Wall clock time and date at job start Sun Mar 29 2020 21:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48498 * 109.46856 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99410 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99820 * 3 2 1 7 7 C 1.37885 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.52940 * 109.41220 * 275.35983 * 13 12 11 15 15 C 1.53180 * 109.45265 * 176.91538 * 14 13 12 16 16 C 1.53152 * 108.88414 * 56.56397 * 15 14 13 17 17 C 1.52838 * 117.67935 * 91.49593 * 16 15 14 18 18 C 1.52803 * 117.75182 * 160.38104 * 16 15 14 19 19 C 1.53156 * 115.00846 * 306.06237 * 16 15 14 20 20 C 1.52944 * 109.41024 * 154.99862 * 13 12 11 21 21 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 27 27 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 28 28 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 29 29 H 1.09002 * 109.41575 * 35.14444 * 13 12 11 30 30 H 1.09002 * 109.47658 * 296.90700 * 14 13 12 31 31 H 1.08992 * 109.47699 * 56.91694 * 14 13 12 32 32 H 1.09005 * 109.57002 * 296.74621 * 15 14 13 33 33 H 1.08998 * 109.57098 * 176.38164 * 15 14 13 34 34 H 1.09000 * 117.51201 * 215.22072 * 17 16 15 35 35 H 1.09007 * 117.50369 * 0.27979 * 17 16 15 36 36 H 1.09005 * 117.50036 * 359.84562 * 18 16 15 37 37 H 1.09000 * 117.50666 * 144.89580 * 18 16 15 38 38 H 1.08999 * 109.56861 * 294.12264 * 19 16 15 39 39 H 1.08993 * 109.57458 * 173.75558 * 19 16 15 40 40 H 1.08994 * 109.47390 * 303.08438 * 20 13 12 41 41 H 1.09010 * 109.47314 * 63.09318 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0412 -4.0216 0.0027 13 6 7.5096 -4.0608 0.0033 14 6 8.0219 -3.9399 -1.4327 15 6 9.5532 -3.9032 -1.4266 16 6 10.0763 -5.1569 -0.7194 17 6 10.3725 -6.3854 -1.5790 18 6 11.5232 -5.5712 -0.9834 19 6 9.5127 -5.3906 0.6853 20 6 7.9826 -5.3810 0.6134 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6801 0.8912 23 1 3.8752 -0.6804 -0.8889 24 1 3.6585 -3.1503 -0.8893 25 1 3.6578 -3.1506 0.8908 26 1 5.9140 -2.1231 0.8926 27 1 5.9155 -2.1224 -0.8873 28 1 5.6650 -4.5378 0.7838 29 1 7.8940 -3.2300 0.5950 30 1 7.6813 -4.7972 -2.0134 31 1 7.6381 -3.0228 -1.8795 32 1 9.8950 -3.0149 -0.8952 33 1 9.9220 -3.8818 -2.4521 34 1 10.1709 -7.3645 -1.1444 35 1 10.1999 -6.3025 -2.6521 36 1 12.1076 -4.9527 -1.6647 37 1 12.0786 -6.0147 -0.1570 38 1 9.8518 -4.5973 1.3514 39 1 9.8545 -6.3554 1.0601 40 1 7.5710 -5.4856 1.6172 41 1 7.6428 -6.2105 -0.0069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308855522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:48 Heat of formation + Delta-G solvation = -27.516690 kcal Electronic energy + Delta-G solvation = -16698.856663 eV Core-core repulsion = 14191.012676 eV Total energy + Delta-G solvation = -2507.843987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45622 -37.91929 -35.91950 -34.35327 -32.42562 -31.88956 -28.84149 -26.49564 -24.23960 -23.50931 -23.18849 -21.92053 -21.46963 -19.50413 -18.88592 -16.90429 -16.48115 -16.22856 -16.19053 -15.69592 -15.41150 -14.79319 -14.50948 -14.30429 -14.15762 -13.60100 -13.46609 -13.17435 -12.93278 -12.75499 -12.61666 -12.46345 -12.30482 -11.94124 -11.87659 -11.76135 -11.46855 -11.43364 -11.24463 -11.01246 -10.80343 -10.76912 -10.44606 -9.32555 -8.29968 -6.34370 1.35547 1.37460 1.49782 2.36102 2.86828 3.05154 3.24681 3.65250 3.81428 3.97457 4.08883 4.11156 4.22536 4.27654 4.40974 4.44213 4.50213 4.59943 4.64934 4.78836 4.83349 4.87816 4.92618 4.93722 5.00248 5.05245 5.08782 5.10308 5.17427 5.26963 5.32385 5.33140 5.45757 5.50526 5.52930 5.61254 5.66042 6.17012 6.29801 6.53298 6.73961 7.30244 8.87185 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.054065 B = 0.003787 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.774634 B = 7390.996407 C = 7612.228779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.072 3.928 12 N -0.694 5.694 13 C 0.089 3.911 14 C -0.101 4.101 15 C -0.077 4.077 16 C -0.131 4.131 17 C -0.176 4.176 18 C -0.171 4.171 19 C -0.075 4.075 20 C -0.111 4.111 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.018 0.982 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.343 0.657 29 H 0.037 0.963 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.496 -10.342 -0.149 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.326 5.326 13 C -0.021 4.021 14 C -0.139 4.139 15 C -0.115 4.115 16 C -0.131 4.131 17 C -0.213 4.213 18 C -0.208 4.208 19 C -0.112 4.112 20 C -0.149 4.149 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.036 0.964 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.162 0.838 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.296 -10.312 -0.825 27.330 hybrid contribution -0.395 0.973 0.772 1.303 sum 24.901 -9.339 -0.054 26.595 Atomic orbital electron populations 1.70075 1.08380 1.28223 1.52730 1.26084 0.95677 1.03732 0.94059 0.85592 0.79441 0.77925 0.79276 1.19072 1.20830 1.16954 1.21528 0.92277 0.93077 1.50378 0.95246 1.19488 0.93787 0.95079 0.96422 1.21269 0.94029 0.96865 1.00697 1.21898 0.94475 0.89393 0.99970 1.60474 1.08189 1.13476 1.50417 1.21524 0.86529 0.97481 0.96541 1.21450 0.94979 1.01423 0.96066 1.21112 0.94349 0.96108 0.99936 1.21499 0.98467 0.96347 0.96791 1.23052 1.03266 0.95636 0.99315 1.23051 0.90629 1.03541 1.03571 1.21088 0.93948 1.02155 0.94057 1.21632 0.96129 0.96614 1.00550 0.92459 0.96215 0.96381 0.93374 0.93451 0.95335 0.91567 0.83798 0.94539 0.92163 0.93201 0.91681 0.91265 0.88543 0.89038 0.88524 0.88120 0.91465 0.90600 0.91473 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.95 45.11 27.47 68.60 1.88 47.00 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.53 -31.95 9.66 25.60 0.25 -31.70 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.67 5.41 30.59 0.17 -3.50 16 11 C 0.07 2.31 5.48 86.30 0.47 2.78 16 12 N -0.69 -19.09 6.31 -491.77 -3.10 -22.19 16 13 C 0.09 2.00 2.41 44.88 0.11 2.11 16 14 C -0.10 -2.23 5.44 30.63 0.17 -2.07 16 15 C -0.08 -1.37 5.67 30.71 0.17 -1.19 16 16 C -0.13 -2.06 1.97 -52.20 -0.10 -2.16 16 17 C -0.18 -2.54 9.93 30.55 0.30 -2.24 16 18 C -0.17 -2.24 9.99 30.54 0.31 -1.94 16 19 C -0.07 -1.15 5.67 30.71 0.17 -0.97 16 20 C -0.11 -2.04 5.23 30.64 0.16 -1.88 16 21 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 22 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 23 H 0.02 0.84 7.57 -2.38 -0.02 0.82 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.03 0.89 8.05 -2.39 -0.02 0.87 16 27 H 0.07 2.14 7.36 -2.38 -0.02 2.12 16 28 H 0.34 8.85 8.30 -89.69 -0.74 8.10 16 29 H 0.04 0.86 7.80 -2.39 -0.02 0.84 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.22 7.36 -2.39 -0.02 1.20 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 40 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 41 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -65.75 320.47 2.01 -63.74 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.17 Total: 15.00 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 2.76 Total: -42.59 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.80 Total: -83.14 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 47.00 kcal Total: -65.75 2.01 -63.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308855522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.223 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds