Wall clock time and date at job start Sun Mar 29 2020 21:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48502 * 109.47269 * 269.99776 * 3 2 1 5 5 H 1.48500 * 109.47188 * 29.99926 * 3 2 1 6 6 H 1.48502 * 109.47141 * 149.99738 * 3 2 1 7 7 C 1.37876 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47359 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00240 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47067 * 49.03279 * 11 10 9 13 13 C 1.53062 * 109.46730 * 289.03890 * 11 10 9 14 14 C 1.53005 * 109.43608 * 180.56431 * 13 11 10 15 15 C 1.52988 * 109.54672 * 60.29450 * 14 13 11 16 16 C 1.53061 * 109.44040 * 299.70991 * 15 14 13 17 17 C 1.52679 * 109.48631 * 59.42560 * 16 15 14 18 18 C 1.53976 * 109.80961 * 179.67460 * 17 16 15 19 19 C 1.54957 * 104.13177 * 217.33151 * 18 17 16 20 20 C 1.54913 * 102.78585 * 37.69870 * 19 18 17 21 21 C 1.53616 * 109.96680 * 62.32631 * 17 16 15 22 22 H 0.97005 * 120.00629 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47300 * 59.99404 * 9 7 2 24 24 H 1.09002 * 109.47080 * 300.00014 * 9 7 2 25 25 H 1.00900 * 110.99767 * 303.95124 * 10 9 7 26 26 H 1.08998 * 109.48116 * 300.55150 * 13 11 10 27 27 H 1.08999 * 109.47592 * 60.57308 * 13 11 10 28 28 H 1.09006 * 109.45724 * 180.32151 * 14 13 11 29 29 H 1.09003 * 109.45553 * 300.28216 * 14 13 11 30 30 H 1.09003 * 109.47362 * 179.71804 * 15 14 13 31 31 H 1.08998 * 109.47639 * 59.69769 * 15 14 13 32 32 H 1.09000 * 109.47032 * 299.41954 * 16 15 14 33 33 H 1.09003 * 109.46927 * 179.42979 * 16 15 14 34 34 H 1.08997 * 110.49807 * 335.99142 * 18 17 16 35 35 H 1.08997 * 110.50268 * 98.67101 * 18 17 16 36 36 H 1.09001 * 110.75003 * 279.37205 * 19 18 17 37 37 H 1.09000 * 110.74585 * 156.02048 * 19 18 17 38 38 H 1.09001 * 110.48780 * 203.52665 * 20 19 18 39 39 H 1.09003 * 110.48749 * 80.88546 * 20 19 18 40 40 H 1.08997 * 110.05363 * 238.30890 * 21 17 16 41 41 H 1.08996 * 110.05432 * 359.74967 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.7397 -4.9054 -0.7746 13 6 0.8489 -5.1306 1.3656 14 6 0.1317 -6.4821 1.3701 15 6 1.1436 -7.5995 1.1092 16 6 1.8010 -7.3828 -0.2559 17 6 2.5051 -6.0281 -0.2728 18 6 3.1763 -5.8059 -1.6407 19 6 4.5011 -5.0787 -1.2983 20 6 4.9417 -5.7697 0.0163 21 6 3.6220 -6.0042 0.7815 22 1 -0.4851 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8405 -3.5486 -0.7809 26 1 1.6134 -5.1223 2.1426 27 1 0.1279 -4.3358 1.5566 28 1 -0.3408 -6.6392 2.3398 29 1 -0.6292 -6.4919 0.5897 30 1 0.6322 -8.5621 1.1176 31 1 1.9075 -7.5868 1.8866 32 1 1.0383 -7.4055 -1.0343 33 1 2.5294 -8.1730 -0.4379 34 1 3.3793 -6.7606 -2.1258 35 1 2.5502 -5.1794 -2.2759 36 1 4.3269 -4.0150 -1.1359 37 1 5.2411 -5.2345 -2.0833 38 1 5.6029 -5.1176 0.5870 39 1 5.4325 -6.7192 -0.1977 40 1 3.4509 -5.1928 1.4889 41 1 3.6590 -6.9576 1.3085 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308994085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:22 Heat of formation + Delta-G solvation = -48.008833 kcal Electronic energy + Delta-G solvation = -18153.140542 eV Core-core repulsion = 15644.407948 eV Total energy + Delta-G solvation = -2508.732593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35043 -36.58294 -36.19887 -34.31314 -31.18622 -30.46173 -29.51134 -27.83162 -24.85886 -24.40577 -22.18847 -22.12044 -21.17845 -19.01607 -18.41830 -17.09415 -16.65441 -16.40986 -15.96402 -15.59603 -14.88628 -14.51492 -14.31092 -14.23158 -13.93590 -13.65490 -13.32728 -13.19068 -12.74659 -12.60709 -12.43654 -12.13641 -12.08628 -12.02427 -11.87504 -11.77841 -11.58496 -11.35051 -11.18017 -11.05447 -10.81535 -10.68989 -10.59411 -9.03006 -8.23246 -6.34618 1.38458 1.40583 1.52400 2.38477 3.09502 3.49354 3.66675 3.74443 3.91968 4.11165 4.20584 4.33568 4.40320 4.46596 4.55993 4.64809 4.66883 4.72780 4.81063 4.91127 4.96767 5.01583 5.04969 5.12617 5.13123 5.21780 5.24905 5.26802 5.32676 5.35859 5.37196 5.42890 5.50022 5.57371 5.63280 5.64821 5.78827 6.05279 6.52971 6.78048 6.94540 7.36619 8.88419 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.007126 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.545282 B = 3928.148220 C = 4565.468549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.679 5.679 11 C 0.100 3.900 12 H 0.000 1.000 13 C -0.107 4.107 14 C -0.114 4.114 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.052 4.052 18 C -0.118 4.118 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.106 4.106 22 H 0.264 0.736 23 H -0.053 1.053 24 H 0.001 0.999 25 H 0.335 0.665 26 H 0.066 0.934 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -16.347 -0.257 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.312 5.312 11 C -0.011 4.011 12 H 0.018 0.982 13 C -0.145 4.145 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.052 4.052 18 C -0.155 4.155 19 C -0.166 4.166 20 C -0.151 4.151 21 C -0.143 4.143 22 H 0.073 0.927 23 H -0.036 1.036 24 H 0.019 0.981 25 H 0.157 0.843 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.583 -16.219 0.422 17.509 hybrid contribution -0.682 1.486 -0.967 1.900 sum 5.901 -14.733 -0.545 15.880 Atomic orbital electron populations 1.70103 1.07863 1.27918 1.51628 1.25971 0.95779 1.03416 0.94606 0.85334 0.78526 0.77945 0.78506 1.19640 1.20636 1.18821 1.21548 0.93687 0.91520 1.50448 0.91913 1.19170 0.90728 0.89222 0.92562 1.60742 1.19955 1.01083 1.49468 1.21466 0.94036 0.89982 0.95573 0.98195 1.21541 0.98843 0.96935 0.97181 1.21508 0.98097 0.93923 1.01632 1.21565 0.98188 0.97861 0.97415 1.21579 0.99513 0.95253 0.97535 1.21000 0.94777 0.93990 0.95471 1.22463 0.96304 1.00771 0.96002 1.22619 0.96837 0.99034 0.98149 1.22280 0.96919 1.00330 0.95565 1.22158 0.93312 1.01500 0.97336 0.92678 1.03558 0.98103 0.84317 0.91573 0.95573 0.91131 0.93010 0.90200 0.91163 0.92690 0.89647 0.89369 0.94235 0.92960 0.90469 0.92459 0.90199 0.92707 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.53 -31.61 9.32 25.60 0.24 -31.37 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.92 5.21 85.56 0.45 12.36 16 10 N -0.68 -30.54 5.41 -496.03 -2.68 -33.23 16 11 C 0.10 3.73 1.46 44.83 0.07 3.80 16 12 H 0.00 0.01 8.05 -2.39 -0.02 -0.01 16 13 C -0.11 -3.84 5.00 30.62 0.15 -3.69 16 14 C -0.11 -3.07 5.91 30.59 0.18 -2.89 16 15 C -0.11 -2.39 5.70 30.61 0.17 -2.22 16 16 C -0.10 -2.24 4.42 30.51 0.13 -2.11 16 17 C -0.05 -1.45 0.52 -51.86 -0.03 -1.48 16 18 C -0.12 -3.14 5.37 31.59 0.17 -2.97 16 19 C -0.13 -3.41 6.44 31.92 0.21 -3.21 16 20 C -0.11 -2.72 6.84 31.70 0.22 -2.51 16 21 C -0.11 -2.81 4.77 31.26 0.15 -2.66 16 22 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 23 H -0.05 -3.29 8.12 -2.39 -0.02 -3.31 16 24 H 0.00 0.06 6.67 -2.39 -0.02 0.04 16 25 H 0.34 14.54 4.67 -89.69 -0.42 14.12 16 26 H 0.07 2.36 6.63 -2.39 -0.02 2.34 16 27 H 0.03 1.10 6.75 -2.39 -0.02 1.08 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.43 6.62 -2.39 -0.02 1.41 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.89 7.84 -2.39 -0.02 1.87 16 35 H 0.04 1.21 7.66 -2.39 -0.02 1.20 16 36 H 0.05 1.70 5.84 -2.39 -0.01 1.69 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.80 6.09 -2.39 -0.01 1.78 16 41 H 0.08 1.67 6.47 -2.39 -0.02 1.66 16 Total: -1.00 -65.74 298.62 2.77 -62.97 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.57 Total: 19.22 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 2.57 Total: -38.46 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -2.40 Total: -91.21 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -65.74 2.77 -62.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.962 kcal (2) G-P(sol) polarization free energy of solvation -65.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds