Wall clock time and date at job start Sun Mar 29 2020 22:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 H 1.08997 * 109.46787 * 56.70780 * 3 2 1 5 5 C 1.50698 * 109.46872 * 176.71306 * 3 2 1 6 6 H 1.07997 * 119.99701 * 120.00141 * 5 3 2 7 7 C 1.37877 * 120.00091 * 299.99788 * 5 3 2 8 8 N 1.31514 * 120.00003 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99812 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47635 * 90.00178 * 9 7 5 11 11 H 1.48510 * 109.46972 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47272 * 329.99300 * 9 7 5 13 13 N 1.46897 * 109.46960 * 296.71392 * 3 2 1 14 14 C 1.46840 * 110.99903 * 298.57896 * 13 3 2 15 15 C 1.53211 * 109.43382 * 172.20782 * 14 13 3 16 16 C 1.52786 * 109.01277 * 56.89240 * 15 14 13 17 17 C 1.53351 * 113.58037 * 77.12998 * 16 15 14 18 18 C 1.53858 * 86.95440 * 139.93551 * 17 16 15 19 19 C 1.53602 * 113.62213 * 175.14044 * 16 15 14 20 20 C 1.52798 * 112.68539 * 306.16733 * 16 15 14 21 21 C 1.46829 * 111.00385 * 174.04634 * 13 3 2 22 22 H 1.08994 * 109.47845 * 185.07433 * 1 2 3 23 23 H 1.09004 * 109.47273 * 305.07139 * 1 2 3 24 24 H 1.09004 * 109.47182 * 65.06798 * 1 2 3 25 25 H 1.08997 * 109.46820 * 239.99849 * 2 1 3 26 26 H 1.08999 * 109.46726 * 119.99997 * 2 1 3 27 27 H 0.96997 * 120.00019 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47560 * 52.22252 * 14 13 3 29 29 H 1.08998 * 109.47651 * 292.20163 * 14 13 3 30 30 H 1.08994 * 109.55062 * 297.02858 * 15 14 13 31 31 H 1.09000 * 109.61858 * 176.79333 * 15 14 13 32 32 H 1.09001 * 113.63468 * 25.41598 * 17 16 15 33 33 H 1.09000 * 113.63555 * 254.45580 * 17 16 15 34 34 H 1.09004 * 113.59648 * 89.46489 * 18 17 16 35 35 H 1.08999 * 113.60273 * 220.23814 * 18 17 16 36 36 H 1.08994 * 113.71779 * 105.61271 * 19 16 15 37 37 H 1.09008 * 113.62976 * 334.57264 * 19 16 15 38 38 H 1.08999 * 109.55056 * 173.68281 * 20 16 15 39 39 H 1.08996 * 109.55220 * 293.96936 * 20 16 15 40 40 H 1.09003 * 109.46964 * 307.79117 * 21 13 3 41 41 H 1.09003 * 109.47238 * 67.80071 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6294 1.9730 0.8590 5 6 3.5449 1.4431 0.0815 6 1 4.1281 1.8955 -0.7069 7 6 4.1770 0.8663 1.1625 8 7 3.4667 0.3160 2.1229 9 14 6.0422 0.8678 1.2638 10 1 6.4989 2.0936 1.9665 11 1 6.4982 -0.3309 2.0126 12 1 6.6124 0.8415 -0.1071 13 7 1.6163 2.1116 -1.2371 14 6 2.1796 1.4427 -2.4167 15 6 1.5648 2.0429 -3.6853 16 6 1.8201 3.5492 -3.6975 17 6 3.2519 3.9255 -4.0974 18 6 2.6355 5.0833 -4.9015 19 6 1.3495 4.2427 -4.9847 20 6 1.3407 4.2385 -2.4209 21 6 1.9659 3.5375 -1.2105 22 1 -0.3634 -1.0235 0.0909 23 1 -0.3634 0.5905 0.8411 24 1 -0.3634 0.4332 -0.9319 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9114 -0.0901 2.8832 28 1 1.9541 0.3772 -2.3726 29 1 3.2601 1.5852 -2.4340 30 1 0.4912 1.8548 -3.6944 31 1 2.0222 1.5883 -4.5640 32 1 3.7438 3.1759 -4.7174 33 1 3.8675 4.2540 -3.2600 34 1 2.5202 6.0016 -4.3257 35 1 3.1134 5.2468 -5.8674 36 1 0.4374 4.8261 -4.8601 37 1 1.3153 3.5809 -5.8502 38 1 1.6464 5.2847 -2.4344 39 1 0.2544 4.1754 -2.3581 40 1 1.5859 3.9877 -0.2934 41 1 3.0498 3.6466 -1.2470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308742147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:13 Heat of formation + Delta-G solvation = 6.007640 kcal Electronic energy + Delta-G solvation = -18271.226789 eV Core-core repulsion = 15764.836525 eV Total energy + Delta-G solvation = -2506.390263 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.92933 -36.88939 -33.30213 -31.47447 -30.35304 -29.27365 -26.22158 -25.49549 -23.59656 -22.89789 -21.98043 -20.41322 -18.96253 -17.63297 -16.18326 -15.36450 -15.14220 -14.61726 -14.17191 -13.81029 -13.57261 -13.06260 -12.66546 -12.55527 -12.19642 -12.06761 -11.61293 -11.48599 -11.24661 -11.07725 -10.84928 -10.80490 -10.63934 -10.50218 -10.44521 -9.99708 -9.82487 -9.69791 -9.61484 -9.51198 -9.05775 -8.97777 -8.32642 -7.00980 -5.94901 -4.08394 3.27436 3.34863 3.37738 4.41708 4.81015 4.87617 4.92216 5.03909 5.24919 5.29687 5.53989 5.70934 5.80242 5.87391 5.99414 6.02834 6.12037 6.16846 6.20468 6.23465 6.32640 6.39870 6.43791 6.49675 6.61277 6.68084 6.71165 6.78245 6.80946 6.88764 7.03161 7.15852 7.24967 7.41227 7.66999 7.80981 8.05599 8.23132 8.41503 8.55310 9.02904 9.58987 11.03639 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.008382 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.596657 B = 3339.806727 C = 4024.113560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.533 5.533 14 C 0.064 3.936 15 C -0.100 4.100 16 C -0.072 4.072 17 C -0.133 4.133 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.090 4.090 21 C 0.067 3.933 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 5.485 -10.503 12.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.064 4.064 15 C -0.138 4.138 16 C -0.072 4.072 17 C -0.170 4.170 18 C -0.179 4.179 19 C -0.172 4.172 20 C -0.128 4.128 21 C -0.061 4.061 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.918 5.350 -10.345 12.288 hybrid contribution 2.061 0.005 0.216 2.072 sum -1.857 5.355 -10.129 11.607 Atomic orbital electron populations 1.21690 0.98861 0.98251 1.00548 1.21623 0.92202 0.99301 1.01913 1.19265 0.92661 0.90971 0.86342 0.94545 1.21760 0.92883 1.37303 1.05928 0.92667 1.24908 0.97756 0.95148 0.95658 1.69875 1.34832 1.38060 1.09734 0.86712 0.86460 0.77499 0.78022 1.20791 1.21213 1.20098 1.62268 1.58622 1.01120 1.03747 1.21871 0.96860 0.98215 0.89451 1.21566 1.00901 0.93668 0.97671 1.21560 0.95643 0.95686 0.94293 1.22924 0.96665 0.97768 0.99680 1.22830 0.97560 0.97604 0.99865 1.22984 0.97275 0.98811 0.98144 1.21382 1.00493 0.97456 0.93455 1.21798 0.97990 0.90173 0.96177 0.95718 0.94210 0.93544 0.94820 0.89088 0.92967 0.91386 0.94812 0.92033 0.92869 0.90641 0.91559 0.90569 0.92278 0.91928 0.90665 0.92656 0.91740 0.92062 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.72 37.16 0.36 -2.43 16 2 C -0.11 -2.66 5.03 -26.73 -0.13 -2.80 16 3 C 0.21 5.27 1.75 -68.87 -0.12 5.14 16 4 H 0.04 1.00 8.04 -51.93 -0.42 0.59 16 5 C -0.54 -14.41 7.23 -34.44 -0.25 -14.66 16 6 H 0.06 1.50 5.88 -52.49 -0.31 1.19 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.99 11.30 55.43 0.63 -24.37 16 9 Si 0.88 21.25 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -11.20 4.06 -227.89 -0.93 -12.13 16 14 C 0.06 1.26 4.73 -3.75 -0.02 1.25 16 15 C -0.10 -1.60 5.28 -26.73 -0.14 -1.74 16 16 C -0.07 -1.05 0.77 -154.23 -0.12 -1.17 16 17 C -0.13 -1.89 6.97 -26.10 -0.18 -2.07 16 18 C -0.14 -1.69 7.73 -25.84 -0.20 -1.89 16 19 C -0.13 -1.66 7.25 -25.97 -0.19 -1.85 16 20 C -0.09 -1.42 5.19 -26.73 -0.14 -1.55 16 21 C 0.07 1.31 5.04 -3.76 -0.02 1.29 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 25 H 0.03 0.79 6.11 -51.93 -0.32 0.47 16 26 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.07 1.39 5.90 -51.93 -0.31 1.08 16 29 H 0.03 0.73 6.60 -51.93 -0.34 0.38 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.77 8.05 -51.93 -0.42 0.36 16 32 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 33 H 0.07 1.03 7.56 -51.93 -0.39 0.63 16 34 H 0.08 0.88 7.64 -51.93 -0.40 0.49 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.07 0.87 8.10 -51.92 -0.42 0.45 16 38 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.22 8.03 -51.93 -0.42 0.80 16 41 H 0.03 0.72 6.53 -51.93 -0.34 0.38 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -26.91 302.99 -9.26 -36.17 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.26 Total: 0.28 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.24 Total: -20.74 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.30 Total: -36.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.91 -9.26 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308742147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.180 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds