Wall clock time and date at job start Sun Mar 29 2020 22:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00129 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46963 * 35.00108 * 12 11 10 14 14 C 1.53001 * 109.46948 * 275.00184 * 12 11 10 15 15 C 1.53002 * 109.46929 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47195 * 60.00263 * 15 14 12 17 17 C 1.53004 * 109.46915 * 300.00082 * 16 15 14 18 18 H 1.09002 * 109.46652 * 299.99425 * 17 16 15 19 19 C 1.53000 * 109.47234 * 180.02562 * 17 16 15 20 20 C 1.52996 * 117.50100 * 128.74447 * 19 17 16 21 21 C 1.53000 * 117.50207 * 60.08103 * 19 17 16 22 22 C 1.52992 * 109.47243 * 59.99818 * 17 16 15 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 27 27 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 28 28 H 1.00897 * 111.00435 * 303.95583 * 11 10 9 29 29 H 1.08996 * 109.47227 * 299.99762 * 14 12 11 30 30 H 1.09001 * 109.47130 * 59.99981 * 14 12 11 31 31 H 1.09008 * 109.47194 * 180.02562 * 15 14 12 32 32 H 1.08996 * 109.47307 * 300.00123 * 15 14 12 33 33 H 1.09008 * 109.47387 * 59.99432 * 16 15 14 34 34 H 1.09002 * 109.47530 * 179.97438 * 16 15 14 35 35 H 1.09007 * 115.54865 * 274.41743 * 19 17 16 36 36 H 1.08997 * 117.49723 * 359.97438 * 20 19 17 37 37 H 1.09004 * 117.50015 * 145.02014 * 20 19 17 38 38 H 1.08994 * 117.50125 * 214.98359 * 21 19 17 39 39 H 1.09002 * 117.49605 * 0.02562 * 21 19 17 40 40 H 1.09008 * 109.47181 * 180.02562 * 22 17 16 41 41 H 1.08996 * 109.47202 * 60.00086 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 7 1.5108 -4.9342 -0.0116 12 6 2.4353 -6.0759 -0.0182 13 1 3.3207 -5.8297 0.5679 14 6 2.8476 -6.3899 -1.4577 15 6 3.8109 -7.5786 -1.4645 16 6 3.1191 -8.7992 -0.8544 17 6 2.7067 -8.4851 0.5852 18 1 3.5922 -8.2386 1.1712 19 6 2.0155 -9.7059 1.1957 20 6 2.5239 -10.2016 2.5509 21 6 2.8204 -11.0042 1.2816 22 6 1.7435 -7.2965 0.5920 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.8685 -3.6024 -0.9044 27 1 2.8753 -3.6063 0.8755 28 1 0.8776 -4.9859 0.7722 29 1 1.9621 -6.6361 -2.0438 30 1 3.3408 -5.5205 -1.8923 31 1 4.1050 -7.8021 -2.4901 32 1 4.6963 -7.3321 -0.8786 33 1 2.2336 -9.0457 -1.4403 34 1 3.8052 -9.6462 -0.8596 35 1 0.9466 -9.7886 0.9982 36 1 3.3512 -9.6582 3.0073 37 1 1.7897 -10.6107 3.2449 38 1 2.2812 -11.9409 1.1411 39 1 3.8427 -10.9885 0.9036 40 1 1.4500 -7.0724 1.6176 41 1 0.8581 -7.5430 0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308901826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:50 Heat of formation + Delta-G solvation = -17.947596 kcal Electronic energy + Delta-G solvation = -16840.582676 eV Core-core repulsion = 14333.153636 eV Total energy + Delta-G solvation = -2507.429040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43984 -37.00323 -34.86269 -33.02148 -30.70558 -29.98981 -27.25740 -23.95414 -23.21574 -22.71918 -21.78743 -20.85597 -19.89342 -19.67727 -16.71211 -16.06100 -15.31032 -14.86910 -14.50556 -14.31329 -14.13170 -13.69061 -13.35121 -13.10115 -12.60319 -12.40234 -11.87445 -11.83507 -11.70949 -11.36179 -11.27872 -11.06933 -10.84280 -10.63878 -10.61129 -10.45624 -10.15852 -10.09785 -9.95559 -9.82436 -9.61193 -8.53955 -8.29333 -7.85203 -6.32908 -4.01486 3.45649 3.48086 3.59441 3.66773 4.29547 4.52932 4.61329 4.66953 4.78433 4.93921 4.96007 5.05150 5.24895 5.40597 5.43991 5.44994 5.47037 5.54410 5.56693 5.62838 5.67610 5.73846 5.90231 5.90921 6.01837 6.11917 6.14926 6.25722 6.28343 6.28946 6.37973 6.40883 6.58071 6.88628 7.32953 7.54649 7.75125 7.93305 8.28731 8.49984 8.92451 9.71036 11.08319 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047015 B = 0.003944 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.407038 B = 7097.512914 C = 7351.424712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.074 3.926 11 N -0.690 5.690 12 C 0.087 3.913 13 H 0.036 0.964 14 C -0.107 4.107 15 C -0.119 4.119 16 C -0.109 4.109 17 C -0.053 4.053 18 H 0.067 0.933 19 C -0.144 4.144 20 C -0.182 4.182 21 C -0.181 4.181 22 C -0.111 4.111 23 H 0.270 0.730 24 H 0.004 0.996 25 H 0.016 0.984 26 H 0.059 0.941 27 H 0.015 0.985 28 H 0.335 0.665 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -20.707 1.307 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.054 4.054 11 N -0.321 5.321 12 C -0.023 4.023 13 H 0.054 0.946 14 C -0.145 4.145 15 C -0.158 4.158 16 C -0.147 4.147 17 C -0.072 4.072 18 H 0.086 0.914 19 C -0.162 4.162 20 C -0.219 4.219 21 C -0.218 4.218 22 C -0.148 4.148 23 H 0.080 0.920 24 H 0.022 0.978 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.152 0.848 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.833 -19.048 0.624 19.931 hybrid contribution 0.566 -1.675 0.981 2.022 sum 6.398 -20.723 1.606 21.748 Atomic orbital electron populations 1.70767 1.06864 1.30696 1.46588 1.25844 0.96570 1.02676 0.93819 0.83542 0.74870 0.75346 0.76468 1.20748 1.21522 1.21434 1.22005 0.94216 0.92068 1.55882 0.93468 1.19199 0.94701 0.92291 0.96341 1.22026 0.96560 0.88119 0.98706 1.60604 1.20082 1.02017 1.49403 1.21473 0.94338 0.90547 0.95901 0.94612 1.21518 0.99051 0.97218 0.96699 1.21554 0.98464 0.95265 1.00474 1.21548 1.00333 0.97464 0.95325 1.20712 0.97683 0.92734 0.96083 0.91429 1.22368 0.99254 0.94787 0.99796 1.23019 1.03557 1.04347 0.91012 1.22930 1.01351 0.95330 1.02233 1.21713 0.98588 0.93952 1.00592 0.92003 0.97812 0.96563 0.92246 0.96675 0.84760 0.91463 0.92043 0.92032 0.92397 0.91842 0.92302 0.87887 0.88920 0.89058 0.89083 0.88889 0.92209 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.67 13.65 55.43 0.76 -27.92 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.73 9.11 -34.44 -0.31 -18.05 16 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.32 4.54 -27.88 -0.13 0.20 16 10 C 0.07 1.63 5.42 -3.83 -0.02 1.61 16 11 N -0.69 -12.63 6.31 -106.73 -0.67 -13.30 16 12 C 0.09 1.30 2.49 -67.71 -0.17 1.14 16 13 H 0.04 0.57 7.80 -51.93 -0.40 0.16 16 14 C -0.11 -1.49 5.43 -26.73 -0.15 -1.64 16 15 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 16 C -0.11 -1.09 5.05 -26.73 -0.13 -1.23 16 17 C -0.05 -0.55 2.34 -90.62 -0.21 -0.77 16 18 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 19 C -0.14 -1.34 5.15 -90.62 -0.47 -1.81 16 20 C -0.18 -1.57 10.18 -26.69 -0.27 -1.84 16 21 C -0.18 -1.48 9.74 -26.69 -0.26 -1.74 16 22 C -0.11 -1.36 4.46 -26.74 -0.12 -1.48 16 23 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 24 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 25 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 26 H 0.06 1.32 7.44 -51.93 -0.39 0.94 16 27 H 0.01 0.33 8.05 -51.93 -0.42 -0.09 16 28 H 0.33 5.91 8.35 -39.29 -0.33 5.58 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.95 7.45 -51.93 -0.39 0.56 16 31 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.06 0.53 7.29 -51.93 -0.38 0.15 16 35 H 0.10 0.96 8.11 -51.92 -0.42 0.54 16 36 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.74 7.61 -51.93 -0.40 0.34 16 40 H 0.06 0.74 8.12 -51.92 -0.42 0.31 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -30.68 320.63 -10.32 -41.00 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.66 Total: 1.42 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.49 Total: -26.76 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.08 Total: -41.22 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.68 -10.32 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308901826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.057 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds