Wall clock time and date at job start Sun Mar 29 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47083 * 2 1 4 4 H 1.08997 * 109.46854 * 305.00091 * 3 2 1 5 5 C 1.50693 * 109.47172 * 185.00050 * 3 2 1 6 6 H 1.08009 * 120.00181 * 240.00384 * 5 3 2 7 7 C 1.37880 * 120.00579 * 59.99600 * 5 3 2 8 8 N 1.31520 * 119.99242 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00307 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47054 * 60.00516 * 9 7 5 11 11 H 1.48504 * 109.47103 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47109 * 300.00019 * 9 7 5 13 13 N 1.46896 * 109.46892 * 64.99835 * 3 2 1 14 14 C 1.46831 * 111.00177 * 190.00041 * 13 3 2 15 15 C 1.53199 * 109.44231 * 172.20623 * 14 13 3 16 16 C 1.52800 * 109.01526 * 56.89007 * 15 14 13 17 17 C 1.53358 * 113.57282 * 77.12720 * 16 15 14 18 18 C 1.53857 * 86.94603 * 139.94412 * 17 16 15 19 19 C 1.53587 * 113.62497 * 175.14062 * 16 15 14 20 20 C 1.52803 * 112.68153 * 306.18069 * 16 15 14 21 21 C 1.46836 * 111.00356 * 65.46842 * 13 3 2 22 22 H 1.08998 * 109.46859 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47100 * 299.99996 * 1 2 3 24 24 H 1.09000 * 109.46691 * 60.00104 * 1 2 3 25 25 H 1.08998 * 109.47837 * 240.00098 * 2 1 3 26 26 H 1.08997 * 109.47415 * 119.99339 * 2 1 3 27 27 H 0.97002 * 119.99558 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47172 * 52.21200 * 14 13 3 29 29 H 1.09003 * 109.47822 * 292.20336 * 14 13 3 30 30 H 1.08996 * 109.54995 * 297.03221 * 15 14 13 31 31 H 1.09003 * 109.62600 * 176.79411 * 15 14 13 32 32 H 1.09003 * 113.63245 * 25.42980 * 17 16 15 33 33 H 1.08992 * 113.63565 * 254.45839 * 17 16 15 34 34 H 1.09002 * 113.60162 * 89.46507 * 18 17 16 35 35 H 1.09003 * 113.60166 * 220.24126 * 18 17 16 36 36 H 1.08995 * 113.71531 * 105.61565 * 19 16 15 37 37 H 1.09002 * 113.63683 * 334.57673 * 19 16 15 38 38 H 1.08994 * 109.54693 * 173.67694 * 20 16 15 39 39 H 1.09001 * 109.54350 * 293.95904 * 20 16 15 40 40 H 1.08999 * 109.46881 * 307.79122 * 21 13 3 41 41 H 1.09001 * 109.47153 * 67.79429 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1434 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5966 0.1453 -0.2342 11 1 6.3979 0.2168 -2.6502 12 1 6.5004 2.2800 -1.3807 13 7 1.6513 2.0993 1.2552 14 6 1.9122 3.5431 1.1965 15 6 1.3195 4.2192 2.4368 16 6 1.9146 3.5743 3.6877 17 6 3.3426 4.0398 3.9975 18 6 2.9282 4.0551 5.4791 19 6 1.4810 4.2527 4.9956 20 6 1.7502 2.0552 3.7025 21 6 2.3232 1.4787 2.4039 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8935 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8293 -0.0604 -2.9502 28 1 1.4517 3.9594 0.3005 29 1 2.9879 3.7171 1.1666 30 1 0.2371 4.0907 2.4401 31 1 1.5605 5.2822 2.4247 32 1 3.5765 5.0270 3.5989 33 1 4.1048 3.2963 3.7646 34 1 3.0924 3.1053 5.9880 35 1 3.3231 4.9062 6.0340 36 1 0.7482 3.6803 5.5643 37 1 1.2002 5.2988 4.8731 38 1 2.2871 1.6386 4.5546 39 1 0.6923 1.8037 3.7777 40 1 2.1601 0.4012 2.3815 41 1 3.3923 1.6855 2.3548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308742146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:11 Heat of formation + Delta-G solvation = 5.945552 kcal Electronic energy + Delta-G solvation = -18265.232485 eV Core-core repulsion = 15758.839529 eV Total energy + Delta-G solvation = -2506.392956 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.92872 -36.86832 -33.32948 -31.48103 -30.21781 -29.40113 -26.21689 -25.49840 -23.56972 -22.65262 -22.34114 -20.22368 -19.05465 -17.64824 -16.13029 -15.44414 -15.09751 -14.61515 -14.18287 -13.73653 -13.55072 -13.08118 -12.75756 -12.54487 -12.17439 -11.97405 -11.76168 -11.49761 -11.13538 -11.08593 -10.90346 -10.73831 -10.64892 -10.52246 -10.45161 -9.98585 -9.90237 -9.71311 -9.58550 -9.37887 -9.14094 -8.97612 -8.32181 -7.00780 -5.94782 -4.08288 3.28963 3.34210 3.36782 4.41768 4.80914 4.87534 4.92245 5.03909 5.24069 5.30192 5.54312 5.70210 5.80221 5.87295 5.98744 6.03219 6.12157 6.16818 6.20465 6.23405 6.31456 6.40074 6.44168 6.51460 6.60962 6.68664 6.71446 6.77748 6.80909 6.88577 7.02364 7.17719 7.24690 7.42946 7.66509 7.81423 8.05911 8.22662 8.41323 8.56156 9.02848 9.58995 11.03818 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025246 B = 0.008361 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.819262 B = 3348.160071 C = 4004.866491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.533 5.533 14 C 0.067 3.933 15 C -0.099 4.099 16 C -0.072 4.072 17 C -0.133 4.133 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.092 4.092 21 C 0.066 3.934 22 H 0.024 0.976 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.091 0.909 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 5.177 10.756 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.062 4.062 15 C -0.137 4.137 16 C -0.072 4.072 17 C -0.171 4.171 18 C -0.179 4.179 19 C -0.172 4.172 20 C -0.129 4.129 21 C -0.063 4.063 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.567 5.014 10.622 12.275 hybrid contribution 2.037 0.096 -0.314 2.063 sum -1.530 5.110 10.308 11.606 Atomic orbital electron populations 1.21701 0.98908 0.98306 1.00558 1.21601 0.92217 0.99288 1.01806 1.19252 0.92918 0.91150 0.85886 0.94602 1.21733 0.92977 1.37894 1.05364 0.92673 1.24911 0.97665 0.95147 0.95738 1.69871 1.34778 1.38426 1.09416 0.86768 0.86422 0.78162 0.77304 1.20386 1.21266 1.20439 1.62250 1.57272 1.01636 1.04616 1.21796 0.98386 0.89931 0.96042 1.21543 1.00236 0.97590 0.94292 1.21565 0.95589 0.95888 0.94137 1.22926 0.97302 1.01258 0.95570 1.22828 0.97036 1.01231 0.96757 1.22981 0.96364 1.00403 0.97466 1.21409 1.01104 0.92598 0.97827 1.21867 0.96383 0.98604 0.89436 0.95718 0.93342 0.94311 0.89081 0.94941 0.92908 0.92207 0.94926 0.91958 0.92805 0.90646 0.91545 0.90559 0.92278 0.91921 0.90675 0.92708 0.91806 0.91347 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.47 16 2 C -0.11 -2.64 5.16 -26.73 -0.14 -2.77 16 3 C 0.21 5.28 1.70 -68.87 -0.12 5.16 16 4 H 0.04 0.99 7.96 -51.93 -0.41 0.57 16 5 C -0.54 -14.44 7.27 -34.44 -0.25 -14.69 16 6 H 0.06 1.49 5.89 -52.48 -0.31 1.18 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.00 11.29 55.43 0.63 -24.37 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.53 -11.21 4.01 -227.89 -0.91 -12.12 16 14 C 0.07 1.31 5.11 -3.76 -0.02 1.29 16 15 C -0.10 -1.56 5.28 -26.73 -0.14 -1.70 16 16 C -0.07 -1.05 0.77 -154.22 -0.12 -1.17 16 17 C -0.13 -1.89 6.97 -26.10 -0.18 -2.07 16 18 C -0.14 -1.69 7.72 -25.84 -0.20 -1.89 16 19 C -0.13 -1.66 7.25 -25.98 -0.19 -1.85 16 20 C -0.09 -1.46 5.20 -26.73 -0.14 -1.59 16 21 C 0.07 1.28 4.70 -3.75 -0.02 1.27 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 26 H 0.03 0.76 6.18 -51.93 -0.32 0.44 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.06 1.19 7.98 -51.93 -0.41 0.78 16 29 H 0.03 0.69 7.28 -51.93 -0.38 0.31 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 33 H 0.07 1.03 7.56 -51.93 -0.39 0.64 16 34 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.07 0.87 8.10 -51.93 -0.42 0.44 16 38 H 0.05 0.80 7.34 -51.93 -0.38 0.41 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.40 6.04 -51.93 -0.31 1.08 16 41 H 0.04 0.76 5.92 -51.93 -0.31 0.45 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -26.89 303.17 -9.24 -36.13 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.26 Total: 0.32 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.24 Total: -20.74 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.29 Total: -36.49 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.89 -9.24 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308742146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.076 kcal (2) G-P(sol) polarization free energy of solvation -26.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds