Wall clock time and date at job start Sun Mar 29 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47465 * 324.99806 * 12 11 10 14 14 C 1.53000 * 109.47140 * 84.99977 * 12 11 10 15 15 C 1.53008 * 109.47138 * 59.99694 * 14 12 11 16 16 C 1.53006 * 109.46916 * 59.99916 * 15 14 12 17 17 C 1.53000 * 109.47286 * 299.99993 * 16 15 14 18 18 H 1.08997 * 109.47119 * 300.00536 * 17 16 15 19 19 C 1.52993 * 109.47107 * 180.02562 * 17 16 15 20 20 C 1.53002 * 117.50056 * 128.74689 * 19 17 16 21 21 C 1.52999 * 117.49852 * 60.08540 * 19 17 16 22 22 C 1.53002 * 109.46954 * 204.99693 * 12 11 10 23 23 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 29 29 H 1.08997 * 109.47119 * 179.97438 * 14 12 11 30 30 H 1.08994 * 109.46950 * 300.00235 * 14 12 11 31 31 H 1.08997 * 109.46721 * 179.97438 * 15 14 12 32 32 H 1.08993 * 109.47196 * 300.00100 * 15 14 12 33 33 H 1.09002 * 109.46863 * 59.99995 * 16 15 14 34 34 H 1.08994 * 109.46862 * 180.02562 * 16 15 14 35 35 H 1.09001 * 115.55151 * 274.41687 * 19 17 16 36 36 H 1.08999 * 117.49321 * 0.02562 * 20 19 17 37 37 H 1.09000 * 117.49809 * 145.02058 * 20 19 17 38 38 H 1.09002 * 117.49822 * 214.97898 * 21 19 17 39 39 H 1.08998 * 117.49850 * 359.97438 * 21 19 17 40 40 H 1.09006 * 109.47141 * 59.99923 * 22 12 11 41 41 H 1.08993 * 109.47094 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4907 -2.6365 0.0022 12 6 6.0171 -4.0079 0.0027 13 1 5.3610 -4.6487 0.5917 14 6 6.0836 -4.5292 -1.4342 15 6 7.0047 -3.6296 -2.2610 16 6 8.4075 -3.6371 -1.6502 17 6 8.3410 -3.1158 -0.2133 18 1 7.9502 -2.0983 -0.2136 19 6 9.7438 -3.1228 0.3972 20 6 10.2345 -1.8314 1.0549 21 6 10.8171 -2.2756 -0.2891 22 6 7.4199 -4.0154 0.6134 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1502 -0.8892 27 1 3.6580 -3.1505 0.8908 28 1 5.8529 -2.1100 -0.7787 29 1 6.4747 -5.5466 -1.4338 30 1 5.0843 -4.5237 -1.8693 31 1 7.0524 -4.0013 -3.2845 32 1 6.6141 -2.6121 -2.2614 33 1 8.7981 -4.6547 -1.6498 34 1 9.0635 -2.9959 -2.2389 35 1 10.0571 -4.0660 0.8448 36 1 9.5576 -0.9770 1.0530 37 1 10.8708 -1.9251 1.9349 38 1 11.8366 -2.6612 -0.2928 39 1 10.5239 -1.7136 -1.1758 40 1 7.3726 -3.6440 1.6371 41 1 7.8107 -5.0329 0.6134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308901827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:52 Heat of formation + Delta-G solvation = -6.657536 kcal Electronic energy + Delta-G solvation = -17240.513459 eV Core-core repulsion = 14733.573992 eV Total energy + Delta-G solvation = -2506.939467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60454 -37.02234 -34.43260 -32.56666 -30.70422 -30.33020 -27.99911 -24.02604 -23.27961 -22.84648 -21.86011 -20.49506 -20.04273 -18.87529 -16.73136 -16.11829 -15.38625 -14.89084 -14.44135 -14.39393 -13.93878 -13.66620 -13.41371 -12.92246 -12.54854 -12.43108 -11.98796 -11.80447 -11.67227 -11.56287 -11.39967 -11.10376 -10.96835 -10.63985 -10.50520 -10.33998 -10.04528 -9.90723 -9.82380 -9.70083 -9.55401 -9.19901 -8.51428 -7.81232 -6.02256 -4.00270 3.33415 3.40917 3.47254 3.73665 4.48356 4.51107 4.66557 4.77278 4.85748 4.93989 5.01510 5.06097 5.32451 5.33415 5.43193 5.51245 5.54820 5.60148 5.64976 5.70407 5.74515 5.80710 5.93547 6.05079 6.05385 6.09876 6.19817 6.23000 6.30455 6.32319 6.39411 6.53160 6.56522 6.82525 7.20312 7.42556 7.69116 7.82260 7.98701 8.56060 9.02144 9.60485 11.11205 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028234 B = 0.005393 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.466909 B = 5190.476651 C = 5714.719319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.688 5.688 12 C 0.085 3.915 13 H 0.074 0.926 14 C -0.150 4.150 15 C -0.122 4.122 16 C -0.109 4.109 17 C -0.056 4.056 18 H 0.079 0.921 19 C -0.143 4.143 20 C -0.180 4.180 21 C -0.184 4.184 22 C -0.095 4.095 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.007 0.993 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.334 0.666 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.361 -7.589 -1.808 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.320 5.320 12 C -0.025 4.025 13 H 0.092 0.908 14 C -0.189 4.189 15 C -0.159 4.159 16 C -0.146 4.146 17 C -0.075 4.075 18 H 0.098 0.902 19 C -0.161 4.161 20 C -0.217 4.217 21 C -0.221 4.221 22 C -0.133 4.133 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.025 0.975 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.241 -7.394 -1.114 21.578 hybrid contribution 0.112 0.611 -0.974 1.155 sum 20.353 -6.783 -2.088 21.555 Atomic orbital electron populations 1.69915 1.06322 1.26877 1.51278 1.25004 0.94713 0.99177 0.94516 0.86760 0.80533 0.83494 0.78428 1.20438 1.21439 1.18752 1.21086 0.89457 0.94470 1.50831 0.91157 1.19544 0.96605 0.92049 0.96569 1.21971 0.84492 0.99783 0.99300 1.60779 1.09504 1.11992 1.49709 1.21530 0.95850 0.90891 0.94273 0.90756 1.22197 0.99785 0.99483 0.97448 1.21537 0.95385 1.00327 0.98696 1.21543 0.96431 1.00999 0.95647 1.20728 0.91999 1.00811 0.93948 0.90244 1.22356 0.95073 0.95197 1.03452 1.23014 1.03888 0.98787 0.96004 1.22923 0.97987 1.04638 0.96562 1.21520 0.93804 0.98488 0.99526 0.92763 0.95715 0.97499 0.96126 0.91880 0.84569 0.91970 0.91924 0.92184 0.91820 0.92287 0.92310 0.88314 0.88599 0.89263 0.89339 0.88924 0.91336 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.49 5.42 -3.82 -0.02 1.47 16 11 N -0.69 -11.58 5.76 -106.72 -0.62 -12.20 16 12 C 0.09 1.18 2.86 -67.71 -0.19 0.98 16 13 H 0.07 1.07 7.80 -51.93 -0.40 0.67 16 14 C -0.15 -1.87 5.52 -26.73 -0.15 -2.01 16 15 C -0.12 -1.40 5.67 -26.72 -0.15 -1.55 16 16 C -0.11 -1.13 5.05 -26.73 -0.13 -1.26 16 17 C -0.06 -0.63 2.10 -90.62 -0.19 -0.82 16 18 H 0.08 1.03 6.97 -51.93 -0.36 0.67 16 19 C -0.14 -1.43 5.15 -90.62 -0.47 -1.89 16 20 C -0.18 -1.78 10.18 -26.69 -0.27 -2.05 16 21 C -0.18 -1.69 9.74 -26.69 -0.26 -1.95 16 22 C -0.10 -1.14 4.90 -26.73 -0.13 -1.27 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 26 H 0.02 0.42 7.44 -51.93 -0.39 0.04 16 27 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 28 H 0.33 5.46 5.57 -39.29 -0.22 5.24 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.86 7.45 -51.93 -0.39 0.48 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 6.26 -51.93 -0.32 0.48 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 35 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.85 7.61 -51.93 -0.40 0.46 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -30.00 312.61 -9.74 -39.75 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.43 Total: 2.03 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.52 Total: -24.26 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.16 Total: -39.71 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.00 -9.74 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308901827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.090 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds