Wall clock time and date at job start Sun Mar 29 2020 22:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00133 * 2 1 4 4 H 1.48497 * 109.47333 * 270.00741 * 3 2 1 5 5 H 1.48506 * 109.46935 * 30.00676 * 3 2 1 6 6 H 1.48501 * 109.47200 * 150.00068 * 3 2 1 7 7 C 1.37872 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00134 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46937 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47036 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00307 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.05479 * 34.95288 * 13 12 11 15 15 C 1.53876 * 110.03033 * 273.54408 * 13 12 11 16 16 C 1.54267 * 106.59870 * 240.71359 * 15 13 12 17 17 C 1.54891 * 104.19324 * 336.39035 * 16 15 13 18 18 C 1.54261 * 110.03630 * 156.37460 * 13 12 11 19 19 H 1.08999 * 110.48469 * 24.21566 * 18 13 12 20 20 C 1.53002 * 110.48913 * 261.70457 * 18 13 12 21 21 C 1.52997 * 117.49812 * 128.62159 * 20 18 13 22 22 C 1.52997 * 117.49700 * 59.99468 * 20 18 13 23 23 H 0.96995 * 119.99831 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47016 * 59.99643 * 9 7 2 25 25 H 1.08998 * 109.46961 * 299.99642 * 9 7 2 26 26 H 1.08994 * 109.47400 * 59.99466 * 10 9 7 27 27 H 1.08998 * 109.46864 * 299.99758 * 10 9 7 28 28 H 1.08994 * 109.47628 * 59.99463 * 11 10 9 29 29 H 1.09007 * 109.47055 * 299.99269 * 11 10 9 30 30 H 1.00908 * 110.99787 * 303.94678 * 12 11 10 31 31 H 1.08995 * 110.03160 * 359.97438 * 15 13 12 32 32 H 1.08998 * 110.03319 * 121.42637 * 15 13 12 33 33 H 1.09004 * 110.48597 * 95.06674 * 16 15 13 34 34 H 1.08994 * 110.48679 * 217.71200 * 16 15 13 35 35 H 1.09005 * 110.75269 * 279.62515 * 17 16 15 36 36 H 1.08999 * 110.75712 * 156.25949 * 17 16 15 37 37 H 1.09004 * 115.54904 * 274.32971 * 20 18 13 38 38 H 1.08995 * 117.50417 * 359.97438 * 21 20 18 39 39 H 1.08997 * 117.49336 * 145.02671 * 21 20 18 40 40 H 1.08994 * 117.50253 * 214.98122 * 22 20 18 41 41 H 1.09002 * 117.49970 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5516 -2.6365 -0.0009 12 7 6.0412 -4.0215 -0.0014 13 6 7.5097 -4.0608 -0.0020 14 1 7.9060 -3.2320 0.5846 15 6 8.0384 -3.9852 -1.4451 16 6 8.8342 -5.2836 -1.6914 17 6 9.2487 -5.7497 -0.2737 18 6 8.0027 -5.4023 0.5783 19 1 7.2377 -6.1706 0.4662 20 6 8.3855 -5.2405 2.0508 21 6 7.7797 -6.2274 3.0507 22 6 7.2941 -4.7768 3.0175 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6579 -3.1507 -0.8906 27 1 3.6586 -3.1502 0.8893 28 1 5.9149 -2.1226 0.8889 29 1 5.9149 -2.1229 -0.8911 30 1 5.6658 -4.5381 0.7799 31 1 7.2053 -3.9199 -2.1450 32 1 8.6912 -3.1198 -1.5588 33 1 8.2035 -6.0327 -2.1701 34 1 9.7159 -5.0810 -2.2994 35 1 10.1213 -5.1971 0.0749 36 1 9.4391 -6.8229 -0.2601 37 1 9.4026 -4.8954 2.2369 38 1 7.1081 -6.9916 2.6598 39 1 8.3983 -6.5317 3.8950 40 1 7.5931 -4.1270 3.8399 41 1 6.3033 -4.5874 2.6046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308851889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:58 Heat of formation + Delta-G solvation = -5.699859 kcal Electronic energy + Delta-G solvation = -16913.174700 eV Core-core repulsion = 14406.276762 eV Total energy + Delta-G solvation = -2506.897939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48031 -36.38758 -35.23906 -33.08030 -31.19762 -28.82583 -27.72757 -25.48298 -22.61775 -22.31496 -21.71639 -20.47014 -20.01621 -19.31697 -16.67389 -16.35086 -15.96755 -14.84115 -14.74067 -14.39608 -13.92877 -13.83424 -13.51323 -12.77827 -12.66430 -12.32729 -11.73232 -11.68899 -11.59055 -11.38986 -11.22820 -11.13051 -11.05292 -10.77005 -10.71905 -10.55597 -10.22838 -9.99378 -9.88251 -9.68193 -9.48675 -9.13173 -8.50330 -8.15714 -6.00777 -3.98266 3.32974 3.39936 3.43989 3.60729 4.28362 4.48306 4.49880 4.55245 4.61002 4.83496 4.91514 5.06921 5.28120 5.33277 5.43964 5.46404 5.50631 5.51726 5.63682 5.66230 5.77657 5.80351 5.83483 5.89118 5.96827 5.98185 6.04396 6.17547 6.22614 6.29332 6.33332 6.60682 6.65727 6.96560 7.32067 7.40885 7.49173 7.65946 7.84271 8.58874 9.04938 9.62092 11.12900 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.004637 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.063862 B = 6036.987216 C = 6461.704734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.683 5.683 13 C 0.089 3.911 14 H 0.045 0.955 15 C -0.118 4.118 16 C -0.121 4.121 17 C -0.113 4.113 18 C -0.065 4.065 19 H 0.084 0.916 20 C -0.147 4.147 21 C -0.179 4.179 22 C -0.182 4.182 23 H 0.262 0.738 24 H 0.013 0.987 25 H 0.011 0.989 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.335 0.665 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.260 -11.144 2.126 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.315 5.315 13 C -0.021 4.021 14 H 0.063 0.937 15 C -0.156 4.156 16 C -0.159 4.159 17 C -0.151 4.151 18 C -0.084 4.084 19 H 0.102 0.898 20 C -0.165 4.165 21 C -0.216 4.216 22 C -0.219 4.219 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.044 -11.082 1.446 22.949 hybrid contribution 0.487 1.289 0.990 1.696 sum 20.531 -9.794 2.436 22.877 Atomic orbital electron populations 1.69921 1.06294 1.26799 1.51446 1.25038 0.94723 0.99149 0.94660 0.86770 0.80310 0.83654 0.78485 1.20294 1.21442 1.19116 1.21161 0.89558 0.94440 1.50431 0.91049 1.19542 0.97117 0.92362 0.96057 1.21441 0.91267 0.99568 1.01451 1.22177 0.97407 0.87904 0.99733 1.60765 1.06319 1.14866 1.49538 1.22163 0.88354 0.96026 0.95551 0.93656 1.22217 0.99535 0.96981 0.96907 1.22315 0.99383 0.97673 0.96540 1.22467 0.96958 1.00669 0.95039 1.21783 0.97792 0.97438 0.91379 0.89808 1.22387 0.98004 1.04528 0.91618 1.23001 1.03891 0.93068 1.01599 1.22978 0.99362 0.97451 1.02120 0.92805 0.96908 0.97088 0.92013 0.93170 0.95882 0.91594 0.84544 0.90384 0.92468 0.91524 0.92049 0.91603 0.91653 0.88010 0.88726 0.89090 0.88912 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.02 5.41 -26.73 -0.14 -2.17 16 11 C 0.06 0.95 5.51 -3.82 -0.02 0.93 16 12 N -0.68 -9.76 6.15 -105.55 -0.65 -10.41 16 13 C 0.09 1.08 2.51 -66.60 -0.17 0.92 16 14 H 0.05 0.59 7.53 -51.93 -0.39 0.20 16 15 C -0.12 -1.37 6.48 -25.61 -0.17 -1.53 16 16 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 17 C -0.11 -1.01 6.33 -24.74 -0.16 -1.17 16 18 C -0.07 -0.67 2.47 -88.96 -0.22 -0.89 16 19 H 0.08 0.92 7.78 -51.93 -0.40 0.51 16 20 C -0.15 -1.41 5.09 -90.62 -0.46 -1.87 16 21 C -0.18 -1.60 10.19 -26.73 -0.27 -1.88 16 22 C -0.18 -1.86 9.92 -26.73 -0.27 -2.13 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 29 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 30 H 0.34 4.61 6.59 -39.29 -0.26 4.35 16 31 H 0.08 1.03 7.92 -51.93 -0.41 0.62 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.55 7.93 -51.93 -0.41 0.14 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.92 7.96 -51.93 -0.41 0.51 16 38 H 0.09 0.83 8.07 -51.93 -0.42 0.42 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.08 6.39 -51.93 -0.33 0.75 16 LS Contribution 320.80 15.07 4.83 4.83 Total: -1.00 -30.29 320.80 -9.92 -40.20 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.62 Total: 0.74 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.59 Total: -25.19 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.12 Total: -38.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.29 -9.92 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308851889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.504 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds