Wall clock time and date at job start Sun Mar 29 2020 22:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.47083 * 2 1 4 4 H 1.08997 * 109.46854 * 305.00091 * 3 2 1 5 5 C 1.50693 * 109.47172 * 185.00050 * 3 2 1 6 6 H 1.08009 * 120.00181 * 240.00384 * 5 3 2 7 7 C 1.37880 * 120.00579 * 59.99600 * 5 3 2 8 8 N 1.31520 * 119.99242 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00307 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47054 * 60.00516 * 9 7 5 11 11 H 1.48504 * 109.47103 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47109 * 300.00019 * 9 7 5 13 13 N 1.46896 * 109.46892 * 64.99835 * 3 2 1 14 14 C 1.46831 * 111.00177 * 190.00041 * 13 3 2 15 15 C 1.53199 * 109.44231 * 172.20623 * 14 13 3 16 16 C 1.52800 * 109.01526 * 56.89007 * 15 14 13 17 17 C 1.53358 * 113.57282 * 77.12720 * 16 15 14 18 18 C 1.53857 * 86.94603 * 139.94412 * 17 16 15 19 19 C 1.53587 * 113.62497 * 175.14062 * 16 15 14 20 20 C 1.52803 * 112.68153 * 306.18069 * 16 15 14 21 21 C 1.46836 * 111.00356 * 65.46842 * 13 3 2 22 22 H 1.08998 * 109.46859 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47100 * 299.99996 * 1 2 3 24 24 H 1.09000 * 109.46691 * 60.00104 * 1 2 3 25 25 H 1.08998 * 109.47837 * 240.00098 * 2 1 3 26 26 H 1.08997 * 109.47415 * 119.99339 * 2 1 3 27 27 H 0.97002 * 119.99558 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47172 * 52.21200 * 14 13 3 29 29 H 1.09003 * 109.47822 * 292.20336 * 14 13 3 30 30 H 1.08996 * 109.54995 * 297.03221 * 15 14 13 31 31 H 1.09003 * 109.62600 * 176.79411 * 15 14 13 32 32 H 1.09003 * 113.63245 * 25.42980 * 17 16 15 33 33 H 1.08992 * 113.63565 * 254.45839 * 17 16 15 34 34 H 1.09002 * 113.60162 * 89.46507 * 18 17 16 35 35 H 1.09003 * 113.60166 * 220.24126 * 18 17 16 36 36 H 1.08995 * 113.71531 * 105.61565 * 19 16 15 37 37 H 1.09002 * 113.63683 * 334.57673 * 19 16 15 38 38 H 1.08994 * 109.54693 * 173.67694 * 20 16 15 39 39 H 1.09001 * 109.54350 * 293.95904 * 20 16 15 40 40 H 1.08999 * 109.46881 * 307.79122 * 21 13 3 41 41 H 1.09001 * 109.47153 * 67.79429 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6524 7 6 4.1434 0.8785 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5966 0.1453 -0.2342 11 1 6.3979 0.2168 -2.6502 12 1 6.5004 2.2800 -1.3807 13 7 1.6513 2.0993 1.2552 14 6 1.9122 3.5431 1.1965 15 6 1.3195 4.2192 2.4368 16 6 1.9146 3.5743 3.6877 17 6 3.3426 4.0398 3.9975 18 6 2.9282 4.0551 5.4791 19 6 1.4810 4.2527 4.9956 20 6 1.7502 2.0552 3.7025 21 6 2.3232 1.4787 2.4039 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8935 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 3.8293 -0.0604 -2.9502 28 1 1.4517 3.9594 0.3005 29 1 2.9879 3.7171 1.1666 30 1 0.2371 4.0907 2.4401 31 1 1.5605 5.2822 2.4247 32 1 3.5765 5.0270 3.5989 33 1 4.1048 3.2963 3.7646 34 1 3.0924 3.1053 5.9880 35 1 3.3231 4.9062 6.0340 36 1 0.7482 3.6803 5.5643 37 1 1.2002 5.2988 4.8731 38 1 2.2871 1.6386 4.5546 39 1 0.6923 1.8037 3.7777 40 1 2.1601 0.4012 2.3815 41 1 3.3923 1.6855 2.3548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308742146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:11 Heat of formation + Delta-G solvation = -7.907796 kcal Electronic energy + Delta-G solvation = -18265.833211 eV Core-core repulsion = 15758.839529 eV Total energy + Delta-G solvation = -2506.993682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18800 -38.49855 -35.12613 -33.40253 -31.68218 -30.92007 -28.10101 -26.59122 -25.23040 -24.14501 -23.88337 -21.62730 -20.88162 -19.06738 -17.95769 -17.17819 -16.30329 -16.21999 -15.78402 -15.35407 -14.98017 -14.82843 -14.32345 -14.00939 -13.50777 -13.46760 -13.26197 -13.15892 -12.88655 -12.74831 -12.66082 -12.31961 -12.08078 -11.97191 -11.83629 -11.75959 -11.53658 -11.37444 -11.08067 -10.86859 -10.78759 -10.47272 -10.41571 -8.85115 -8.02058 -6.25556 1.35386 1.35946 1.43423 2.38609 3.14414 3.44233 3.76087 3.79224 3.84272 4.06322 4.23801 4.44104 4.49719 4.63155 4.71876 4.75593 4.79681 4.80691 4.91056 4.92479 4.93222 4.96792 5.07904 5.11677 5.14010 5.18215 5.27816 5.34456 5.35156 5.43201 5.45337 5.52589 5.61201 5.67796 5.71370 5.81424 6.09611 6.23994 6.43106 6.76275 6.97524 7.45151 8.91527 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025246 B = 0.008361 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.819262 B = 3348.160071 C = 4004.866491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.528 5.528 14 C 0.067 3.933 15 C -0.089 4.089 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.082 4.082 21 C 0.070 3.930 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 5.935 12.914 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.252 5.252 14 C -0.061 4.061 15 C -0.127 4.127 16 C -0.082 4.082 17 C -0.178 4.178 18 C -0.168 4.168 19 C -0.157 4.157 20 C -0.120 4.120 21 C -0.059 4.059 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -3.968 5.780 12.794 14.589 hybrid contribution 2.172 -0.131 -1.019 2.403 sum -1.796 5.649 11.775 13.183 Atomic orbital electron populations 1.21555 0.96237 0.99764 1.00639 1.21441 0.94563 0.98196 1.00195 1.19035 0.91638 0.91580 0.86543 0.98235 1.21952 0.94228 1.37523 1.05130 0.93563 1.25604 1.01666 0.95031 0.95585 1.69997 1.36239 1.39024 1.09763 0.85845 0.81667 0.78127 0.77405 1.19957 1.20692 1.20218 1.62237 1.56999 1.02395 1.03572 1.21837 0.97123 0.89257 0.97914 1.21486 1.00227 0.98285 0.92669 1.21627 0.96363 0.95111 0.95103 1.22966 0.96316 1.00700 0.97807 1.22794 0.96600 1.02260 0.95125 1.22913 0.96754 1.00954 0.95115 1.21330 1.01299 0.93547 0.95826 1.21853 0.95098 0.98116 0.90812 0.93559 0.92382 0.94980 0.92079 0.95016 0.92940 0.93467 0.97300 0.91413 0.90895 0.90381 0.93786 0.90116 0.90558 0.90767 0.89320 0.90969 0.91157 0.92546 0.97140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.80 71.98 0.71 -4.37 16 2 C -0.11 -5.13 5.16 30.60 0.16 -4.97 16 3 C 0.22 11.18 1.70 44.17 0.08 11.26 16 4 H 0.00 -0.02 7.96 -2.39 -0.02 -0.04 16 5 C -0.55 -30.33 7.27 25.60 0.19 -30.14 16 6 H 0.05 2.59 5.89 -2.91 -0.02 2.57 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -52.78 11.29 21.45 0.24 -52.54 16 9 Si 0.94 44.33 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 N -0.53 -22.52 4.01 -874.91 -3.51 -26.03 16 14 C 0.07 2.66 5.11 86.38 0.44 3.10 16 15 C -0.09 -2.65 5.28 30.59 0.16 -2.49 16 16 C -0.08 -2.22 0.77 -52.00 -0.04 -2.26 16 17 C -0.14 -3.74 6.97 31.00 0.22 -3.52 16 18 C -0.13 -2.67 7.72 31.17 0.24 -2.43 16 19 C -0.12 -2.47 7.25 31.08 0.23 -2.24 16 20 C -0.08 -2.46 5.20 30.60 0.16 -2.30 16 21 C 0.07 2.73 4.70 86.38 0.41 3.14 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 23 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 26 H 0.03 1.51 6.18 -2.39 -0.01 1.49 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.05 1.94 7.98 -2.38 -0.02 1.92 16 29 H 0.01 0.38 7.28 -2.39 -0.02 0.37 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 32 H 0.08 2.01 8.03 -2.39 -0.02 1.99 16 33 H 0.04 1.35 7.56 -2.39 -0.02 1.33 16 34 H 0.08 1.60 7.64 -2.39 -0.02 1.58 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.07 1.92 7.34 -2.39 -0.02 1.90 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 2.32 6.04 -2.39 -0.01 2.31 16 41 H 0.01 0.46 5.92 -2.39 -0.01 0.44 16 Total: -1.00 -58.97 303.17 3.11 -55.86 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.97 Total: 11.99 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 3.38 Total: -35.62 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.27 Total: -78.58 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -58.97 3.11 -55.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308742146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.947 kcal (2) G-P(sol) polarization free energy of solvation -58.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds