Wall clock time and date at job start Sun Mar 29 2020 21:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46823 * 2 1 4 4 C 1.53001 * 109.47328 * 240.00236 * 2 1 3 5 5 C 1.50697 * 109.47214 * 175.00239 * 4 2 1 6 6 H 1.08004 * 119.99992 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99938 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99683 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00089 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47329 * 90.00254 * 9 7 5 11 11 H 1.48501 * 109.47028 * 210.00307 * 9 7 5 12 12 H 1.48498 * 109.47157 * 329.99985 * 9 7 5 13 13 N 1.46896 * 109.47167 * 119.99743 * 2 1 3 14 14 C 1.46898 * 111.00313 * 265.05062 * 13 2 1 15 15 H 1.09003 * 109.47197 * 337.22693 * 14 13 2 16 16 C 1.53000 * 109.47379 * 97.22384 * 14 13 2 17 17 C 1.50699 * 109.47485 * 217.22455 * 14 13 2 18 18 C 1.39870 * 126.04125 * 320.02348 * 17 14 13 19 19 N 1.30833 * 108.20492 * 179.71550 * 18 17 14 20 20 N 1.40087 * 108.20462 * 0.24380 * 19 18 17 21 21 C 1.46499 * 126.03310 * 179.97438 * 20 19 18 22 22 C 1.34944 * 107.92321 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47430 * 305.45885 * 1 2 3 24 24 H 1.09005 * 109.47376 * 65.46237 * 1 2 3 25 25 H 1.09004 * 109.47211 * 185.46113 * 1 2 3 26 26 H 1.09005 * 109.46301 * 294.99533 * 4 2 1 27 27 H 1.08998 * 109.47321 * 54.99551 * 4 2 1 28 28 H 0.97003 * 119.99403 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00233 * 29.00309 * 13 2 1 30 30 H 1.08995 * 109.47190 * 54.10619 * 16 14 13 31 31 H 1.08994 * 109.47559 * 174.10839 * 16 14 13 32 32 H 1.09001 * 109.47020 * 294.10758 * 16 14 13 33 33 H 1.08004 * 125.89371 * 359.97438 * 18 17 14 34 34 H 1.09002 * 109.47092 * 90.03141 * 21 20 19 35 35 H 1.09005 * 109.46620 * 210.02891 * 21 20 19 36 36 H 1.09001 * 109.47840 * 330.02177 * 21 20 19 37 37 H 1.08006 * 126.12388 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2303 -1.1926 -2.3583 8 7 5.5411 -1.0993 -2.4139 9 14 3.3015 -2.1076 -3.6959 10 1 2.9398 -1.1624 -4.7827 11 1 4.1603 -3.1877 -4.2447 12 1 2.0659 -2.7002 -3.1238 13 7 2.0196 -0.6924 1.1994 14 6 2.3067 0.2624 2.2783 15 1 2.4841 1.2498 1.8519 16 6 1.1134 0.3264 3.2337 17 6 3.5312 -0.1861 3.0335 18 6 3.8499 -1.5042 3.3762 19 7 4.9890 -1.4952 4.0197 20 7 5.4292 -0.1685 4.1118 21 6 6.6631 0.2872 4.7567 22 6 4.5153 0.6155 3.5026 23 1 -0.3634 0.5962 0.8371 24 1 -0.3634 0.4268 -0.9349 25 1 -0.3634 -1.0230 0.0978 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2617 -2.1370 28 1 6.0254 -1.5061 -3.1493 29 1 1.3634 -1.3957 1.5042 30 1 0.8702 -0.6784 3.5791 31 1 1.3657 0.9534 4.0887 32 1 0.2540 0.7497 2.7137 33 1 3.2597 -2.3788 3.1455 34 1 7.4728 0.2954 4.0270 35 1 6.5175 1.2937 5.1492 36 1 6.9170 -0.3881 5.5738 37 1 4.5635 1.6898 3.4025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278937559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:54 Heat of formation + Delta-G solvation = 76.501529 kcal Electronic energy + Delta-G solvation = -17037.896916 eV Core-core repulsion = 14431.023154 eV Total energy + Delta-G solvation = -2606.873762 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75027 -37.22854 -33.73384 -32.50554 -31.72103 -29.30297 -27.84462 -27.53416 -26.24145 -22.67850 -22.27788 -20.74694 -19.68128 -19.31836 -16.56962 -16.42462 -15.13693 -14.79101 -14.69021 -13.99107 -13.81395 -13.61633 -12.97534 -12.76070 -12.63941 -12.48176 -12.31576 -12.08155 -11.86471 -11.67363 -11.59079 -11.10672 -10.94351 -10.56612 -10.25191 -10.08759 -9.58472 -9.47055 -8.96479 -8.92314 -8.32928 -7.89264 -7.49321 -5.81380 -3.74031 2.30955 2.90555 3.32609 3.41957 3.49690 3.53377 4.63078 4.70394 4.92842 5.21525 5.26569 5.34636 5.49563 5.53218 5.54920 5.56971 5.70518 5.72265 5.79382 5.93788 6.01577 6.11752 6.28329 6.37850 6.42091 6.55237 6.64106 6.92510 7.12817 7.25903 7.37729 7.45791 7.94284 8.03241 8.16359 8.22958 8.82945 9.31112 9.82248 11.33082 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.007711 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.970255 B = 3630.195531 C = 4637.522838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.100 3.900 3 H 0.066 0.934 4 C -0.004 4.004 5 C -0.482 4.482 6 H 0.075 0.925 7 C 0.058 3.942 8 N -0.911 5.911 9 Si 0.874 3.126 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.655 5.655 14 C 0.163 3.837 15 H 0.074 0.926 16 C -0.171 4.171 17 C -0.200 4.200 18 C 0.077 3.923 19 N -0.309 5.309 20 N -0.384 5.384 21 C 0.107 3.893 22 C 0.046 3.954 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.016 0.984 27 H 0.009 0.991 28 H 0.257 0.743 29 H 0.330 0.670 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.178 0.822 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 4.640 13.499 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.009 4.009 3 H 0.084 0.916 4 C -0.042 4.042 5 C -0.520 4.520 6 H 0.093 0.907 7 C -0.141 4.141 8 N -0.552 5.552 9 Si 0.703 3.297 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.285 5.285 14 C 0.051 3.949 15 H 0.092 0.908 16 C -0.230 4.230 17 C -0.212 4.212 18 C -0.109 4.109 19 N -0.131 5.131 20 N -0.167 5.167 21 C -0.035 4.035 22 C -0.099 4.099 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.195 0.805 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.122 3.910 13.819 14.942 hybrid contribution -1.733 0.221 -1.051 2.039 sum -5.856 4.130 12.769 14.642 Atomic orbital electron populations 1.22648 0.99235 1.01062 1.01047 1.21643 0.89792 0.97687 0.91812 0.91586 1.19618 0.97694 0.95519 0.91343 1.21031 0.89599 1.33299 1.08087 0.90713 1.25019 0.94660 0.96423 0.97959 1.69929 1.06452 1.46576 1.32290 0.86872 0.80235 0.79994 0.82620 1.20799 1.21798 1.19260 1.60361 1.50113 1.14064 1.03919 1.19761 0.89935 0.95444 0.89776 0.90793 1.22543 0.98588 1.01810 1.00074 1.19987 1.00344 0.92855 1.08061 1.23560 0.93529 0.97937 0.95867 1.77274 1.14358 0.96810 1.24643 1.48275 1.18300 1.04817 1.45285 1.21722 0.83728 1.00055 0.98009 1.22134 0.90946 0.97602 0.99244 0.93830 0.92617 0.93008 0.96553 0.97310 0.93278 0.85165 0.92593 0.92790 0.92856 0.80536 0.91025 0.90059 0.89862 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.22 37.15 0.34 -2.41 16 2 C 0.10 1.91 2.61 -67.72 -0.18 1.73 16 3 H 0.07 1.31 7.14 -51.93 -0.37 0.94 16 4 C 0.00 -0.09 3.72 -27.88 -0.10 -0.20 16 5 C -0.48 -13.99 9.39 -34.44 -0.32 -14.31 16 6 H 0.07 2.39 7.99 -52.48 -0.42 1.97 16 7 C 0.06 1.75 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -29.30 13.96 55.43 0.77 -28.53 16 9 Si 0.87 22.55 27.47 -169.99 -4.67 17.88 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 13 N -0.66 -11.80 5.58 -100.96 -0.56 -12.36 16 14 C 0.16 2.53 3.12 -68.87 -0.22 2.31 16 15 H 0.07 1.19 7.11 -51.93 -0.37 0.82 16 16 C -0.17 -2.10 9.19 37.16 0.34 -1.76 16 17 C -0.20 -3.36 5.09 -105.05 -0.53 -3.89 16 18 C 0.08 1.37 11.66 -17.37 -0.20 1.16 16 19 N -0.31 -5.65 12.58 30.62 0.39 -5.27 16 20 N -0.38 -6.01 4.01 -68.16 -0.27 -6.29 16 21 C 0.11 1.13 11.47 59.85 0.69 1.82 16 22 C 0.05 0.71 11.40 -17.23 -0.20 0.52 16 23 H 0.04 0.57 6.56 -51.93 -0.34 0.23 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.75 8.01 -51.93 -0.42 0.34 16 26 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 27 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 28 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 29 H 0.33 5.30 7.72 -39.29 -0.30 5.00 16 30 H 0.05 0.66 8.00 -51.93 -0.42 0.25 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.62 6.56 -51.93 -0.34 0.27 16 33 H 0.18 2.84 8.06 -52.48 -0.42 2.41 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.17 1.99 8.06 -52.48 -0.42 1.56 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -34.75 305.70 -6.09 -40.84 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.87 Total: 2.48 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.48 Total: -13.36 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.32 Total: -52.44 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.75 -6.09 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.341 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds