Wall clock time and date at job start Sun Mar 29 2020 21:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47356 * 269.97605 * 6 5 4 8 8 N 1.46905 * 109.47223 * 179.97438 * 7 6 5 9 9 C 1.46899 * 110.99609 * 66.04742 * 8 7 6 10 10 C 1.46903 * 110.99992 * 190.00016 * 8 7 6 11 11 C 1.50700 * 109.47111 * 170.00549 * 10 8 7 12 12 H 1.08002 * 119.99571 * 359.97438 * 11 10 8 13 13 C 1.37875 * 120.00180 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99888 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99972 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46956 * 89.99827 * 15 13 11 17 17 H 1.48501 * 109.47248 * 209.99316 * 15 13 11 18 18 H 1.48495 * 109.47534 * 329.99689 * 15 13 11 19 19 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 20 20 N 1.30844 * 108.19764 * 359.97438 * 19 5 4 21 21 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 25 25 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 26 26 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 28 28 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 29 29 H 1.09002 * 109.47219 * 299.99882 * 7 6 5 30 30 H 1.09000 * 109.47222 * 60.00230 * 7 6 5 31 31 H 1.08999 * 109.47501 * 60.00501 * 9 8 7 32 32 H 1.09009 * 109.46812 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47508 * 299.99844 * 9 8 7 34 34 H 1.09000 * 109.47218 * 289.99999 * 10 8 7 35 35 H 1.08996 * 109.47424 * 50.00400 * 10 8 7 36 36 H 0.96999 * 120.00091 * 180.02562 * 14 13 11 37 37 H 1.07995 * 125.89923 * 180.25722 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 6 3.1405 4.9283 2.3357 8 7 4.0020 5.8891 3.0376 9 6 4.4352 6.9646 2.1355 10 6 3.3256 6.4356 4.2216 11 6 4.3129 7.2200 5.0469 12 1 5.3402 7.3038 4.7243 13 6 3.9050 7.8298 6.2143 14 7 2.6541 7.7273 6.6073 15 14 5.1289 8.8015 7.2375 16 1 5.1330 10.2179 6.7913 17 1 4.7405 8.7347 8.6693 18 1 6.4864 8.2245 7.0655 19 6 2.3129 3.4723 -0.6000 20 7 1.6811 2.3745 -0.9282 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.3184 1.4127 1.7364 27 1 4.7828 3.6692 1.7373 28 1 4.3482 4.9239 0.5519 29 1 2.3133 5.4587 1.8640 30 1 2.7480 4.2040 3.0495 31 1 3.5614 7.4926 1.7538 32 1 5.0712 7.6620 2.6808 33 1 4.9940 6.5374 1.3029 34 1 2.5140 7.0912 3.9062 35 1 2.9213 5.6183 4.8187 36 1 2.3670 8.1566 7.4284 37 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284882258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:23 Heat of formation + Delta-G solvation = 50.958222 kcal Electronic energy + Delta-G solvation = -16288.218851 eV Core-core repulsion = 13680.237448 eV Total energy + Delta-G solvation = -2607.981403 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.10227 -38.47372 -35.60502 -34.75308 -33.03480 -31.08753 -29.50675 -28.41562 -26.73504 -24.74903 -23.89154 -21.79648 -21.57762 -20.75103 -18.46698 -17.85227 -16.72663 -16.39166 -16.18184 -15.84661 -15.30776 -15.10295 -14.76245 -14.42603 -13.97309 -13.83166 -13.55399 -13.20186 -13.06087 -12.96390 -12.76760 -12.59962 -12.54746 -12.25393 -12.18228 -11.97737 -11.66436 -11.32130 -11.19422 -10.60139 -10.31931 -9.24641 -8.96290 -8.18310 -6.28834 0.99196 1.43167 1.44838 1.56758 1.69749 1.86814 2.42852 3.14010 3.42340 3.65144 4.01331 4.10470 4.19171 4.23969 4.38486 4.47215 4.55436 4.63547 4.69857 4.76700 4.81141 4.88407 4.92226 4.99955 5.12571 5.21437 5.21825 5.28782 5.38785 5.45143 5.68107 5.77800 6.07956 6.20345 6.38126 6.68762 6.78113 6.88325 7.41130 8.93050 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044856 B = 0.004067 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.071529 B = 6883.051569 C = 7199.163809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 N -0.377 5.377 4 C 0.058 3.942 5 C -0.247 4.247 6 C -0.018 4.018 7 C 0.067 3.933 8 N -0.548 5.548 9 C 0.038 3.962 10 C 0.206 3.794 11 C -0.523 4.523 12 H 0.066 0.934 13 C -0.002 4.002 14 N -0.938 5.938 15 Si 0.972 3.028 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.041 3.959 20 N -0.329 5.329 21 H 0.101 0.899 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.199 0.801 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.011 0.989 30 H 0.052 0.948 31 H 0.006 0.994 32 H 0.056 0.944 33 H 0.086 0.914 34 H -0.043 1.043 35 H 0.001 0.999 36 H 0.264 0.736 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -14.503 -13.102 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.002 3.998 3 N -0.160 5.160 4 C -0.089 4.089 5 C -0.259 4.259 6 C -0.057 4.057 7 C -0.062 4.062 8 N -0.272 5.272 9 C -0.110 4.110 10 C 0.079 3.921 11 C -0.561 4.561 12 H 0.084 0.916 13 C -0.199 4.199 14 N -0.578 5.578 15 Si 0.796 3.204 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.186 1.186 19 C -0.144 4.144 20 N -0.151 5.151 21 H 0.119 0.881 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.141 0.859 26 H 0.216 0.784 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.104 0.896 34 H -0.025 1.025 35 H 0.019 0.981 36 H 0.073 0.927 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.424 -15.437 -13.642 20.605 hybrid contribution -0.207 1.542 1.073 1.890 sum -0.631 -13.895 -12.569 18.747 Atomic orbital electron populations 1.22019 0.93931 1.03948 1.01931 1.22029 0.96047 0.76123 1.05584 1.48971 1.35421 1.10904 1.20714 1.22831 0.94995 0.94731 0.96315 1.20189 1.08777 0.95674 1.01212 1.19689 0.95637 0.95334 0.95067 1.22078 0.93887 0.94554 0.95654 1.62062 1.40921 1.16660 1.07554 1.22270 0.98913 0.93767 0.96037 1.19393 0.92231 0.92529 0.87924 1.21505 0.96650 1.31111 1.06820 0.91572 1.25968 0.97263 0.97754 0.98926 1.70103 1.17821 1.45692 1.24223 0.85340 0.79052 0.78656 0.77311 1.19835 1.20803 1.18640 1.24089 0.95686 0.97818 0.96852 1.77189 1.24777 0.97842 1.15307 0.88066 0.93444 0.93114 0.88805 0.85860 0.78427 0.90481 0.90642 0.97045 0.92945 0.97532 0.92517 0.89564 1.02514 0.98080 0.92730 0.79125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.10 71.98 0.73 -1.57 16 2 C 0.12 1.70 7.23 86.38 0.62 2.33 16 3 N -0.38 -8.60 3.68 -348.07 -1.28 -9.88 16 4 C 0.06 1.33 11.36 83.54 0.95 2.28 16 5 C -0.25 -6.55 5.35 -20.14 -0.11 -6.66 16 6 C -0.02 -0.52 5.62 29.85 0.17 -0.35 16 7 C 0.07 2.47 4.94 86.30 0.43 2.90 16 8 N -0.55 -24.27 4.75 -927.04 -4.41 -28.67 16 9 C 0.04 1.49 9.14 127.69 1.17 2.66 16 10 C 0.21 11.37 4.72 85.56 0.40 11.78 16 11 C -0.52 -30.18 8.46 25.60 0.22 -29.97 16 12 H 0.07 3.71 7.12 -2.91 -0.02 3.69 16 13 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 14 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 15 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 19 C 0.04 1.09 11.96 85.23 1.02 2.11 16 20 N -0.33 -9.15 12.42 -57.02 -0.71 -9.86 16 21 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 26 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.00 6.55 -2.38 -0.02 1.98 16 29 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 30 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 31 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.06 2.37 6.76 -2.38 -0.02 2.35 16 33 H 0.09 2.67 6.47 -2.39 -0.02 2.66 16 34 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 35 H 0.00 0.06 7.93 -2.39 -0.02 0.05 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.19 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -70.86 309.70 2.99 -67.86 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 1.02 Total: 5.30 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 6.06 Total: -14.13 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -6.11 Total: -105.68 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.86 2.99 -67.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284882258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.821 kcal (2) G-P(sol) polarization free energy of solvation -70.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds