Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48498 * 109.46856 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99410 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99820 * 3 2 1 7 7 C 1.37885 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.52940 * 109.41220 * 275.35983 * 13 12 11 15 15 C 1.53180 * 109.45265 * 176.91538 * 14 13 12 16 16 C 1.53152 * 108.88414 * 56.56397 * 15 14 13 17 17 C 1.52838 * 117.67935 * 91.49593 * 16 15 14 18 18 C 1.52803 * 117.75182 * 160.38104 * 16 15 14 19 19 C 1.53156 * 115.00846 * 306.06237 * 16 15 14 20 20 C 1.52944 * 109.41024 * 154.99862 * 13 12 11 21 21 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 27 27 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 28 28 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 29 29 H 1.09002 * 109.41575 * 35.14444 * 13 12 11 30 30 H 1.09002 * 109.47658 * 296.90700 * 14 13 12 31 31 H 1.08992 * 109.47699 * 56.91694 * 14 13 12 32 32 H 1.09005 * 109.57002 * 296.74621 * 15 14 13 33 33 H 1.08998 * 109.57098 * 176.38164 * 15 14 13 34 34 H 1.09000 * 117.51201 * 215.22072 * 17 16 15 35 35 H 1.09007 * 117.50369 * 0.27979 * 17 16 15 36 36 H 1.09005 * 117.50036 * 359.84562 * 18 16 15 37 37 H 1.09000 * 117.50666 * 144.89580 * 18 16 15 38 38 H 1.08999 * 109.56861 * 294.12264 * 19 16 15 39 39 H 1.08993 * 109.57458 * 173.75558 * 19 16 15 40 40 H 1.08994 * 109.47390 * 303.08438 * 20 13 12 41 41 H 1.09010 * 109.47314 * 63.09318 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0412 -4.0216 0.0027 13 6 7.5096 -4.0608 0.0033 14 6 8.0219 -3.9399 -1.4327 15 6 9.5532 -3.9032 -1.4266 16 6 10.0763 -5.1569 -0.7194 17 6 10.3725 -6.3854 -1.5790 18 6 11.5232 -5.5712 -0.9834 19 6 9.5127 -5.3906 0.6853 20 6 7.9826 -5.3810 0.6134 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8752 -0.6804 -0.8889 24 1 3.6585 -3.1503 -0.8893 25 1 3.6578 -3.1506 0.8908 26 1 5.9140 -2.1231 0.8926 27 1 5.9155 -2.1224 -0.8873 28 1 5.6650 -4.5378 0.7838 29 1 7.8940 -3.2300 0.5950 30 1 7.6813 -4.7972 -2.0134 31 1 7.6381 -3.0228 -1.8795 32 1 9.8950 -3.0149 -0.8952 33 1 9.9220 -3.8818 -2.4521 34 1 10.1709 -7.3645 -1.1444 35 1 10.1999 -6.3025 -2.6521 36 1 12.1076 -4.9527 -1.6647 37 1 12.0786 -6.0147 -0.1570 38 1 9.8518 -4.5973 1.3514 39 1 9.8545 -6.3554 1.0601 40 1 7.5710 -5.4856 1.6172 41 1 7.6428 -6.2105 -0.0069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308855522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = -9.795521 kcal Electronic energy + Delta-G solvation = -16698.088215 eV Core-core repulsion = 14191.012676 eV Total energy + Delta-G solvation = -2507.075540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67807 -36.83313 -34.34027 -32.59230 -31.10305 -30.83280 -27.34869 -25.19781 -23.19937 -22.67945 -21.95191 -20.74744 -19.99551 -18.72209 -16.67766 -15.78180 -15.55172 -15.31541 -14.79066 -14.21037 -13.98458 -13.63544 -13.42787 -13.10318 -12.66083 -12.42133 -12.14632 -12.03302 -11.87111 -11.67188 -11.48301 -11.15320 -11.02043 -10.81127 -10.66285 -10.22000 -10.18212 -9.90072 -9.80104 -9.68408 -9.48383 -9.13317 -8.50500 -8.17189 -6.00874 -3.98370 3.32928 3.39867 3.43904 3.53354 4.30512 4.36300 4.48206 4.53626 4.69160 4.77671 4.92292 5.13983 5.20556 5.33112 5.36251 5.38288 5.41276 5.59205 5.61783 5.66902 5.70712 5.73560 5.80999 5.86841 5.89904 5.93318 6.07548 6.14010 6.21073 6.27188 6.38841 6.60954 6.64518 6.96559 7.30171 7.40014 7.48868 7.65635 7.84166 8.58828 9.04933 9.61914 11.12806 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.054065 B = 0.003787 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.774634 B = 7390.996407 C = 7612.228779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.058 3.942 12 N -0.689 5.689 13 C 0.088 3.912 14 C -0.103 4.103 15 C -0.082 4.082 16 C -0.119 4.119 17 C -0.173 4.173 18 C -0.180 4.180 19 C -0.078 4.078 20 C -0.117 4.117 21 H 0.262 0.738 22 H 0.013 0.987 23 H 0.011 0.989 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.338 0.662 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.723 -10.749 -0.442 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.319 5.319 13 C -0.022 4.022 14 C -0.142 4.142 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.210 4.210 18 C -0.217 4.217 19 C -0.116 4.116 20 C -0.155 4.155 21 H 0.072 0.928 22 H 0.031 0.969 23 H 0.029 0.971 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.503 -10.694 -1.118 24.940 hybrid contribution 0.542 1.199 0.880 1.583 sum 23.045 -9.495 -0.238 24.926 Atomic orbital electron populations 1.69917 1.06302 1.26813 1.51430 1.25048 0.94735 0.99179 0.94668 0.86763 0.80309 0.83624 0.78486 1.20293 1.21439 1.19099 1.21168 0.89565 0.94449 1.50439 0.91029 1.19544 0.97118 0.92373 0.96054 1.21443 0.91224 0.99559 1.01514 1.22181 0.97472 0.87799 0.99661 1.60524 1.06477 1.14987 1.49950 1.21456 0.88234 0.96348 0.96127 1.21487 0.93477 1.02572 0.96616 1.21166 0.95941 0.95486 0.99356 1.21503 0.97287 0.96426 0.96686 1.23000 1.02991 0.95636 0.99382 1.22990 0.91183 1.04121 1.03433 1.21105 0.95145 1.01386 0.93972 1.21685 0.95053 0.98159 1.00583 0.92795 0.96897 0.97097 0.91991 0.93090 0.95953 0.91596 0.84344 0.94325 0.91300 0.91824 0.91750 0.91830 0.89016 0.88927 0.89010 0.89071 0.91646 0.91830 0.92076 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 11 C 0.06 0.96 5.48 -3.82 -0.02 0.94 16 12 N -0.69 -9.87 6.31 -106.79 -0.67 -10.54 16 13 C 0.09 1.06 2.41 -67.78 -0.16 0.90 16 14 C -0.10 -1.20 5.44 -26.67 -0.15 -1.35 16 15 C -0.08 -0.79 5.67 -26.56 -0.15 -0.94 16 16 C -0.12 -1.07 1.97 -154.53 -0.31 -1.37 16 17 C -0.17 -1.43 9.93 -26.80 -0.27 -1.70 16 18 C -0.18 -1.41 9.99 -26.82 -0.27 -1.68 16 19 C -0.08 -0.69 5.67 -26.56 -0.15 -0.84 16 20 C -0.12 -1.18 5.23 -26.67 -0.14 -1.32 16 21 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 23 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 27 H 0.07 1.11 7.36 -51.93 -0.38 0.73 16 28 H 0.34 4.57 8.30 -39.29 -0.33 4.24 16 29 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.81 7.36 -51.93 -0.38 0.42 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 40 H 0.06 0.58 8.06 -51.93 -0.42 0.17 16 41 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -30.48 320.47 -9.79 -40.27 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.75 Total: -0.71 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.30 Total: -23.64 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.10 Total: -38.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.48 -9.79 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308855522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.478 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds