Wall clock time and date at job start Sun Mar 29 2020 22:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47445 * 325.00257 * 12 11 10 14 14 C 1.53006 * 109.46920 * 84.99965 * 12 11 10 15 15 C 1.52998 * 109.46761 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47137 * 299.99927 * 15 14 12 17 17 C 1.52997 * 109.47199 * 60.00229 * 16 15 14 18 18 H 1.08997 * 109.46732 * 59.99929 * 17 16 15 19 19 C 1.52996 * 109.47337 * 179.97438 * 17 16 15 20 20 C 1.53001 * 117.49808 * 248.62676 * 19 17 16 21 21 C 1.52994 * 117.50351 * 179.97438 * 19 17 16 22 22 C 1.52998 * 109.46889 * 299.99922 * 17 16 15 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.00899 * 110.99910 * 303.95546 * 11 10 9 29 29 H 1.08998 * 109.47145 * 299.99617 * 14 12 11 30 30 H 1.08997 * 109.46824 * 59.99911 * 14 12 11 31 31 H 1.08997 * 109.47439 * 60.00392 * 15 14 12 32 32 H 1.09000 * 109.47297 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.46649 * 180.02562 * 16 15 14 34 34 H 1.08997 * 109.47125 * 299.99773 * 16 15 14 35 35 H 1.09010 * 115.54730 * 34.32788 * 19 17 16 36 36 H 1.09000 * 117.50137 * 359.97438 * 20 19 17 37 37 H 1.09008 * 117.50014 * 145.02074 * 20 19 17 38 38 H 1.08996 * 117.50359 * 214.97998 * 21 19 17 39 39 H 1.09005 * 117.49712 * 0.02562 * 21 19 17 40 40 H 1.08997 * 109.47439 * 299.99574 * 22 17 16 41 41 H 1.08997 * 109.46655 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 1 3.3187 -5.8284 -0.5882 14 6 2.8530 -6.3931 1.4379 15 6 3.8154 -7.5825 1.4385 16 6 3.1202 -8.8014 0.8285 17 6 2.7026 -8.4841 -0.6088 18 1 3.5859 -8.2371 -1.1976 19 6 2.0080 -9.7031 -1.2190 20 6 2.7377 -10.4436 -2.3415 21 6 1.5117 -9.5850 -2.6614 22 6 1.7402 -7.2947 -0.6094 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 0.8742 -4.9845 0.7810 29 1 3.3479 -5.5246 1.8726 30 1 1.9697 -6.6405 2.0266 31 1 4.6987 -7.3355 0.8497 32 1 4.1126 -7.8089 2.4625 33 1 3.8058 -9.6488 0.8294 34 1 2.2369 -9.0484 1.4174 35 1 1.4104 -10.2983 -0.5284 36 1 3.7124 -10.0620 -2.6456 37 1 2.6203 -11.5263 -2.3898 38 1 0.5882 -10.1030 -2.9199 39 1 1.6804 -8.6389 -3.1758 40 1 0.8569 -7.5417 -0.0206 41 1 1.4424 -7.0690 -1.6333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308901825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:48 Heat of formation + Delta-G solvation = -35.558144 kcal Electronic energy + Delta-G solvation = -16884.236592 eV Core-core repulsion = 14376.043901 eV Total energy + Delta-G solvation = -2508.192691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42944 -38.07267 -36.42172 -34.91807 -31.81127 -31.36693 -28.84781 -25.71477 -24.50156 -23.39024 -22.88784 -22.47475 -21.15112 -20.67446 -18.91495 -17.02826 -16.57376 -15.91412 -15.78778 -15.64651 -15.34407 -14.96986 -14.87628 -14.46801 -13.92239 -13.71559 -13.65410 -13.15584 -12.76694 -12.69171 -12.39910 -12.24894 -12.07129 -11.99703 -11.96112 -11.80749 -11.63299 -11.44310 -11.26015 -10.89716 -10.79843 -10.58656 -10.56074 -9.29794 -8.71949 -6.42444 1.51675 1.60740 1.80298 2.55454 2.89108 3.13953 3.27348 3.58976 3.80430 3.94781 4.07567 4.10330 4.12504 4.27215 4.33162 4.44722 4.46583 4.55134 4.61309 4.63875 4.69289 4.74097 4.82656 4.86682 4.99866 5.05142 5.08133 5.15980 5.20990 5.25445 5.29106 5.31949 5.35747 5.40658 5.47496 5.57566 5.90625 6.14097 6.19519 6.42716 6.57717 7.40501 8.69294 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.040352 B = 0.004118 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.735253 B = 6798.343401 C = 7146.804011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.039 4.039 3 Si 1.120 2.880 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.623 4.623 8 H 0.051 0.949 9 C 0.016 3.984 10 C 0.093 3.907 11 N -0.694 5.694 12 C 0.087 3.913 13 H 0.061 0.939 14 C -0.144 4.144 15 C -0.111 4.111 16 C -0.104 4.104 17 C -0.050 4.050 18 H 0.064 0.936 19 C -0.147 4.147 20 C -0.173 4.173 21 C -0.190 4.190 22 C -0.088 4.088 23 H 0.255 0.745 24 H -0.012 1.012 25 H -0.010 1.010 26 H 0.052 0.948 27 H 0.018 0.982 28 H 0.337 0.663 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -21.490 0.177 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.661 4.661 8 H 0.069 0.931 9 C -0.022 4.022 10 C -0.036 4.036 11 N -0.323 5.323 12 C -0.023 4.023 13 H 0.080 0.920 14 C -0.184 4.184 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.069 4.069 18 H 0.083 0.917 19 C -0.166 4.166 20 C -0.210 4.210 21 C -0.227 4.227 22 C -0.126 4.126 23 H 0.064 0.936 24 H 0.006 0.994 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.155 0.845 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.040 -19.865 -0.520 21.082 hybrid contribution 0.092 -1.362 0.822 1.594 sum 7.133 -21.227 0.302 22.396 Atomic orbital electron populations 1.70910 1.07970 1.29874 1.48547 1.27520 0.96606 1.06958 0.92532 0.82909 0.74108 0.70825 0.78095 1.20726 1.19252 1.19346 1.22440 0.94694 0.93396 1.55551 0.93099 1.19101 0.95014 0.93812 0.94248 1.21615 0.95243 0.88296 0.98420 1.60632 1.20126 1.01689 1.49898 1.21656 0.94402 0.90593 0.95657 0.92018 1.22218 1.00282 0.98752 0.97113 1.21454 0.97697 0.94250 1.01488 1.21519 1.00653 0.97434 0.94557 1.20681 0.97011 0.92511 0.96715 0.91730 1.22317 1.03524 0.99384 0.91330 1.23079 0.96462 0.98953 1.02530 1.22972 0.98957 1.01923 0.98818 1.21420 0.98142 0.92625 1.00445 0.93557 0.99361 0.99160 0.92907 0.96403 0.84504 0.93676 0.91651 0.92128 0.90880 0.90502 0.91628 0.87273 0.88876 0.87752 0.88327 0.89786 0.92149 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.65 21.45 0.29 -59.48 16 2 C -0.04 -2.32 5.46 84.65 0.46 -1.85 16 3 Si 1.12 51.18 29.90 68.60 2.05 53.23 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.62 -36.92 9.11 25.60 0.23 -36.69 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 9 C 0.02 0.86 4.54 29.85 0.14 1.00 16 10 C 0.09 4.12 5.42 86.30 0.47 4.59 16 11 N -0.69 -25.51 6.25 -491.57 -3.07 -28.58 16 12 C 0.09 2.51 2.47 44.92 0.11 2.62 16 13 H 0.06 1.91 7.80 -2.39 -0.02 1.89 16 14 C -0.14 -3.63 5.17 30.60 0.16 -3.47 16 15 C -0.11 -2.15 5.92 30.60 0.18 -1.97 16 16 C -0.10 -1.77 5.19 30.59 0.16 -1.61 16 17 C -0.05 -0.97 2.34 -10.80 -0.03 -1.00 16 18 H 0.06 1.31 7.90 -2.39 -0.02 1.29 16 19 C -0.15 -2.51 5.15 -10.80 -0.06 -2.57 16 20 C -0.17 -2.63 10.18 30.61 0.31 -2.31 16 21 C -0.19 -3.36 9.74 30.61 0.30 -3.06 16 22 C -0.09 -2.18 4.65 30.59 0.14 -2.04 16 23 H 0.26 16.57 7.22 -92.71 -0.67 15.90 16 24 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 25 H -0.01 -0.59 8.01 -2.38 -0.02 -0.61 16 26 H 0.05 2.37 8.06 -2.39 -0.02 2.35 16 27 H 0.02 0.78 7.44 -2.39 -0.02 0.76 16 28 H 0.34 12.07 8.47 -89.69 -0.76 11.31 16 29 H 0.04 1.27 7.45 -2.39 -0.02 1.26 16 30 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.70 8.11 -2.38 -0.02 1.68 16 36 H 0.09 1.40 8.05 -2.39 -0.02 1.38 16 37 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.69 7.61 -2.38 -0.02 1.67 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.49 7.29 -2.39 -0.02 1.47 16 Total: -1.00 -65.67 320.73 2.16 -63.51 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.31 Total: 19.67 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 2.58 Total: -48.35 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.78 Total: -88.06 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -65.67 2.16 -63.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308901825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.954 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds