Wall clock time and date at job start Sun Mar 29 2020 21:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47415 * 2 1 4 4 C 1.46899 * 110.99656 * 291.53736 * 3 2 1 5 5 C 1.50698 * 109.47310 * 160.20236 * 4 3 2 6 6 H 1.08003 * 119.99438 * 4.65751 * 5 4 3 7 7 C 1.37876 * 120.00282 * 184.65278 * 5 4 3 8 8 N 1.31506 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47302 * 89.99795 * 9 7 5 11 11 H 1.48494 * 109.46829 * 209.99880 * 9 7 5 12 12 H 1.48502 * 109.46851 * 329.99885 * 9 7 5 13 13 C 1.46893 * 110.99981 * 167.58567 * 3 2 1 14 14 C 1.50704 * 109.47321 * 293.94852 * 13 3 2 15 15 C 1.35314 * 126.12614 * 270.00484 * 14 13 3 16 16 C 1.50695 * 126.04435 * 0.02562 * 15 14 13 17 17 C 1.39874 * 107.91765 * 180.28157 * 15 14 13 18 18 N 1.30848 * 108.20220 * 359.55530 * 17 15 14 19 19 N 1.34942 * 126.12397 * 90.02421 * 14 13 3 20 20 C 1.46500 * 126.04039 * 359.96589 * 19 14 13 21 21 H 1.08995 * 109.47283 * 179.28175 * 1 2 3 22 22 H 1.09003 * 109.46884 * 299.28464 * 1 2 3 23 23 H 1.08998 * 109.46848 * 59.27876 * 1 2 3 24 24 H 1.08999 * 109.47339 * 239.99288 * 2 1 3 25 25 H 1.09005 * 109.46991 * 119.99643 * 2 1 3 26 26 H 1.09000 * 109.47244 * 280.20604 * 4 3 2 27 27 H 1.09006 * 109.47076 * 40.20833 * 4 3 2 28 28 H 0.97004 * 120.00088 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.47055 * 173.94910 * 13 3 2 30 30 H 1.09002 * 109.47659 * 53.95189 * 13 3 2 31 31 H 1.09001 * 109.46853 * 89.99955 * 16 15 14 32 32 H 1.09001 * 109.46916 * 330.00600 * 16 15 14 33 33 H 1.09001 * 109.47520 * 210.00134 * 16 15 14 34 34 H 1.08002 * 125.90006 * 179.73556 * 17 15 14 35 35 H 1.09000 * 109.47608 * 89.99176 * 20 19 14 36 36 H 1.09002 * 109.47340 * 210.00040 * 20 19 14 37 37 H 1.09001 * 109.47219 * 329.99390 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7206 2.0491 -1.2757 5 6 1.7781 3.5434 -1.0898 6 1 2.0865 3.9580 -0.1414 7 6 1.4370 4.3813 -2.1303 8 7 1.0611 3.8764 -3.2849 9 14 1.5091 6.2337 -1.8999 10 1 2.8591 6.7268 -2.2732 11 1 0.4894 6.8799 -2.7646 12 1 1.2359 6.5667 -0.4787 13 6 3.4579 1.4348 0.2948 14 6 3.6974 0.9700 1.7082 15 6 3.7155 1.7514 2.8128 16 6 3.4989 3.2423 2.8478 17 6 3.9765 0.9317 3.9156 18 7 4.1009 -0.2993 3.4897 19 7 3.9326 -0.3001 2.0989 20 6 3.9998 -1.4728 1.2235 21 1 -0.3633 -1.0275 -0.0129 22 1 -0.3633 0.5027 0.8964 23 1 -0.3633 0.5250 -0.8834 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.4542 1.7474 -2.0232 27 1 0.7231 1.7627 -1.6093 28 1 0.8215 4.4658 -4.0171 29 1 3.8165 2.4581 0.1832 30 1 3.9935 0.7847 -0.3971 31 1 2.4373 3.4522 2.9785 32 1 3.8435 3.6816 1.9116 33 1 4.0592 3.6715 3.6785 34 1 4.0582 1.2579 4.9420 35 1 5.0258 -1.6144 0.8837 36 1 3.6739 -2.3558 1.7732 37 1 3.3496 -1.3208 0.3619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289079955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:37 Heat of formation + Delta-G solvation = 79.828346 kcal Electronic energy + Delta-G solvation = -17463.797333 eV Core-core repulsion = 14857.067832 eV Total energy + Delta-G solvation = -2606.729501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02728 -37.01390 -33.46618 -32.66106 -31.84265 -30.08449 -28.25642 -26.85478 -25.09817 -24.30335 -22.71328 -20.52869 -20.26617 -18.63239 -16.56317 -16.26517 -15.59374 -14.84772 -14.43430 -14.06123 -13.87979 -13.61619 -13.14419 -12.96062 -12.72296 -12.44540 -12.10259 -11.95606 -11.73943 -11.56065 -11.20517 -11.06614 -10.93523 -10.80355 -10.62958 -10.34910 -10.17739 -9.74045 -9.30439 -8.94597 -8.44414 -7.85394 -7.35372 -6.04669 -4.05736 2.18560 2.79791 3.14360 3.31144 3.37965 3.42426 4.41282 4.74955 4.88886 5.10131 5.23286 5.31569 5.32517 5.46235 5.54939 5.58347 5.72700 5.83956 5.93809 6.00461 6.15583 6.22124 6.30191 6.36060 6.50539 6.56853 6.71300 6.76563 7.05482 7.12607 7.25007 7.36695 7.78602 8.01742 8.05602 8.11293 8.47706 9.01902 9.58621 11.05962 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.007707 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.970527 B = 3632.408989 C = 4328.679357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.524 5.524 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.271 1.271 13 C 0.123 3.877 14 C 0.105 3.895 15 C -0.226 4.226 16 C -0.068 4.068 17 C 0.045 3.955 18 N -0.311 5.311 19 N -0.376 5.376 20 C 0.092 3.908 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.021 0.979 25 H 0.060 0.940 26 H -0.011 1.011 27 H 0.041 0.959 28 H 0.261 0.739 29 H 0.108 0.892 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.177 0.823 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -6.972 8.229 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 N -0.250 5.250 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.084 0.916 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.196 1.196 13 C -0.007 4.007 14 C -0.022 4.022 15 C -0.237 4.237 16 C -0.126 4.126 17 C -0.141 4.141 18 N -0.132 5.132 19 N -0.159 5.159 20 C -0.049 4.049 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.007 0.993 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.126 0.874 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.194 0.806 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.380 -8.017 8.642 12.576 hybrid contribution 0.259 1.247 -0.887 1.552 sum 4.639 -6.770 7.755 11.291 Atomic orbital electron populations 1.21748 0.95120 1.00050 1.03180 1.22265 0.96623 0.91171 0.98569 1.62168 1.11533 1.13421 1.37839 1.19848 0.96592 0.94166 0.82826 1.21165 1.44516 0.90370 0.98236 0.91639 1.24975 0.95401 0.99009 0.95173 1.69947 1.46007 1.35156 1.02877 0.86528 0.77658 0.85229 0.78237 1.20760 1.21341 1.19622 1.20621 0.90942 1.02151 0.86956 1.21069 0.99345 0.84210 0.97543 1.19838 1.14911 0.97689 0.91307 1.20028 1.01572 0.89343 1.01638 1.23666 1.00472 0.90343 0.99603 1.77215 1.25683 1.21425 0.88856 1.48311 1.56162 1.06207 1.05256 1.21992 1.03055 0.86392 0.93491 0.93646 0.92295 0.91675 0.96106 0.92170 0.99303 0.94072 0.92937 0.87399 0.95293 0.91792 0.91689 0.92929 0.80591 0.91248 0.89622 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.94 37.16 0.37 -2.10 16 2 C 0.04 0.75 4.21 -3.82 -0.02 0.73 16 3 N -0.52 -10.88 4.40 -237.51 -1.04 -11.92 16 4 C 0.19 4.71 4.61 -4.98 -0.02 4.68 16 5 C -0.50 -13.56 8.61 -34.44 -0.30 -13.85 16 6 H 0.07 1.74 7.67 -52.48 -0.40 1.34 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.12 2.31 4.71 -4.98 -0.02 2.29 16 14 C 0.11 1.85 5.61 -82.26 -0.46 1.39 16 15 C -0.23 -3.80 6.10 -105.05 -0.64 -4.44 16 16 C -0.07 -1.05 10.15 36.00 0.37 -0.68 16 17 C 0.04 0.69 11.96 -17.36 -0.21 0.49 16 18 N -0.31 -5.22 12.58 30.63 0.39 -4.84 16 19 N -0.38 -6.11 3.62 -63.88 -0.23 -6.34 16 20 C 0.09 1.15 10.20 59.85 0.61 1.76 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 24 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 25 H 0.06 1.01 4.65 -51.93 -0.24 0.77 16 26 H -0.01 -0.28 8.00 -51.93 -0.42 -0.70 16 27 H 0.04 1.09 6.01 -51.93 -0.31 0.78 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 29 H 0.11 2.16 6.34 -51.93 -0.33 1.83 16 30 H 0.03 0.52 7.70 -51.93 -0.40 0.12 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.18 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.14 4.74 -51.93 -0.25 0.89 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -30.27 297.87 -6.65 -36.92 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.54 Total: -0.80 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.42 Total: -8.32 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.15 Total: -48.39 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.27 -6.65 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289079955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.747 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds