Wall clock time and date at job start Sun Mar 29 2020 21:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47310 * 2 1 4 4 C 1.36933 * 119.99812 * 275.31461 * 3 2 1 5 5 H 1.07999 * 120.00808 * 37.57016 * 4 3 2 6 6 C 1.38820 * 119.99559 * 217.57365 * 4 3 2 7 7 N 1.31614 * 120.00209 * 21.43372 * 6 4 3 8 8 Si 1.86804 * 119.99745 * 201.43407 * 6 4 3 9 9 H 1.48493 * 109.47342 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47202 * 120.00005 * 8 6 4 11 11 H 1.48506 * 109.46911 * 239.99925 * 8 6 4 12 12 C 1.46499 * 119.99952 * 95.30815 * 3 2 1 13 13 C 1.53001 * 109.47135 * 270.00324 * 12 3 2 14 14 C 1.50707 * 109.46727 * 179.97438 * 13 12 3 15 15 C 1.39865 * 126.03842 * 90.02588 * 14 13 12 16 16 N 1.30834 * 108.20415 * 179.97438 * 15 14 13 17 17 N 1.40087 * 108.20599 * 0.02562 * 16 15 14 18 18 C 1.46496 * 126.04117 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47129 * 304.97958 * 18 17 16 20 20 C 1.34952 * 107.92375 * 359.97438 * 17 16 15 21 21 H 1.08997 * 109.47344 * 299.99929 * 1 2 3 22 22 H 1.08996 * 109.47374 * 59.99891 * 1 2 3 23 23 H 1.09001 * 109.46916 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47124 * 240.00344 * 2 1 3 25 25 H 1.08996 * 109.47374 * 120.00109 * 2 1 3 26 26 H 0.96998 * 120.00130 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47257 * 149.99795 * 12 3 2 28 28 H 1.09004 * 109.47023 * 30.00220 * 12 3 2 29 29 H 1.09000 * 109.46898 * 60.00347 * 13 12 3 30 30 H 1.08997 * 109.47354 * 299.99576 * 13 12 3 31 31 H 1.08005 * 125.89671 * 0.22107 * 15 14 13 32 32 H 1.09002 * 109.46533 * 64.97748 * 18 17 16 33 33 H 1.08995 * 109.47071 * 184.97519 * 18 17 16 34 34 H 1.09002 * 109.47242 * 299.99356 * 19 18 17 35 35 H 1.08995 * 109.47502 * 59.99826 * 19 18 17 36 36 H 1.09006 * 109.47177 * 179.97438 * 19 18 17 37 37 H 1.07998 * 126.12740 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1430 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9290 -1.3728 7 7 4.3027 2.7980 -0.6492 8 14 3.0991 4.2797 -2.6583 9 1 1.7775 4.2136 -3.3319 10 1 3.2548 5.6024 -2.0014 11 1 4.1765 4.0966 -3.6639 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7382 1.8366 14 6 1.5075 3.4078 3.1364 15 6 1.9837 4.7147 3.2836 16 7 2.1867 4.9347 4.5572 17 7 1.8461 3.7729 5.2618 18 6 1.9253 3.5908 6.7133 19 6 3.3436 3.9089 7.1906 20 6 1.4322 2.8510 4.3674 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 5.0491 3.4027 -0.7836 27 1 3.1617 2.7640 1.0860 28 1 2.7255 1.2833 1.9721 29 1 0.3541 2.0067 2.0139 30 1 0.7903 3.4876 1.1278 31 1 2.1509 5.4215 2.4842 32 1 1.2183 4.2609 7.2025 33 1 1.6805 2.5586 6.9638 34 1 4.0505 3.2388 6.7014 35 1 3.5884 4.9411 6.9401 36 1 3.4024 3.7738 8.2707 37 1 1.1002 1.8485 4.5936 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285056100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:26 Heat of formation + Delta-G solvation = 86.660837 kcal Electronic energy + Delta-G solvation = -16929.682149 eV Core-core repulsion = 14323.248927 eV Total energy + Delta-G solvation = -2606.433222 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76195 -36.12366 -34.39809 -31.82682 -31.68544 -29.90906 -28.77135 -26.77196 -24.26449 -23.55454 -21.98850 -20.35245 -20.10482 -19.35316 -16.62000 -16.48894 -15.26728 -14.84943 -14.08311 -13.95715 -13.76521 -13.73673 -12.92085 -12.77988 -12.42857 -12.28244 -12.10243 -12.03665 -11.57874 -11.46761 -11.08776 -11.00569 -10.69459 -10.59357 -10.42057 -10.17682 -9.94605 -9.56769 -9.32895 -9.00593 -8.37626 -7.84954 -6.43937 -5.67662 -3.27073 2.28086 2.82481 3.32738 3.41363 3.49797 3.52484 4.55528 4.58298 4.92262 5.08508 5.18819 5.37014 5.42152 5.49057 5.63023 5.72264 5.96588 5.98932 6.13186 6.14404 6.33192 6.44598 6.54617 6.63723 6.66118 6.80967 6.90135 6.99777 7.17153 7.22459 7.30391 7.49026 7.86491 7.93975 8.12334 8.62969 9.30696 9.93379 10.52317 11.30585 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.006748 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.246590 B = 4148.184031 C = 4875.182652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.587 5.587 4 C -0.257 4.257 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.291 1.291 12 C 0.156 3.844 13 C -0.062 4.062 14 C -0.205 4.205 15 C 0.054 3.946 16 N -0.306 5.306 17 N -0.383 5.383 18 C 0.135 3.865 19 C -0.165 4.165 20 C 0.036 3.964 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.033 0.967 24 H 0.041 0.959 25 H 0.031 0.969 26 H 0.253 0.747 27 H 0.093 0.907 28 H 0.018 0.982 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.179 0.821 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 -0.602 12.662 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.307 5.307 4 C -0.387 4.387 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.218 1.218 12 C 0.029 3.971 13 C -0.103 4.103 14 C -0.216 4.216 15 C -0.132 4.132 16 N -0.127 5.127 17 N -0.168 5.168 18 C 0.014 3.986 19 C -0.223 4.223 20 C -0.108 4.108 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.196 0.804 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.624 0.277 13.684 14.447 hybrid contribution -0.293 0.126 -1.198 1.240 sum -4.918 0.403 12.486 13.425 Atomic orbital electron populations 1.22379 1.00226 0.98741 1.01229 1.20825 0.91661 0.87584 0.98504 1.43828 1.76035 1.08130 1.02730 1.19014 1.04491 1.21033 0.94161 0.92403 1.25163 0.94253 1.01324 0.97996 1.70019 1.03206 1.37246 1.42373 0.86401 0.77593 0.82511 0.81335 1.20109 1.21398 1.21786 1.20902 0.94912 0.96226 0.85044 1.20711 1.00477 0.98603 0.90515 1.20442 1.10328 0.95228 0.95631 1.23827 0.98665 0.97000 0.93716 1.77193 1.23822 1.06020 1.05678 1.48513 1.52004 1.10032 1.06203 1.21520 0.98872 1.02266 0.75953 1.22052 0.95653 1.03602 1.00972 1.22235 1.03065 0.95876 0.89632 0.93691 0.93272 0.94785 0.94066 0.95017 0.93720 0.88913 0.96375 0.93307 0.91668 0.80396 0.90479 0.89151 0.92004 0.91197 0.91183 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.21 37.16 0.38 -2.67 16 2 C 0.14 3.02 6.44 -4.04 -0.03 2.99 16 3 N -0.59 -14.67 2.43 -173.24 -0.42 -15.09 16 4 C -0.26 -7.04 9.45 -15.06 -0.14 -7.18 16 5 H 0.06 1.59 7.92 -52.49 -0.42 1.18 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.75 11.47 55.49 0.64 -25.11 16 8 Si 0.89 21.63 29.60 -169.99 -5.03 16.60 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 C 0.16 3.67 5.31 -4.04 -0.02 3.65 16 13 C -0.06 -1.25 6.02 -27.88 -0.17 -1.42 16 14 C -0.20 -3.75 5.35 -105.05 -0.56 -4.31 16 15 C 0.05 0.99 11.96 -17.37 -0.21 0.79 16 16 N -0.31 -5.44 12.42 30.62 0.38 -5.06 16 17 N -0.38 -5.82 3.68 -61.37 -0.23 -6.04 16 18 C 0.14 1.41 7.23 -4.05 -0.03 1.38 16 19 C -0.16 -1.64 10.10 37.16 0.38 -1.27 16 20 C 0.04 0.57 11.36 -17.22 -0.20 0.37 16 21 H 0.04 0.80 6.64 -51.93 -0.34 0.46 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.09 2.51 5.52 -51.93 -0.29 2.23 16 28 H 0.02 0.41 7.86 -51.93 -0.41 0.01 16 29 H 0.05 0.92 6.64 -51.93 -0.34 0.58 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.18 3.08 8.06 -52.48 -0.42 2.66 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 309.30 15.07 4.66 4.66 Total: -1.00 -31.05 309.30 -6.67 -37.72 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.99 Total: -0.29 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.68 Total: -7.39 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.37 Total: -51.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.05 -6.67 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285056100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.385 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds