Wall clock time and date at job start Sun Mar 29 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99532 * 3 2 1 5 5 H 1.48498 * 109.47131 * 29.99836 * 3 2 1 6 6 H 1.48500 * 109.47362 * 149.99991 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99888 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.47465 * 324.99806 * 12 11 10 14 14 C 1.53000 * 109.47140 * 84.99977 * 12 11 10 15 15 C 1.53008 * 109.47138 * 59.99694 * 14 12 11 16 16 C 1.53006 * 109.46916 * 59.99916 * 15 14 12 17 17 C 1.53000 * 109.47286 * 299.99993 * 16 15 14 18 18 H 1.08997 * 109.47119 * 300.00536 * 17 16 15 19 19 C 1.52993 * 109.47107 * 180.02562 * 17 16 15 20 20 C 1.53002 * 117.50056 * 128.74689 * 19 17 16 21 21 C 1.52999 * 117.49852 * 60.08540 * 19 17 16 22 22 C 1.53002 * 109.46954 * 204.99693 * 12 11 10 23 23 H 0.96991 * 119.99886 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 25 25 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 26 26 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 27 27 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 28 28 H 1.00902 * 110.99923 * 303.95801 * 11 10 9 29 29 H 1.08997 * 109.47119 * 179.97438 * 14 12 11 30 30 H 1.08994 * 109.46950 * 300.00235 * 14 12 11 31 31 H 1.08997 * 109.46721 * 179.97438 * 15 14 12 32 32 H 1.08993 * 109.47196 * 300.00100 * 15 14 12 33 33 H 1.09002 * 109.46863 * 59.99995 * 16 15 14 34 34 H 1.08994 * 109.46862 * 180.02562 * 16 15 14 35 35 H 1.09001 * 115.55151 * 274.41687 * 19 17 16 36 36 H 1.08999 * 117.49321 * 0.02562 * 20 19 17 37 37 H 1.09000 * 117.49809 * 145.02058 * 20 19 17 38 38 H 1.09002 * 117.49822 * 214.97898 * 21 19 17 39 39 H 1.08998 * 117.49850 * 359.97438 * 21 19 17 40 40 H 1.09006 * 109.47141 * 59.99923 * 22 12 11 41 41 H 1.08993 * 109.47094 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4907 -2.6365 0.0022 12 6 6.0171 -4.0079 0.0027 13 1 5.3610 -4.6487 0.5917 14 6 6.0836 -4.5292 -1.4342 15 6 7.0047 -3.6296 -2.2610 16 6 8.4075 -3.6371 -1.6502 17 6 8.3410 -3.1158 -0.2133 18 1 7.9502 -2.0983 -0.2136 19 6 9.7438 -3.1228 0.3972 20 6 10.2345 -1.8314 1.0549 21 6 10.8171 -2.2756 -0.2891 22 6 7.4199 -4.0154 0.6134 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6803 -0.8889 26 1 3.6586 -3.1502 -0.8892 27 1 3.6580 -3.1505 0.8908 28 1 5.8529 -2.1100 -0.7787 29 1 6.4747 -5.5466 -1.4338 30 1 5.0843 -4.5237 -1.8693 31 1 7.0524 -4.0013 -3.2845 32 1 6.6141 -2.6121 -2.2614 33 1 8.7981 -4.6547 -1.6498 34 1 9.0635 -2.9959 -2.2389 35 1 10.0571 -4.0660 0.8448 36 1 9.5576 -0.9770 1.0530 37 1 10.8708 -1.9251 1.9349 38 1 11.8366 -2.6612 -0.2928 39 1 10.5239 -1.7136 -1.1758 40 1 7.3726 -3.6440 1.6371 41 1 7.8107 -5.0329 0.6134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308901827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:52 Heat of formation + Delta-G solvation = -23.624831 kcal Electronic energy + Delta-G solvation = -17241.249216 eV Core-core repulsion = 14733.573992 eV Total energy + Delta-G solvation = -2507.675224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59452 -37.98847 -36.00275 -34.47600 -32.09098 -31.45866 -29.48152 -25.82154 -24.27463 -23.71231 -22.72628 -22.23424 -21.02220 -19.94712 -18.88937 -17.15788 -16.57810 -16.27179 -15.86347 -15.46291 -15.28767 -14.98569 -14.81645 -14.46917 -13.86941 -13.61728 -13.31686 -13.04106 -12.95692 -12.84886 -12.61272 -12.30801 -12.07620 -11.89708 -11.80067 -11.67356 -11.44408 -11.41670 -11.27221 -11.14255 -10.78208 -10.74156 -10.50840 -9.20542 -8.31186 -6.35696 1.34753 1.37550 1.50738 2.35606 2.99333 3.04342 3.37281 3.67942 3.84831 3.95962 4.12422 4.15900 4.18640 4.40590 4.42940 4.51101 4.52500 4.62795 4.68563 4.71108 4.81601 4.83801 4.88521 4.96105 4.99058 5.08749 5.13743 5.21259 5.30108 5.31103 5.33713 5.39212 5.43061 5.47571 5.55823 5.62544 5.69306 6.21201 6.27964 6.58938 6.73588 7.29330 8.85642 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028234 B = 0.005393 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.466909 B = 5190.476651 C = 5714.719319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.031 0.969 9 C -0.003 4.003 10 C 0.087 3.913 11 N -0.687 5.687 12 C 0.082 3.918 13 H 0.065 0.935 14 C -0.145 4.145 15 C -0.121 4.121 16 C -0.102 4.102 17 C -0.053 4.053 18 H 0.059 0.941 19 C -0.146 4.146 20 C -0.190 4.190 21 C -0.175 4.175 22 C -0.089 4.089 23 H 0.267 0.733 24 H 0.021 0.979 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.052 0.948 28 H 0.339 0.661 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.222 -7.455 -2.247 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.041 4.041 10 C -0.042 4.042 11 N -0.319 5.319 12 C -0.028 4.028 13 H 0.084 0.916 14 C -0.184 4.184 15 C -0.159 4.159 16 C -0.139 4.139 17 C -0.072 4.072 18 H 0.077 0.923 19 C -0.164 4.164 20 C -0.227 4.227 21 C -0.211 4.211 22 C -0.127 4.127 23 H 0.076 0.924 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.122 -7.280 -1.557 24.291 hybrid contribution -0.832 0.482 -0.827 1.268 sum 22.290 -6.797 -2.384 23.425 Atomic orbital electron populations 1.70062 1.08278 1.28241 1.52538 1.25987 0.95608 1.03494 0.93942 0.85619 0.79438 0.78124 0.79228 1.19039 1.20810 1.17271 1.21411 0.91949 0.93192 1.50695 0.95067 1.19426 0.93548 0.94623 0.96510 1.21625 0.86946 0.97051 0.98553 1.60714 1.06868 1.14250 1.50112 1.21639 0.96759 0.88949 0.95494 0.91647 1.22137 0.99271 1.00796 0.96238 1.21539 0.95813 0.99188 0.99333 1.21497 0.95680 1.01871 0.94874 1.20650 0.92531 0.99402 0.94572 0.92297 1.22326 0.94537 0.95648 1.03847 1.23047 1.04175 0.98401 0.97053 1.22981 0.98425 1.03786 0.95947 1.21464 0.92596 0.99870 0.98741 0.92405 0.96048 0.96671 0.96748 0.92928 0.84030 0.90008 0.93753 0.90970 0.93296 0.91011 0.91475 0.87337 0.89884 0.88336 0.87866 0.89026 0.92522 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 2 C 0.01 0.39 5.47 84.65 0.46 0.86 16 3 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 7 C -0.53 -31.79 9.66 25.60 0.25 -31.54 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 -0.16 4.30 29.85 0.13 -0.03 16 10 C 0.09 3.61 5.42 86.30 0.47 4.08 16 11 N -0.69 -22.77 5.76 -491.56 -2.83 -25.60 16 12 C 0.08 2.17 2.86 44.92 0.13 2.30 16 13 H 0.07 1.86 7.80 -2.39 -0.02 1.84 16 14 C -0.15 -3.40 5.52 30.60 0.17 -3.23 16 15 C -0.12 -2.54 5.67 30.60 0.17 -2.36 16 16 C -0.10 -1.82 5.05 30.60 0.15 -1.67 16 17 C -0.05 -1.07 2.10 -10.80 -0.02 -1.09 16 18 H 0.06 1.45 6.97 -2.39 -0.02 1.43 16 19 C -0.15 -2.54 5.15 -10.80 -0.06 -2.59 16 20 C -0.19 -3.41 10.18 30.62 0.31 -3.10 16 21 C -0.17 -2.73 9.74 30.62 0.30 -2.43 16 22 C -0.09 -1.95 4.90 30.60 0.15 -1.80 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.02 1.05 7.20 -2.39 -0.02 1.04 16 25 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 26 H 0.01 0.60 7.44 -2.39 -0.02 0.59 16 27 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 28 H 0.34 10.79 5.57 -89.69 -0.50 10.29 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.19 7.45 -2.39 -0.02 1.18 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.17 6.26 -2.39 -0.01 1.16 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.12 7.29 -2.39 -0.02 1.10 16 35 H 0.11 1.71 8.11 -2.39 -0.02 1.69 16 36 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.46 7.61 -2.39 -0.02 1.44 16 40 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.96 312.61 2.38 -62.58 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.42 Total: 18.70 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 2.61 Total: -42.62 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.53 Total: -86.00 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -64.96 2.38 -62.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308901827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.952 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds