Wall clock time and date at job start Sun Mar 29 2020 22:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 H 1.08997 * 109.46787 * 56.70780 * 3 2 1 5 5 C 1.50698 * 109.46872 * 176.71306 * 3 2 1 6 6 H 1.07997 * 119.99701 * 120.00141 * 5 3 2 7 7 C 1.37877 * 120.00091 * 299.99788 * 5 3 2 8 8 N 1.31514 * 120.00003 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99812 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47635 * 90.00178 * 9 7 5 11 11 H 1.48510 * 109.46972 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47272 * 329.99300 * 9 7 5 13 13 N 1.46897 * 109.46960 * 296.71392 * 3 2 1 14 14 C 1.46840 * 110.99903 * 298.57896 * 13 3 2 15 15 C 1.53211 * 109.43382 * 172.20782 * 14 13 3 16 16 C 1.52786 * 109.01277 * 56.89240 * 15 14 13 17 17 C 1.53351 * 113.58037 * 77.12998 * 16 15 14 18 18 C 1.53858 * 86.95440 * 139.93551 * 17 16 15 19 19 C 1.53602 * 113.62213 * 175.14044 * 16 15 14 20 20 C 1.52798 * 112.68539 * 306.16733 * 16 15 14 21 21 C 1.46829 * 111.00385 * 174.04634 * 13 3 2 22 22 H 1.08994 * 109.47845 * 185.07433 * 1 2 3 23 23 H 1.09004 * 109.47273 * 305.07139 * 1 2 3 24 24 H 1.09004 * 109.47182 * 65.06798 * 1 2 3 25 25 H 1.08997 * 109.46820 * 239.99849 * 2 1 3 26 26 H 1.08999 * 109.46726 * 119.99997 * 2 1 3 27 27 H 0.96997 * 120.00019 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.47560 * 52.22252 * 14 13 3 29 29 H 1.08998 * 109.47651 * 292.20163 * 14 13 3 30 30 H 1.08994 * 109.55062 * 297.02858 * 15 14 13 31 31 H 1.09000 * 109.61858 * 176.79333 * 15 14 13 32 32 H 1.09001 * 113.63468 * 25.41598 * 17 16 15 33 33 H 1.09000 * 113.63555 * 254.45580 * 17 16 15 34 34 H 1.09004 * 113.59648 * 89.46489 * 18 17 16 35 35 H 1.08999 * 113.60273 * 220.23814 * 18 17 16 36 36 H 1.08994 * 113.71779 * 105.61271 * 19 16 15 37 37 H 1.09008 * 113.62976 * 334.57264 * 19 16 15 38 38 H 1.08999 * 109.55056 * 173.68281 * 20 16 15 39 39 H 1.08996 * 109.55220 * 293.96936 * 20 16 15 40 40 H 1.09003 * 109.46964 * 307.79117 * 21 13 3 41 41 H 1.09003 * 109.47238 * 67.80071 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6294 1.9730 0.8590 5 6 3.5449 1.4431 0.0815 6 1 4.1281 1.8955 -0.7069 7 6 4.1770 0.8663 1.1625 8 7 3.4667 0.3160 2.1229 9 14 6.0422 0.8678 1.2638 10 1 6.4989 2.0936 1.9665 11 1 6.4982 -0.3309 2.0126 12 1 6.6124 0.8415 -0.1071 13 7 1.6163 2.1116 -1.2371 14 6 2.1796 1.4427 -2.4167 15 6 1.5648 2.0429 -3.6853 16 6 1.8201 3.5492 -3.6975 17 6 3.2519 3.9255 -4.0974 18 6 2.6355 5.0833 -4.9015 19 6 1.3495 4.2427 -4.9847 20 6 1.3407 4.2385 -2.4209 21 6 1.9659 3.5375 -1.2105 22 1 -0.3634 -1.0235 0.0909 23 1 -0.3634 0.5905 0.8411 24 1 -0.3634 0.4332 -0.9319 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9114 -0.0901 2.8832 28 1 1.9541 0.3772 -2.3726 29 1 3.2601 1.5852 -2.4340 30 1 0.4912 1.8548 -3.6944 31 1 2.0222 1.5883 -4.5640 32 1 3.7438 3.1759 -4.7174 33 1 3.8675 4.2540 -3.2600 34 1 2.5202 6.0016 -4.3257 35 1 3.1134 5.2468 -5.8674 36 1 0.4374 4.8261 -4.8601 37 1 1.3153 3.5809 -5.8502 38 1 1.6464 5.2847 -2.4344 39 1 0.2544 4.1754 -2.3581 40 1 1.5859 3.9877 -0.2934 41 1 3.0498 3.6466 -1.2470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308742147.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:13 Heat of formation + Delta-G solvation = -7.911190 kcal Electronic energy + Delta-G solvation = -18271.830354 eV Core-core repulsion = 15764.836525 eV Total energy + Delta-G solvation = -2506.993829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19046 -38.51939 -35.10407 -33.39413 -31.81013 -30.79627 -28.10386 -26.59178 -25.22530 -24.47104 -23.47142 -21.84140 -20.77753 -19.02502 -18.02685 -17.14801 -16.27981 -16.22878 -15.79804 -15.41855 -14.98074 -14.85037 -14.26348 -13.95771 -13.67660 -13.30603 -13.25308 -13.14578 -12.88830 -12.85211 -12.56110 -12.42238 -12.08533 -11.93133 -11.87396 -11.67432 -11.53177 -11.40948 -11.08432 -10.91841 -10.78065 -10.47306 -10.38490 -8.85561 -8.02166 -6.25737 1.33759 1.35808 1.44478 2.38345 3.14213 3.44426 3.75959 3.79763 3.83748 4.06194 4.23964 4.43532 4.50015 4.64372 4.72073 4.74516 4.79686 4.80472 4.91527 4.92095 4.92369 4.96728 5.08655 5.11894 5.14791 5.17274 5.26880 5.34557 5.36261 5.43143 5.44749 5.51982 5.60816 5.68968 5.70273 5.81183 6.08911 6.24518 6.43009 6.76152 6.97421 7.45030 8.91405 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025343 B = 0.008382 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.596657 B = 3339.806727 C = 4024.113560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.068 3.932 15 C -0.092 4.092 16 C -0.082 4.082 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.120 4.120 20 C -0.080 4.080 21 C 0.068 3.932 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 6.226 -12.642 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.063 0.937 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.252 5.252 14 C -0.060 4.060 15 C -0.129 4.129 16 C -0.082 4.082 17 C -0.178 4.178 18 C -0.168 4.168 19 C -0.157 4.157 20 C -0.117 4.117 21 C -0.061 4.061 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -4.400 6.100 -12.497 14.586 hybrid contribution 2.225 -0.227 0.910 2.415 sum -2.175 5.873 -11.587 13.171 Atomic orbital electron populations 1.21543 0.96151 0.99584 1.00781 1.21459 0.94576 0.98175 1.00278 1.19046 0.91433 0.91453 0.86905 0.98174 1.21962 0.94157 1.36933 1.05632 0.93668 1.25598 1.01759 0.95038 0.95491 1.69998 1.36280 1.38643 1.10122 0.85787 0.81695 0.77597 0.77942 1.20430 1.20631 1.19907 1.62250 1.58250 1.01819 1.02867 1.21866 0.95579 0.97877 0.90665 1.21516 1.00952 0.94573 0.95902 1.21621 0.96511 0.94839 0.95232 1.22963 0.96107 0.99197 0.99524 1.22795 0.96924 0.96803 1.00243 1.22916 0.97801 0.98493 0.96530 1.21297 1.00438 0.97989 0.92014 1.21831 0.96829 0.89568 0.97873 0.93640 0.94873 0.92465 0.94940 0.92094 0.92944 0.92464 0.97370 0.91428 0.91021 0.90450 0.93783 0.90079 0.90572 0.90749 0.89339 0.90866 0.91114 0.93354 0.97171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.72 71.98 0.70 -4.30 16 2 C -0.11 -5.17 5.03 30.59 0.15 -5.01 16 3 C 0.22 11.16 1.75 44.17 0.08 11.24 16 4 H 0.00 0.02 8.04 -2.39 -0.02 0.00 16 5 C -0.55 -30.26 7.23 25.60 0.19 -30.07 16 6 H 0.05 2.54 5.88 -2.91 -0.02 2.52 16 7 C 0.02 1.16 5.30 84.65 0.45 1.61 16 8 N -0.91 -52.77 11.30 21.45 0.24 -52.52 16 9 Si 0.94 44.39 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.53 -22.52 4.06 -874.89 -3.55 -26.07 16 14 C 0.07 2.69 4.73 86.39 0.41 3.10 16 15 C -0.09 -2.74 5.28 30.59 0.16 -2.58 16 16 C -0.08 -2.22 0.77 -52.00 -0.04 -2.26 16 17 C -0.14 -3.75 6.97 31.00 0.22 -3.53 16 18 C -0.13 -2.67 7.73 31.17 0.24 -2.43 16 19 C -0.12 -2.47 7.25 31.09 0.23 -2.25 16 20 C -0.08 -2.38 5.19 30.60 0.16 -2.22 16 21 C 0.07 2.67 5.04 86.39 0.44 3.11 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 2.18 7.85 -2.39 -0.02 2.16 16 25 H 0.03 1.54 6.11 -2.39 -0.01 1.53 16 26 H 0.06 3.34 5.99 -2.39 -0.01 3.32 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.06 2.34 5.90 -2.39 -0.01 2.33 16 29 H 0.01 0.36 6.60 -2.39 -0.02 0.34 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.89 8.05 -2.39 -0.02 1.88 16 32 H 0.08 2.02 8.03 -2.39 -0.02 2.00 16 33 H 0.04 1.35 7.56 -2.39 -0.02 1.33 16 34 H 0.08 1.60 7.64 -2.38 -0.02 1.58 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.09 1.64 8.10 -2.38 -0.02 1.62 16 38 H 0.07 1.93 7.34 -2.39 -0.02 1.91 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 41 H 0.01 0.44 6.53 -2.39 -0.02 0.43 16 Total: -1.00 -59.03 302.99 3.06 -55.97 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.97 Total: 11.82 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 3.37 Total: -35.61 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -3.31 Total: -78.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.03 3.06 -55.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308742147.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.058 kcal (2) G-P(sol) polarization free energy of solvation -59.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds