Wall clock time and date at job start Sun Mar 29 2020 21:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46823 * 2 1 4 4 C 1.53001 * 109.47328 * 240.00236 * 2 1 3 5 5 C 1.50697 * 109.47214 * 175.00239 * 4 2 1 6 6 H 1.08004 * 119.99992 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99938 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99683 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00089 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47329 * 90.00254 * 9 7 5 11 11 H 1.48501 * 109.47028 * 210.00307 * 9 7 5 12 12 H 1.48498 * 109.47157 * 329.99985 * 9 7 5 13 13 N 1.46896 * 109.47167 * 119.99743 * 2 1 3 14 14 C 1.46898 * 111.00313 * 265.05062 * 13 2 1 15 15 H 1.09003 * 109.47197 * 337.22693 * 14 13 2 16 16 C 1.53000 * 109.47379 * 97.22384 * 14 13 2 17 17 C 1.50699 * 109.47485 * 217.22455 * 14 13 2 18 18 C 1.39870 * 126.04125 * 320.02348 * 17 14 13 19 19 N 1.30833 * 108.20492 * 179.71550 * 18 17 14 20 20 N 1.40087 * 108.20462 * 0.24380 * 19 18 17 21 21 C 1.46499 * 126.03310 * 179.97438 * 20 19 18 22 22 C 1.34944 * 107.92321 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47430 * 305.45885 * 1 2 3 24 24 H 1.09005 * 109.47376 * 65.46237 * 1 2 3 25 25 H 1.09004 * 109.47211 * 185.46113 * 1 2 3 26 26 H 1.09005 * 109.46301 * 294.99533 * 4 2 1 27 27 H 1.08998 * 109.47321 * 54.99551 * 4 2 1 28 28 H 0.97003 * 119.99403 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00233 * 29.00309 * 13 2 1 30 30 H 1.08995 * 109.47190 * 54.10619 * 16 14 13 31 31 H 1.08994 * 109.47559 * 174.10839 * 16 14 13 32 32 H 1.09001 * 109.47020 * 294.10758 * 16 14 13 33 33 H 1.08004 * 125.89371 * 359.97438 * 18 17 14 34 34 H 1.09002 * 109.47092 * 90.03141 * 21 20 19 35 35 H 1.09005 * 109.46620 * 210.02891 * 21 20 19 36 36 H 1.09001 * 109.47840 * 330.02177 * 21 20 19 37 37 H 1.08006 * 126.12388 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2303 -1.1926 -2.3583 8 7 5.5411 -1.0993 -2.4139 9 14 3.3015 -2.1076 -3.6959 10 1 2.9398 -1.1624 -4.7827 11 1 4.1603 -3.1877 -4.2447 12 1 2.0659 -2.7002 -3.1238 13 7 2.0196 -0.6924 1.1994 14 6 2.3067 0.2624 2.2783 15 1 2.4841 1.2498 1.8519 16 6 1.1134 0.3264 3.2337 17 6 3.5312 -0.1861 3.0335 18 6 3.8499 -1.5042 3.3762 19 7 4.9890 -1.4952 4.0197 20 7 5.4292 -0.1685 4.1118 21 6 6.6631 0.2872 4.7567 22 6 4.5153 0.6155 3.5026 23 1 -0.3634 0.5962 0.8371 24 1 -0.3634 0.4268 -0.9349 25 1 -0.3634 -1.0230 0.0978 26 1 1.7517 -1.7715 -1.2055 27 1 1.6054 -0.2617 -2.1370 28 1 6.0254 -1.5061 -3.1493 29 1 1.3634 -1.3957 1.5042 30 1 0.8702 -0.6784 3.5791 31 1 1.3657 0.9534 4.0887 32 1 0.2540 0.7497 2.7137 33 1 3.2597 -2.3788 3.1455 34 1 7.4728 0.2954 4.0270 35 1 6.5175 1.2937 5.1492 36 1 6.9170 -0.3881 5.5738 37 1 4.5635 1.6898 3.4025 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278937559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:54 Heat of formation + Delta-G solvation = 51.808103 kcal Electronic energy + Delta-G solvation = -17038.967704 eV Core-core repulsion = 14431.023154 eV Total energy + Delta-G solvation = -2607.944550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97968 -38.62003 -35.31463 -34.15916 -33.25597 -30.70464 -29.54234 -28.75269 -27.29731 -24.56291 -23.54094 -22.03969 -21.16056 -20.65312 -18.72124 -17.71450 -16.46186 -16.23494 -16.09199 -15.57680 -15.13665 -14.98305 -14.56025 -14.19610 -13.74845 -13.66375 -13.58113 -13.51383 -13.30620 -13.20326 -12.76665 -12.55780 -12.28724 -12.18413 -11.98988 -11.57007 -11.49181 -11.18302 -10.96005 -10.63370 -10.21615 -9.12744 -8.84192 -8.13305 -6.10557 1.07651 1.37957 1.41122 1.52250 1.83381 2.02949 2.45776 3.21229 3.51335 3.86290 4.11789 4.22440 4.36360 4.44317 4.45713 4.51094 4.53702 4.57213 4.66905 4.68729 4.91502 4.95700 5.07120 5.20570 5.25430 5.27261 5.29814 5.37110 5.49780 5.64130 5.82753 5.86092 6.27636 6.47115 6.63239 6.88486 6.92252 7.00283 7.49508 9.04642 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.007711 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.970255 B = 3630.195531 C = 4637.522838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 H 0.053 0.947 4 C -0.004 4.004 5 C -0.478 4.478 6 H 0.029 0.971 7 C -0.011 4.011 8 N -0.964 5.964 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.248 1.248 13 N -0.679 5.679 14 C 0.168 3.832 15 H 0.064 0.936 16 C -0.157 4.157 17 C -0.224 4.224 18 C 0.059 3.941 19 N -0.345 5.345 20 N -0.386 5.386 21 C 0.096 3.904 22 C 0.045 3.955 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.257 0.743 29 H 0.340 0.660 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.181 0.819 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 5.149 13.820 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 H 0.071 0.929 4 C -0.042 4.042 5 C -0.517 4.517 6 H 0.048 0.952 7 C -0.205 4.205 8 N -0.608 5.608 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.171 1.171 13 N -0.310 5.310 14 C 0.057 3.943 15 H 0.082 0.918 16 C -0.216 4.216 17 C -0.236 4.236 18 C -0.126 4.126 19 N -0.168 5.168 20 N -0.169 5.169 21 C -0.044 4.044 22 C -0.102 4.102 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.160 0.840 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.198 0.802 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.283 4.423 14.167 16.116 hybrid contribution -0.936 0.134 -1.063 1.423 sum -7.219 4.557 13.104 15.639 Atomic orbital electron populations 1.22483 0.95541 1.02275 1.02436 1.21400 0.92617 0.96105 0.90284 0.92910 1.19616 0.94110 0.96102 0.94340 1.21313 0.92362 1.31671 1.06334 0.95240 1.25999 0.95512 0.97874 1.01067 1.70114 1.08583 1.48507 1.33567 0.85704 0.79224 0.78553 0.79316 1.19438 1.22064 1.17125 1.60172 1.50934 1.15295 1.04599 1.19719 0.90930 0.94106 0.89586 0.91756 1.22382 0.97219 1.02443 0.99581 1.20294 1.01542 0.92800 1.08944 1.23749 0.93793 0.98731 0.96322 1.77176 1.14987 0.98804 1.25785 1.48687 1.19314 1.04007 1.44900 1.22107 0.81964 1.02242 0.98075 1.22696 0.90294 0.99026 0.98193 0.91278 0.92188 0.92102 0.96722 0.96597 0.93394 0.84028 0.92175 0.91740 0.91637 0.80221 0.91112 0.86369 0.88923 0.78577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.58 9.22 71.98 0.66 -3.91 16 2 C 0.11 3.90 2.61 44.92 0.12 4.02 16 3 H 0.05 2.06 7.14 -2.38 -0.02 2.05 16 4 C 0.00 -0.18 3.72 29.85 0.11 -0.06 16 5 C -0.48 -28.29 9.39 25.60 0.24 -28.05 16 6 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 7 C -0.01 -0.66 5.47 84.65 0.46 -0.20 16 8 N -0.96 -63.82 13.96 21.45 0.30 -63.52 16 9 Si 0.95 46.53 27.47 68.60 1.88 48.41 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 12 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 13 N -0.68 -23.98 5.58 -473.32 -2.64 -26.62 16 14 C 0.17 5.07 3.12 44.17 0.14 5.21 16 15 H 0.06 2.04 7.11 -2.39 -0.02 2.02 16 16 C -0.16 -3.48 9.19 71.98 0.66 -2.82 16 17 C -0.22 -7.46 5.09 -20.14 -0.10 -7.57 16 18 C 0.06 2.13 11.66 85.24 0.99 3.12 16 19 N -0.34 -12.81 12.58 -57.02 -0.72 -13.52 16 20 N -0.39 -11.92 4.01 -369.56 -1.48 -13.40 16 21 C 0.10 1.92 11.47 127.77 1.47 3.39 16 22 C 0.04 1.33 11.40 83.54 0.95 2.29 16 23 H 0.07 1.54 6.56 -2.39 -0.02 1.52 16 24 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.06 1.55 8.01 -2.38 -0.02 1.54 16 26 H 0.01 0.69 7.20 -2.38 -0.02 0.67 16 27 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 28 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 29 H 0.34 10.47 7.72 -89.69 -0.69 9.77 16 30 H 0.06 1.29 8.00 -2.39 -0.02 1.27 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.29 6.56 -2.39 -0.02 1.27 16 33 H 0.18 5.98 8.06 -2.91 -0.02 5.95 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -77.14 305.70 3.34 -73.80 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.30 Total: 19.44 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 5.70 Total: -24.59 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.54 Total: -117.06 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.88 Total: 48.41 kcal Total: -77.14 3.34 -73.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278937559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.607 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds