11 9 17 17 C 1.50699 * 109.47205 * 239.99661 * 2 1 3 18 18 C 1.39871 * 126.03634 * 280.15066 * 17 2 1 19 19 N 1.30839 * 108.19842 * 180.23217 * 18 17 2 20 20 N 1.40086 * 108.20714 * 359.78624 * 19 18 17 21 21 C 1.46496 * 126.03946 * 180.02562 * 20 19 18 22 22 C 1.34950 * 107.92357 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.47390 * 175.31477 * 1 2 3 24 24 H 1.09004 * 109.47545 * 295.30928 * 1 2 3 25 25 H 1.09003 * 109.47548 * 55.31219 * 1 2 3 26 26 H 1.00896 * 110.99818 * 82.57765 * 4 2 1 27 27 H 1.09003 * 109.47263 * 295.03014 * 7 5 4 28 28 H 1.08996 * 109.47208 * 55.02651 * 7 5 4 29 29 H 1.08999 * 109.47505 * 175.02978 * 7 5 4 30 30 H 1.09002 * 109.46974 * 184.99936 * 8 5 4 31 31 H 1.09004 * 109.46965 * 304.99290 * 8 5 4 32 32 H 0.96998 * 119.99733 * 180.02562 * 12 11 9 33 33 H 1.08000 * 125.90179 * 0.02562 * 18 17 2 34 34 H 1.08999 * 109.47426 * 269.97300 * 21 20 19 35 35 H 1.09002 * 109.47276 * 29.97573 * 21 20 19 36 36 H 1.09007 * 109.47258 * 149.96987 * 21 20 19 37 37 H 1.08000 * 126.12717 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.3519 -0.2055 1.5815 6 1 3.9319 0.0080 0.6836 7 6 3.2095 1.0714 2.4122 8 6 4.0679 -1.2750 2.4088 9 6 4.3177 -2.4893 1.5519 10 1 3.9974 -2.4975 0.5205 11 6 4.9551 -3.5897 2.0847 12 7 5.3447 -3.5798 3.3408 13 14 5.2642 -5.0950 1.0227 14 1 6.1104 -4.7171 -0.1375 15 1 5.9592 -6.1331 1.8257 16 1 3.9680 -5.6320 0.5360 17 6 2.0323 -0.7105 -1.2304 18 6 2.1187 -2.0958 -1.4030 19 7 2.6051 -2.3295 -2.5950 20 7 2.8394 -1.0985 -3.2212 21 6 3.3815 -0.9063 -4.5685 22 6 2.4764 -0.1210 -2.3645 23 1 -0.3634 -1.0242 -0.0839 24 1 -0.3634 0.4393 0.9290 25 1 -0.3634 0.5848 -0.8450 26 1 2.0254 -1.6921 1.0629 27 1 2.7797 1.8603 1.7950 28 1 2.5566 0.8799 3.2637 29 1 4.1907 1.3836 2.7697 30 1 5.0191 -0.8811 2.7668 31 1 3.4461 -1.5526 3.2600 32 1 5.7934 -4.3538 3.7154 33 1 1.8361 -2.8434 -0.6766 34 1 4.4685 -0.8433 -4.5173 35 1 3.0956 -1.7484 -5.1988 36 1 2.9837 0.0160 -4.9921 37 1 2.5348 0.9415 -2.5491 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278937557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:52 Heat of formation + Delta-G solvation = 43.498084 kcal Electronic energy + Delta-G solvation = -17326.343020 eV Core-core repulsion = 14718.038121 eV Total energy + Delta-G solvation = -2608.304899 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.13456 -38.46509 -35.39422 -34.14538 -33.27209 -30.50357 -29.27964 -28.95637 -27.31687 -25.06137 -23.40134 -22.02828 -21.01799 -20.56679 -18.47804 -17.85645 -16.68761 -16.37384 -16.27372 -15.67020 -15.21519 -14.88040 -14.54542 -14.00010 -13.77168 -13.60209 -13.46892 -13.35290 -13.29981 -13.04124 -12.67699 -12.57358 -12.41506 -12.21559 -12.08625 -11.99016 -11.30848 -11.18959 -10.91519 -10.55748 -10.30013 -9.29973 -9.05794 -8.17796 -6.25056 1.00203 1.35522 1.36354 1.44803 1.76797 1.88985 2.38907 3.14561 3.58047 3.67542 4.04492 4.28427 4.40053 4.43016 4.48109 4.49690 4.65970 4.67559 4.77406 4.82695 4.91217 5.01796 5.03551 5.22488 5.27324 5.32619 5.41215 5.50080 5.58603 5.65636 5.72966 5.90189 6.23085 6.27451 6.57435 6.74149 6.80466 6.90868 7.42701 8.94007 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.009796 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.087635 B = 2857.671057 C = 3958.064521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.160 3.840 3 H 0.085 0.915 4 N -0.674 5.674 5 C 0.101 3.899 6 H 0.018 0.982 7 C -0.128 4.128 8 C 0.027 3.973 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.009 3.991 12 N -0.930 5.930 13 Si 0.947 3.053 14 H -0.281 1.281 15 H -0.283 1.283 16 H -0.267 1.267 17 C -0.270 4.270 18 C 0.047 3.953 19 N -0.340 5.340 20 N -0.381 5.381 21 C 0.094 3.906 22 C 0.063 3.937 23 H 0.040 0.960 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.340 0.660 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.047 0.953 30 H -0.009 1.009 31 H -0.002 1.002 32 H 0.261 0.739 33 H 0.166 0.834 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 10.264 -13.740 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 H 0.103 0.897 4 N -0.306 5.306 5 C -0.009 4.009 6 H 0.036 0.964 7 C -0.185 4.185 8 C -0.010 4.010 9 C -0.560 4.560 10 H 0.076 0.924 11 C -0.189 4.189 12 N -0.570 5.570 13 Si 0.773 3.227 14 H -0.206 1.206 15 H -0.208 1.208 16 H -0.192 1.192 17 C -0.282 4.282 18 C -0.139 4.139 19 N -0.163 5.163 20 N -0.164 5.164 21 C -0.046 4.046 22 C -0.085 4.085 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.160 0.840 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.009 0.991 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.183 0.817 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.141 0.859 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.274 9.692 -14.165 18.642 hybrid contribution 0.962 -1.154 -0.205 1.516 sum -6.311 8.539 -14.371 17.868 Atomic orbital electron populations 1.21663 0.93130 1.01357 1.01868 1.20006 0.95545 0.96419 0.83129 0.89704 1.60872 1.24942 1.10454 1.34323 1.21331 0.88664 0.94958 0.95959 0.96428 1.21726 1.00704 0.96235 0.99879 1.19139 0.93803 0.93131 0.94948 1.21521 1.36825 1.00110 0.97509 0.92395 1.25731 0.95869 1.01407 0.95884 1.70071 1.41320 1.31177 1.14479 0.85783 0.78669 0.79689 0.78576 1.20632 1.20816 1.19200 1.21170 1.13948 0.93160 0.99963 1.23653 0.98759 0.97164 0.94283 1.77243 1.23553 1.05475 1.10002 1.48819 1.49516 1.03214 1.14861 1.22166 0.99770 1.05222 0.77408 1.22858 0.98911 0.96662 0.90043 0.94044 0.91893 0.91158 0.83983 0.91570 0.92967 0.93397 0.99055 0.98359 0.92976 0.81707 0.90506 0.89387 0.85930 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.50 71.98 0.68 -2.37 16 2 C 0.16 4.75 2.85 44.17 0.13 4.88 16 3 H 0.08 2.28 7.04 -2.39 -0.02 2.26 16 4 N -0.67 -25.45 6.05 -473.31 -2.86 -28.32 16 5 C 0.10 4.19 2.41 44.91 0.11 4.30 16 6 H 0.02 0.77 7.71 -2.39 -0.02 0.75 16 7 C -0.13 -4.41 9.35 71.98 0.67 -3.73 16 8 C 0.03 1.44 4.58 29.85 0.14 1.58 16 9 C -0.52 -29.57 8.13 25.60 0.21 -29.36 16 10 H 0.06 3.22 6.65 -2.91 -0.02 3.20 16 11 C 0.01 0.53 5.46 84.66 0.46 0.99 16 12 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 13 Si 0.95 46.46 29.54 68.60 2.03 48.49 16 14 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 17 C -0.27 -8.44 4.82 -20.14 -0.10 -8.54 16 18 C 0.05 1.72 10.34 85.24 0.88 2.60 16 19 N -0.34 -12.50 12.58 -57.02 -0.72 -13.22 16 20 N -0.38 -10.59 4.01 -369.57 -1.48 -12.07 16 21 C 0.09 1.56 11.47 127.77 1.47 3.03 16 22 C 0.06 1.60 11.40 83.54 0.95 2.55 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.34 14.49 5.60 -89.70 -0.50 13.98 16 27 H 0.07 1.87 7.40 -2.39 -0.02 1.86 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.17 6.33 7.43 -2.91 -0.02 6.31 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -70.91 306.71 3.38 -67.53 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.54 Total: 18.83 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 5.60 Total: -24.08 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.78 Total: -110.77 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -70.91 3.38 -67.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.025 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds