Wall clock time and date at job start Sun Mar 29 2020 22:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00129 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46963 * 35.00108 * 12 11 10 14 14 C 1.53001 * 109.46948 * 275.00184 * 12 11 10 15 15 C 1.53002 * 109.46929 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47195 * 60.00263 * 15 14 12 17 17 C 1.53004 * 109.46915 * 300.00082 * 16 15 14 18 18 H 1.09002 * 109.46652 * 299.99425 * 17 16 15 19 19 C 1.53000 * 109.47234 * 180.02562 * 17 16 15 20 20 C 1.52996 * 117.50100 * 128.74447 * 19 17 16 21 21 C 1.53000 * 117.50207 * 60.08103 * 19 17 16 22 22 C 1.52992 * 109.47243 * 59.99818 * 17 16 15 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08999 * 109.46737 * 299.99057 * 10 9 7 27 27 H 1.08993 * 109.47411 * 59.99528 * 10 9 7 28 28 H 1.00897 * 111.00435 * 303.95583 * 11 10 9 29 29 H 1.08996 * 109.47227 * 299.99762 * 14 12 11 30 30 H 1.09001 * 109.47130 * 59.99981 * 14 12 11 31 31 H 1.09008 * 109.47194 * 180.02562 * 15 14 12 32 32 H 1.08996 * 109.47307 * 300.00123 * 15 14 12 33 33 H 1.09008 * 109.47387 * 59.99432 * 16 15 14 34 34 H 1.09002 * 109.47530 * 179.97438 * 16 15 14 35 35 H 1.09007 * 115.54865 * 274.41743 * 19 17 16 36 36 H 1.08997 * 117.49723 * 359.97438 * 20 19 17 37 37 H 1.09004 * 117.50015 * 145.02014 * 20 19 17 38 38 H 1.08994 * 117.50125 * 214.98359 * 21 19 17 39 39 H 1.09002 * 117.49605 * 0.02562 * 21 19 17 40 40 H 1.09008 * 109.47181 * 180.02562 * 22 17 16 41 41 H 1.08996 * 109.47202 * 60.00086 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 7 1.5108 -4.9342 -0.0116 12 6 2.4353 -6.0759 -0.0182 13 1 3.3207 -5.8297 0.5679 14 6 2.8476 -6.3899 -1.4577 15 6 3.8109 -7.5786 -1.4645 16 6 3.1191 -8.7992 -0.8544 17 6 2.7067 -8.4851 0.5852 18 1 3.5922 -8.2386 1.1712 19 6 2.0155 -9.7059 1.1957 20 6 2.5239 -10.2016 2.5509 21 6 2.8204 -11.0042 1.2816 22 6 1.7435 -7.2965 0.5920 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.8685 -3.6024 -0.9044 27 1 2.8753 -3.6063 0.8755 28 1 0.8776 -4.9859 0.7722 29 1 1.9621 -6.6361 -2.0438 30 1 3.3408 -5.5205 -1.8923 31 1 4.1050 -7.8021 -2.4901 32 1 4.6963 -7.3321 -0.8786 33 1 2.2336 -9.0457 -1.4403 34 1 3.8052 -9.6462 -0.8596 35 1 0.9466 -9.7886 0.9982 36 1 3.3512 -9.6582 3.0073 37 1 1.7897 -10.6107 3.2449 38 1 2.2812 -11.9409 1.1411 39 1 3.8427 -10.9885 0.9036 40 1 1.4500 -7.0724 1.6176 41 1 0.8581 -7.5430 0.0060 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308901826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:50 Heat of formation + Delta-G solvation = -35.199462 kcal Electronic energy + Delta-G solvation = -16841.330773 eV Core-core repulsion = 14333.153636 eV Total energy + Delta-G solvation = -2508.177137 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40896 -38.06555 -36.42114 -34.90862 -31.90151 -31.38893 -28.85402 -25.79508 -24.40123 -23.53402 -22.73543 -22.65672 -20.85478 -20.67265 -18.91404 -16.97016 -16.69741 -16.06858 -15.73201 -15.64453 -15.38449 -15.12143 -14.91292 -14.35618 -14.22121 -13.70661 -13.20073 -13.13581 -12.86558 -12.70438 -12.42133 -12.38128 -12.05999 -12.01815 -11.94905 -11.75753 -11.50451 -11.40357 -11.28877 -10.96730 -10.68600 -10.60711 -10.56766 -9.39282 -8.72305 -6.42802 1.51550 1.60649 1.80266 2.55271 2.91050 3.13542 3.16552 3.59107 3.82453 3.96309 4.06624 4.10285 4.14085 4.28711 4.33929 4.38596 4.50177 4.50933 4.59891 4.62346 4.67830 4.75489 4.81925 4.85141 4.99502 5.06315 5.11518 5.18344 5.23532 5.24737 5.28465 5.33244 5.34233 5.40030 5.41237 5.58093 5.90092 6.13613 6.18631 6.42471 6.57283 7.40108 8.69009 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047015 B = 0.003944 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.407038 B = 7097.512914 C = 7351.424712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.039 4.039 3 Si 1.121 2.879 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.623 4.623 8 H 0.050 0.950 9 C 0.016 3.984 10 C 0.093 3.907 11 N -0.694 5.694 12 C 0.087 3.913 13 H 0.030 0.970 14 C -0.105 4.105 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.047 4.047 18 H 0.065 0.935 19 C -0.153 4.153 20 C -0.186 4.186 21 C -0.171 4.171 22 C -0.103 4.103 23 H 0.255 0.745 24 H -0.012 1.012 25 H -0.009 1.009 26 H 0.055 0.945 27 H 0.014 0.986 28 H 0.338 0.662 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -21.905 1.430 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.661 4.661 8 H 0.069 0.931 9 C -0.021 4.021 10 C -0.036 4.036 11 N -0.325 5.325 12 C -0.023 4.023 13 H 0.048 0.952 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.066 4.066 18 H 0.083 0.917 19 C -0.172 4.172 20 C -0.223 4.223 21 C -0.208 4.208 22 C -0.141 4.141 23 H 0.065 0.935 24 H 0.006 0.994 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.259 -20.291 0.748 21.563 hybrid contribution 0.092 -1.354 0.943 1.652 sum 7.351 -21.645 1.691 22.921 Atomic orbital electron populations 1.70908 1.07960 1.29892 1.48526 1.27527 0.96610 1.06960 0.92517 0.82909 0.74108 0.70809 0.78102 1.20699 1.19266 1.19323 1.22440 0.94692 0.93410 1.55590 0.93127 1.19095 0.94987 0.93749 0.94286 1.21637 0.95212 0.88337 0.98385 1.60549 1.20613 1.01654 1.49717 1.21594 0.93651 0.90194 0.96844 0.95167 1.21506 0.99393 0.97852 0.95607 1.21519 0.97715 0.94371 1.01558 1.21529 1.00625 0.97354 0.94713 1.20635 0.97025 0.92323 0.96614 0.91666 1.22287 0.99308 0.94992 1.00579 1.23086 1.03660 1.04463 0.91100 1.23005 1.01456 0.95043 1.01298 1.21640 0.98776 0.93526 1.00120 0.93538 0.99362 0.99051 0.92691 0.96762 0.84432 0.92054 0.94032 0.90732 0.92198 0.91806 0.90489 0.87973 0.89083 0.88429 0.88017 0.88354 0.92302 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.80 13.65 21.45 0.29 -59.51 16 2 C -0.04 -2.32 5.46 84.65 0.46 -1.86 16 3 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.62 -37.05 9.11 25.60 0.23 -36.82 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.02 0.89 4.54 29.85 0.14 1.03 16 10 C 0.09 4.16 5.42 86.30 0.47 4.63 16 11 N -0.69 -25.71 6.31 -491.60 -3.10 -28.81 16 12 C 0.09 2.55 2.49 44.91 0.11 2.66 16 13 H 0.03 0.94 7.80 -2.39 -0.02 0.92 16 14 C -0.11 -2.89 5.43 30.60 0.17 -2.73 16 15 C -0.11 -2.33 5.92 30.59 0.18 -2.15 16 16 C -0.10 -1.85 5.05 30.59 0.15 -1.69 16 17 C -0.05 -0.89 2.34 -10.79 -0.03 -0.92 16 18 H 0.06 1.29 7.90 -2.39 -0.02 1.27 16 19 C -0.15 -2.54 5.15 -10.79 -0.06 -2.59 16 20 C -0.19 -2.82 10.18 30.62 0.31 -2.51 16 21 C -0.17 -2.33 9.74 30.62 0.30 -2.03 16 22 C -0.10 -2.43 4.46 30.59 0.14 -2.29 16 23 H 0.26 16.58 7.22 -92.71 -0.67 15.91 16 24 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 25 H -0.01 -0.53 8.00 -2.39 -0.02 -0.55 16 26 H 0.05 2.49 7.44 -2.39 -0.02 2.47 16 27 H 0.01 0.63 8.05 -2.39 -0.02 0.61 16 28 H 0.34 12.09 8.35 -89.70 -0.75 11.35 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.29 7.45 -2.39 -0.02 1.27 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.08 1.12 7.29 -2.39 -0.02 1.11 16 35 H 0.10 1.72 8.11 -2.38 -0.02 1.70 16 36 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 37 H 0.10 1.34 8.14 -2.38 -0.02 1.33 16 38 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.25 7.61 -2.39 -0.02 1.23 16 40 H 0.06 1.40 8.12 -2.38 -0.02 1.38 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -65.98 320.63 2.14 -63.84 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.32 Total: 18.46 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 2.58 Total: -47.27 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -2.81 Total: -88.32 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -65.98 2.14 -63.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308901826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.642 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds