Wall clock time and date at job start Sun Mar 29 2020 21:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47356 * 269.97605 * 6 5 4 8 8 N 1.46905 * 109.47223 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99609 * 66.04742 * 8 7 6 10 10 C 1.46903 * 110.99992 * 190.00016 * 8 7 6 11 11 C 1.50700 * 109.47111 * 170.00549 * 10 8 7 12 12 H 1.08002 * 119.99571 * 359.97438 * 11 10 8 13 13 C 1.37875 * 120.00180 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99888 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99972 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46956 * 89.99827 * 15 13 11 17 17 H 1.48501 * 109.47248 * 209.99316 * 15 13 11 18 18 H 1.48495 * 109.47534 * 329.99689 * 15 13 11 19 19 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 20 20 N 1.30844 * 108.19764 * 359.97438 * 19 5 4 21 21 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 25 25 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 26 26 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 28 28 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 29 29 H 1.09002 * 109.47219 * 299.99882 * 7 6 5 30 30 H 1.09000 * 109.47222 * 60.00230 * 7 6 5 31 31 H 1.08999 * 109.47501 * 60.00501 * 9 8 7 32 32 H 1.09009 * 109.46812 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47508 * 299.99844 * 9 8 7 34 34 H 1.09000 * 109.47218 * 289.99999 * 10 8 7 35 35 H 1.08996 * 109.47424 * 50.00400 * 10 8 7 36 36 H 0.96999 * 120.00091 * 180.02562 * 14 13 11 37 37 H 1.07995 * 125.89923 * 180.25722 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 6 3.1405 4.9283 2.3357 8 7 4.0020 5.8891 3.0376 9 6 4.4352 6.9646 2.1355 10 6 3.3256 6.4356 4.2216 11 6 4.3129 7.2200 5.0469 12 1 5.3402 7.3038 4.7243 13 6 3.9050 7.8298 6.2143 14 7 2.6541 7.7273 6.6073 15 14 5.1289 8.8015 7.2375 16 1 5.1330 10.2179 6.7913 17 1 4.7405 8.7347 8.6693 18 1 6.4864 8.2245 7.0655 19 6 2.3129 3.4723 -0.6000 20 7 1.6811 2.3745 -0.9282 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3184 1.4127 1.7364 27 1 4.7828 3.6692 1.7373 28 1 4.3482 4.9239 0.5519 29 1 2.3133 5.4587 1.8640 30 1 2.7480 4.2040 3.0495 31 1 3.5614 7.4926 1.7538 32 1 5.0712 7.6620 2.6808 33 1 4.9940 6.5374 1.3029 34 1 2.5140 7.0912 3.9062 35 1 2.9213 5.6183 4.8187 36 1 2.3670 8.1566 7.4284 37 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284882258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:24 Heat of formation + Delta-G solvation = 72.345525 kcal Electronic energy + Delta-G solvation = -16287.291428 eV Core-core repulsion = 13680.237448 eV Total energy + Delta-G solvation = -2607.053980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12766 -36.78284 -34.68098 -32.81957 -31.61866 -30.18693 -27.88060 -26.78992 -25.09267 -23.84122 -22.23805 -20.67430 -20.14901 -19.60583 -16.93713 -16.26900 -15.54003 -14.85582 -14.64301 -14.35326 -14.12463 -14.03958 -13.24379 -13.09508 -12.87389 -12.42970 -12.31645 -11.98526 -11.87962 -11.58680 -11.37224 -11.13993 -10.81556 -10.66732 -10.50643 -10.37778 -10.17339 -9.74387 -9.35446 -9.17034 -8.39534 -8.18747 -7.14217 -5.98225 -3.99304 1.95779 2.51861 2.92158 3.34543 3.40492 3.45181 4.34924 4.46655 4.72453 4.86742 4.95213 5.01817 5.16517 5.32475 5.37391 5.46803 5.51173 5.69533 5.86960 5.89540 5.96382 6.08621 6.19352 6.27108 6.42719 6.62532 6.65279 6.80171 6.85697 7.08237 7.37642 7.42816 7.77082 7.86027 8.16243 8.28692 8.62991 9.08863 9.64686 11.12756 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044856 B = 0.004067 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.071529 B = 6883.051569 C = 7199.163809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.133 3.867 3 N -0.378 5.378 4 C 0.052 3.948 5 C -0.223 4.223 6 C -0.037 4.037 7 C 0.063 3.937 8 N -0.543 5.543 9 C 0.036 3.964 10 C 0.192 3.808 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.050 3.950 20 N -0.302 5.302 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.172 0.828 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.047 0.953 34 H -0.010 1.010 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.238 -13.577 -12.811 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.162 5.162 4 C -0.093 4.093 5 C -0.235 4.235 6 C -0.076 4.076 7 C -0.066 4.066 8 N -0.267 5.267 9 C -0.113 4.113 10 C 0.067 3.933 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.136 4.136 20 N -0.123 5.123 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.189 0.811 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.007 0.993 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.805 -14.489 -13.314 19.760 hybrid contribution 0.292 1.351 1.025 1.721 sum -1.513 -13.138 -12.289 18.053 Atomic orbital electron populations 1.22057 0.93963 1.02630 1.03686 1.21614 0.95979 0.77823 1.03452 1.48600 1.36051 1.09983 1.21525 1.22382 0.95833 0.94955 0.96166 1.20229 1.07641 0.95050 1.00541 1.19926 0.96132 0.95279 0.96297 1.22026 0.93845 0.95517 0.95206 1.62110 1.41018 1.15882 1.07725 1.22244 0.98982 0.94367 0.95682 1.19720 0.93129 0.94191 0.86265 1.21194 0.96340 1.30669 1.06199 0.91836 1.25000 0.95299 0.96788 0.97648 1.69966 1.15706 1.44730 1.23595 0.86506 0.81477 0.80177 0.79303 1.20779 1.21309 1.19754 1.23802 0.95873 0.97252 0.96643 1.77236 1.23943 0.97118 1.14025 0.90906 0.91962 0.91190 0.90149 0.88781 0.81068 0.90922 0.91487 0.96193 0.91843 0.97252 0.90955 0.93428 0.99268 0.95369 0.92997 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.10 37.16 0.38 -0.93 16 2 C 0.13 1.08 7.23 -4.04 -0.03 1.05 16 3 N -0.38 -4.62 3.68 -61.37 -0.23 -4.85 16 4 C 0.05 0.65 11.36 -17.22 -0.20 0.45 16 5 C -0.22 -3.10 5.35 -105.05 -0.56 -3.67 16 6 C -0.04 -0.56 5.62 -27.89 -0.16 -0.71 16 7 C 0.06 1.17 4.94 -3.83 -0.02 1.15 16 8 N -0.54 -11.99 4.75 -244.37 -1.16 -13.15 16 9 C 0.04 0.71 9.14 60.06 0.55 1.26 16 10 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 11 C -0.51 -14.43 8.46 -34.44 -0.29 -14.72 16 12 H 0.06 1.79 7.12 -52.49 -0.37 1.41 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 15 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 C 0.05 0.69 11.96 -17.36 -0.21 0.49 16 20 N -0.30 -4.31 12.42 30.62 0.38 -3.93 16 21 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 26 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 29 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 1.53 6.76 -51.92 -0.35 1.18 16 33 H 0.05 0.79 6.47 -51.93 -0.34 0.45 16 34 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 35 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 309.70 15.07 4.67 4.67 Total: -1.00 -32.55 309.70 -7.29 -39.83 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.00 Total: -3.87 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.66 Total: -9.07 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.27 Total: -48.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.55 -7.29 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284882258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.180 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds