Wall clock time and date at job start Sun Mar 29 2020 21:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48502 * 109.47269 * 269.99776 * 3 2 1 5 5 H 1.48500 * 109.47188 * 29.99926 * 3 2 1 6 6 H 1.48502 * 109.47141 * 149.99738 * 3 2 1 7 7 C 1.37876 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47359 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00240 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47067 * 49.03279 * 11 10 9 13 13 C 1.53062 * 109.46730 * 289.03890 * 11 10 9 14 14 C 1.53005 * 109.43608 * 180.56431 * 13 11 10 15 15 C 1.52988 * 109.54672 * 60.29450 * 14 13 11 16 16 C 1.53061 * 109.44040 * 299.70991 * 15 14 13 17 17 C 1.52679 * 109.48631 * 59.42560 * 16 15 14 18 18 C 1.53976 * 109.80961 * 179.67460 * 17 16 15 19 19 C 1.54957 * 104.13177 * 217.33151 * 18 17 16 20 20 C 1.54913 * 102.78585 * 37.69870 * 19 18 17 21 21 C 1.53616 * 109.96680 * 62.32631 * 17 16 15 22 22 H 0.97005 * 120.00629 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47300 * 59.99404 * 9 7 2 24 24 H 1.09002 * 109.47080 * 300.00014 * 9 7 2 25 25 H 1.00900 * 110.99767 * 303.95124 * 10 9 7 26 26 H 1.08998 * 109.48116 * 300.55150 * 13 11 10 27 27 H 1.08999 * 109.47592 * 60.57308 * 13 11 10 28 28 H 1.09006 * 109.45724 * 180.32151 * 14 13 11 29 29 H 1.09003 * 109.45553 * 300.28216 * 14 13 11 30 30 H 1.09003 * 109.47362 * 179.71804 * 15 14 13 31 31 H 1.08998 * 109.47639 * 59.69769 * 15 14 13 32 32 H 1.09000 * 109.47032 * 299.41954 * 16 15 14 33 33 H 1.09003 * 109.46927 * 179.42979 * 16 15 14 34 34 H 1.08997 * 110.49807 * 335.99142 * 18 17 16 35 35 H 1.08997 * 110.50268 * 98.67101 * 18 17 16 36 36 H 1.09001 * 110.75003 * 279.37205 * 19 18 17 37 37 H 1.09000 * 110.74585 * 156.02048 * 19 18 17 38 38 H 1.09001 * 110.48780 * 203.52665 * 20 19 18 39 39 H 1.09003 * 110.48749 * 80.88546 * 20 19 18 40 40 H 1.08997 * 110.05363 * 238.30890 * 21 17 16 41 41 H 1.08996 * 110.05432 * 359.74967 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.7397 -4.9054 -0.7746 13 6 0.8489 -5.1306 1.3656 14 6 0.1317 -6.4821 1.3701 15 6 1.1436 -7.5995 1.1092 16 6 1.8010 -7.3828 -0.2559 17 6 2.5051 -6.0281 -0.2728 18 6 3.1763 -5.8059 -1.6407 19 6 4.5011 -5.0787 -1.2983 20 6 4.9417 -5.7697 0.0163 21 6 3.6220 -6.0042 0.7815 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8405 -3.5486 -0.7809 26 1 1.6134 -5.1223 2.1426 27 1 0.1279 -4.3358 1.5566 28 1 -0.3408 -6.6392 2.3398 29 1 -0.6292 -6.4919 0.5897 30 1 0.6322 -8.5621 1.1176 31 1 1.9075 -7.5868 1.8866 32 1 1.0383 -7.4055 -1.0343 33 1 2.5294 -8.1730 -0.4379 34 1 3.3793 -6.7606 -2.1258 35 1 2.5502 -5.1794 -2.2759 36 1 4.3269 -4.0150 -1.1359 37 1 5.2411 -5.2345 -2.0833 38 1 5.6029 -5.1176 0.5870 39 1 5.4325 -6.7192 -0.1977 40 1 3.4509 -5.1928 1.4889 41 1 3.6590 -6.9576 1.3085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308994085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:22 Heat of formation + Delta-G solvation = -31.283883 kcal Electronic energy + Delta-G solvation = -18152.415293 eV Core-core repulsion = 15644.407948 eV Total energy + Delta-G solvation = -2508.007345 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09209 -35.31621 -34.47969 -32.25720 -30.01834 -28.84944 -28.37902 -25.91274 -23.68447 -22.51987 -21.04868 -20.54166 -19.97570 -17.63171 -16.51006 -15.53359 -15.32047 -14.57312 -14.54533 -14.30446 -13.32377 -13.24463 -13.02912 -12.72770 -12.30945 -12.15876 -11.90954 -11.39951 -11.25958 -10.97900 -10.88933 -10.75429 -10.71718 -10.61425 -10.60152 -10.44738 -10.21248 -10.01224 -9.82376 -9.68144 -9.27165 -9.05640 -8.43228 -7.15380 -5.99278 -4.00659 3.33346 3.39451 3.44018 4.45716 4.77353 4.86793 4.93245 5.18388 5.25657 5.31339 5.36584 5.50080 5.64226 5.70339 5.77474 5.80503 5.83367 5.89686 5.96195 6.02908 6.07576 6.15662 6.21512 6.26285 6.36292 6.38940 6.42856 6.47028 6.56130 6.62768 6.69751 6.80767 6.88147 6.99728 7.38524 7.51505 7.84661 8.21003 8.52607 8.72783 9.09500 9.64083 11.11767 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.007126 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.545282 B = 3928.148220 C = 4565.468549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.686 5.686 11 C 0.102 3.898 12 H 0.024 0.976 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.103 4.103 17 C -0.056 4.056 18 C -0.119 4.119 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.108 4.108 22 H 0.260 0.740 23 H -0.019 1.019 24 H 0.029 0.971 25 H 0.331 0.669 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.833 -14.630 -0.210 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.066 3.934 10 N -0.319 5.319 11 C -0.008 4.008 12 H 0.041 0.959 13 C -0.148 4.148 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.141 4.141 17 C -0.056 4.056 18 C -0.156 4.156 19 C -0.165 4.165 20 C -0.156 4.156 21 C -0.145 4.145 22 H 0.070 0.930 23 H -0.001 1.001 24 H 0.047 0.953 25 H 0.152 0.848 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.760 -14.479 0.472 15.249 hybrid contribution -0.075 0.962 -0.982 1.377 sum 4.685 -13.517 -0.510 14.315 Atomic orbital electron populations 1.69963 1.06050 1.26641 1.51128 1.24979 0.94842 0.99263 0.95489 0.86527 0.79837 0.83234 0.77975 1.20799 1.21291 1.19804 1.21204 0.93434 0.90376 1.49994 0.92122 1.19562 0.90748 0.87455 0.95589 1.60802 1.20964 1.00848 1.49334 1.21316 0.93514 0.90215 0.95782 0.95855 1.21581 0.99603 0.95766 0.97804 1.21531 0.97811 0.95360 1.00901 1.21575 0.98564 0.97832 0.97592 1.21561 0.99062 0.96299 0.97210 1.21016 0.95442 0.94344 0.94837 1.22445 0.96775 0.99822 0.96595 1.22639 0.96236 1.00817 0.96783 1.22281 0.97516 0.99238 0.96543 1.22201 0.92982 1.01435 0.97907 0.93012 1.00075 0.95258 0.84829 0.91443 0.91702 0.92499 0.92556 0.92826 0.91838 0.92480 0.92389 0.92150 0.92059 0.89938 0.92528 0.92027 0.92918 0.89717 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 5.10 5.21 -4.98 -0.03 5.08 16 10 N -0.69 -14.62 5.41 -108.13 -0.58 -15.20 16 11 C 0.10 1.84 1.46 -67.85 -0.10 1.74 16 12 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 13 C -0.11 -1.88 5.00 -26.70 -0.13 -2.02 16 14 C -0.12 -1.63 5.91 -26.73 -0.16 -1.79 16 15 C -0.12 -1.43 5.70 -26.71 -0.15 -1.59 16 16 C -0.10 -1.30 4.42 -26.86 -0.12 -1.42 16 17 C -0.06 -0.82 0.52 -154.01 -0.08 -0.90 16 18 C -0.12 -1.67 5.37 -25.19 -0.14 -1.80 16 19 C -0.13 -1.77 6.44 -24.69 -0.16 -1.93 16 20 C -0.12 -1.57 6.84 -25.02 -0.17 -1.74 16 21 C -0.11 -1.53 4.77 -25.71 -0.12 -1.66 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H -0.02 -0.53 8.12 -51.93 -0.42 -0.95 16 24 H 0.03 0.83 6.67 -51.93 -0.35 0.49 16 25 H 0.33 6.83 4.67 -39.29 -0.18 6.65 16 26 H 0.07 1.16 6.63 -51.93 -0.34 0.82 16 27 H 0.06 1.27 6.75 -51.93 -0.35 0.92 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.76 6.62 -51.93 -0.34 0.42 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 35 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 36 H 0.08 1.33 5.84 -51.93 -0.30 1.03 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.40 6.09 -51.93 -0.32 1.09 16 41 H 0.05 0.68 6.47 -51.93 -0.34 0.34 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -29.19 298.62 -9.24 -38.43 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.10 Total: 3.23 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -1.77 Total: -21.46 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.15 Total: -41.59 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.19 -9.24 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.147 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds