Wall clock time and date at job start Sun Mar 29 2020 21:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47415 * 2 1 4 4 C 1.46899 * 110.99656 * 291.53736 * 3 2 1 5 5 C 1.50698 * 109.47310 * 160.20236 * 4 3 2 6 6 H 1.08003 * 119.99438 * 4.65751 * 5 4 3 7 7 C 1.37876 * 120.00282 * 184.65278 * 5 4 3 8 8 N 1.31506 * 119.99837 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99912 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47302 * 89.99795 * 9 7 5 11 11 H 1.48494 * 109.46829 * 209.99880 * 9 7 5 12 12 H 1.48502 * 109.46851 * 329.99885 * 9 7 5 13 13 C 1.46893 * 110.99981 * 167.58567 * 3 2 1 14 14 C 1.50704 * 109.47321 * 293.94852 * 13 3 2 15 15 C 1.35314 * 126.12614 * 270.00484 * 14 13 3 16 16 C 1.50695 * 126.04435 * 0.02562 * 15 14 13 17 17 C 1.39874 * 107.91765 * 180.28157 * 15 14 13 18 18 N 1.30848 * 108.20220 * 359.55530 * 17 15 14 19 19 N 1.34942 * 126.12397 * 90.02421 * 14 13 3 20 20 C 1.46500 * 126.04039 * 359.96589 * 19 14 13 21 21 H 1.08995 * 109.47283 * 179.28175 * 1 2 3 22 22 H 1.09003 * 109.46884 * 299.28464 * 1 2 3 23 23 H 1.08998 * 109.46848 * 59.27876 * 1 2 3 24 24 H 1.08999 * 109.47339 * 239.99288 * 2 1 3 25 25 H 1.09005 * 109.46991 * 119.99643 * 2 1 3 26 26 H 1.09000 * 109.47244 * 280.20604 * 4 3 2 27 27 H 1.09006 * 109.47076 * 40.20833 * 4 3 2 28 28 H 0.97004 * 120.00088 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.47055 * 173.94910 * 13 3 2 30 30 H 1.09002 * 109.47659 * 53.95189 * 13 3 2 31 31 H 1.09001 * 109.46853 * 89.99955 * 16 15 14 32 32 H 1.09001 * 109.46916 * 330.00600 * 16 15 14 33 33 H 1.09001 * 109.47520 * 210.00134 * 16 15 14 34 34 H 1.08002 * 125.90006 * 179.73556 * 17 15 14 35 35 H 1.09000 * 109.47608 * 89.99176 * 20 19 14 36 36 H 1.09002 * 109.47340 * 210.00040 * 20 19 14 37 37 H 1.09001 * 109.47219 * 329.99390 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7206 2.0491 -1.2757 5 6 1.7781 3.5434 -1.0898 6 1 2.0865 3.9580 -0.1414 7 6 1.4370 4.3813 -2.1303 8 7 1.0611 3.8764 -3.2849 9 14 1.5091 6.2337 -1.8999 10 1 2.8591 6.7268 -2.2732 11 1 0.4894 6.8799 -2.7646 12 1 1.2359 6.5667 -0.4787 13 6 3.4579 1.4348 0.2948 14 6 3.6974 0.9700 1.7082 15 6 3.7155 1.7514 2.8128 16 6 3.4989 3.2423 2.8478 17 6 3.9765 0.9317 3.9156 18 7 4.1009 -0.2993 3.4897 19 7 3.9326 -0.3001 2.0989 20 6 3.9998 -1.4728 1.2235 21 1 -0.3633 -1.0275 -0.0129 22 1 -0.3633 0.5027 0.8964 23 1 -0.3633 0.5250 -0.8834 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.4542 1.7474 -2.0232 27 1 0.7231 1.7627 -1.6093 28 1 0.8215 4.4658 -4.0171 29 1 3.8165 2.4581 0.1832 30 1 3.9935 0.7847 -0.3971 31 1 2.4373 3.4522 2.9785 32 1 3.8435 3.6816 1.9116 33 1 4.0592 3.6715 3.6785 34 1 4.0582 1.2579 4.9420 35 1 5.0258 -1.6144 0.8837 36 1 3.6739 -2.3558 1.7732 37 1 3.3496 -1.3208 0.3619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289079955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:36 Heat of formation + Delta-G solvation = 60.389053 kcal Electronic energy + Delta-G solvation = -17464.640284 eV Core-core repulsion = 14857.067832 eV Total energy + Delta-G solvation = -2607.572452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.28629 -38.63199 -34.87849 -34.47304 -33.19708 -31.58371 -29.76311 -28.42036 -26.48793 -25.72571 -24.48687 -21.92941 -21.67244 -19.98144 -18.57397 -17.55673 -17.07722 -16.55309 -15.99228 -15.45057 -15.43842 -14.99082 -14.42508 -14.36324 -14.13584 -13.88810 -13.65461 -13.28771 -13.06306 -13.01049 -12.85046 -12.72019 -12.45399 -12.42306 -12.29216 -12.09288 -11.51941 -11.46678 -11.27319 -10.55433 -10.20721 -9.14596 -9.03031 -8.15523 -6.23887 0.89209 1.44496 1.45616 1.56995 1.64741 1.89485 2.44341 3.16289 3.33129 3.64168 3.75437 4.05611 4.10187 4.29777 4.34873 4.39396 4.49192 4.54662 4.61626 4.69262 4.71082 4.86344 4.98394 5.01764 5.07216 5.20524 5.26587 5.32132 5.34555 5.47724 5.71858 5.86438 6.09715 6.10853 6.33259 6.58514 6.79464 6.91018 7.45158 8.94957 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.007707 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.970527 B = 3632.408989 C = 4328.679357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 N -0.533 5.533 4 C 0.206 3.794 5 C -0.515 4.515 6 H 0.064 0.936 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.131 3.869 14 C 0.088 3.912 15 C -0.238 4.238 16 C -0.064 4.064 17 C 0.048 3.952 18 N -0.324 5.324 19 N -0.378 5.378 20 C 0.084 3.916 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.039 0.961 24 H 0.028 0.972 25 H 0.076 0.924 26 H -0.035 1.035 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.211 0.789 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -7.168 9.776 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 N -0.258 5.258 4 C 0.081 3.919 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.194 4.194 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.188 1.188 13 C 0.001 3.999 14 C -0.039 4.039 15 C -0.250 4.250 16 C -0.122 4.122 17 C -0.137 4.137 18 N -0.145 5.145 19 N -0.162 5.162 20 C -0.056 4.056 21 H 0.097 0.903 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.095 0.905 26 H -0.017 1.017 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.227 0.773 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.913 -8.238 10.203 14.004 hybrid contribution 0.118 1.229 -1.337 1.820 sum 5.031 -7.009 8.866 12.371 Atomic orbital electron populations 1.21715 0.94687 1.01728 1.01504 1.22348 0.96971 0.89607 0.99592 1.62067 1.13138 1.15289 1.35283 1.19476 0.94619 0.93749 0.84072 1.21469 1.44043 0.91657 0.98156 0.91735 1.25810 0.95033 1.03681 0.94837 1.70067 1.47062 1.36791 1.03707 0.85499 0.77857 0.79611 0.78417 1.19916 1.21152 1.18806 1.20422 0.89665 1.01411 0.88363 1.20868 1.00872 0.85355 0.96819 1.20145 1.14748 0.98355 0.91728 1.20007 1.01245 0.88915 1.02044 1.24176 0.99244 0.89525 1.00779 1.77190 1.26047 1.22167 0.89094 1.48569 1.55683 1.06471 1.05438 1.22250 1.04294 0.85863 0.93225 0.90303 0.93054 0.94148 0.95388 0.90537 1.01716 0.96237 0.92851 0.89228 0.94605 0.92837 0.93237 0.90002 0.77260 0.89529 0.87815 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.94 71.98 0.72 -3.97 16 2 C 0.04 1.49 4.21 86.30 0.36 1.85 16 3 N -0.53 -22.28 4.40 -905.35 -3.98 -26.26 16 4 C 0.21 10.52 4.61 85.56 0.39 10.92 16 5 C -0.51 -28.18 8.61 25.60 0.22 -27.96 16 6 H 0.06 3.47 7.67 -2.91 -0.02 3.45 16 7 C 0.00 0.23 5.46 84.66 0.46 0.69 16 8 N -0.94 -55.07 13.29 21.45 0.28 -54.79 16 9 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.13 4.93 4.71 85.56 0.40 5.33 16 14 C 0.09 3.00 5.61 41.41 0.23 3.24 16 15 C -0.24 -7.66 6.10 -20.14 -0.12 -7.78 16 16 C -0.06 -1.91 10.15 71.23 0.72 -1.19 16 17 C 0.05 1.36 11.96 85.24 1.02 2.38 16 18 N -0.32 -10.11 12.58 -57.01 -0.72 -10.83 16 19 N -0.38 -11.57 3.62 -356.03 -1.29 -12.86 16 20 C 0.08 1.91 10.20 127.77 1.30 3.21 16 21 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.04 1.55 6.33 -2.39 -0.02 1.54 16 24 H 0.03 0.94 7.75 -2.39 -0.02 0.92 16 25 H 0.08 2.44 4.65 -2.38 -0.01 2.43 16 26 H -0.03 -1.91 8.00 -2.39 -0.02 -1.92 16 27 H 0.02 1.08 6.01 -2.38 -0.01 1.06 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.09 3.67 6.34 -2.38 -0.02 3.66 16 30 H 0.04 1.28 7.70 -2.39 -0.02 1.26 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.60 7.15 -2.39 -0.02 1.59 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.21 4.26 8.06 -2.91 -0.02 4.23 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 2.07 4.74 -2.39 -0.01 2.06 16 Total: -1.00 -64.59 297.87 3.09 -61.50 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.05 Total: 11.01 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 5.71 Total: -13.28 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.70 Total: -104.74 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.59 3.09 -61.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289079955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.889 kcal (2) G-P(sol) polarization free energy of solvation -64.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds