Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48500 * 109.46810 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47141 * 299.99880 * 3 2 1 6 6 H 1.48499 * 109.47029 * 60.00426 * 3 2 1 7 7 C 1.37880 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99870 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46718 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99715 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46890 * 325.00661 * 11 10 9 13 13 C 1.53068 * 109.46758 * 84.99881 * 11 10 9 14 14 C 1.53002 * 109.43863 * 179.44870 * 13 11 10 15 15 C 1.53000 * 109.54010 * 299.69477 * 14 13 11 16 16 C 1.53064 * 109.44347 * 60.29336 * 15 14 13 17 17 C 1.52673 * 109.48770 * 300.57852 * 16 15 14 18 18 C 1.54008 * 109.76989 * 298.06197 * 17 16 15 19 19 C 1.54949 * 104.12613 * 217.23647 * 18 17 16 20 20 C 1.54915 * 102.77855 * 37.71642 * 19 18 17 21 21 C 1.53585 * 110.03152 * 180.70713 * 17 16 15 22 22 H 0.97002 * 119.99823 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47195 * 60.00366 * 9 7 2 24 24 H 1.08996 * 109.47388 * 300.00377 * 9 7 2 25 25 H 1.00898 * 110.99661 * 303.94884 * 10 9 7 26 26 H 1.09002 * 109.47854 * 59.45594 * 13 11 10 27 27 H 1.08995 * 109.47636 * 299.44036 * 13 11 10 28 28 H 1.09001 * 109.45951 * 59.71056 * 14 13 11 29 29 H 1.08994 * 109.46151 * 179.67495 * 14 13 11 30 30 H 1.09007 * 109.46863 * 180.28136 * 15 14 13 31 31 H 1.08997 * 109.47809 * 300.29127 * 15 14 13 32 32 H 1.08996 * 109.47013 * 60.58629 * 16 15 14 33 33 H 1.08998 * 109.46376 * 180.58068 * 16 15 14 34 34 H 1.09005 * 110.49993 * 335.89693 * 18 17 16 35 35 H 1.09002 * 110.50478 * 98.57177 * 18 17 16 36 36 H 1.09003 * 110.74530 * 279.39651 * 19 18 17 37 37 H 1.08997 * 110.91228 * 156.11312 * 19 18 17 38 38 H 1.08999 * 110.47850 * 203.53776 * 20 19 18 39 39 H 1.08994 * 110.48092 * 80.89819 * 20 19 18 40 40 H 1.08999 * 110.05321 * 238.34338 * 21 17 16 41 41 H 1.08999 * 110.05454 * 359.82931 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 0.0001 12 1 0.5923 -4.8249 0.5897 13 6 1.1511 -5.2959 -1.4374 14 6 0.4339 -6.6474 -1.4372 15 6 1.3531 -7.7144 -0.8392 16 6 1.7082 -7.3325 0.5999 17 6 2.4096 -5.9765 0.6086 18 6 3.7229 -6.0640 -0.1910 19 6 4.7080 -5.1672 0.6002 20 6 4.3249 -5.4543 2.0736 21 6 2.7876 -5.5890 2.0459 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8405 -3.5486 -0.7819 26 1 2.0633 -5.3686 -2.0296 27 1 0.4974 -4.5377 -1.8684 28 1 -0.4755 -6.5759 -0.8406 29 1 0.1763 -6.9220 -2.4600 30 1 0.8429 -8.6777 -0.8442 31 1 2.2647 -7.7829 -1.4327 32 1 0.7974 -7.2743 1.1956 33 1 2.3714 -8.0871 1.0228 34 1 4.0833 -7.0923 -0.2217 35 1 3.5817 -5.6779 -1.2005 36 1 4.5522 -4.1158 0.3585 37 1 5.7404 -5.4577 0.4060 38 1 4.6237 -4.6244 2.7139 39 1 4.7832 -6.3833 2.4127 40 1 2.3244 -4.6385 2.3109 41 1 2.4681 -6.3671 2.7391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308994087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -34.790466 kcal Electronic energy + Delta-G solvation = -18142.957277 eV Core-core repulsion = 15634.797875 eV Total energy + Delta-G solvation = -2508.159402 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.99358 -35.29459 -34.44790 -32.28729 -30.00535 -28.83334 -28.26363 -25.81516 -23.57520 -22.34931 -21.23052 -20.80163 -19.68804 -17.95093 -16.38060 -15.42001 -15.11229 -14.57302 -14.54396 -13.98438 -13.55998 -13.30426 -12.76302 -12.66645 -12.50870 -12.07540 -11.92196 -11.46861 -11.23435 -10.96564 -10.85020 -10.77361 -10.70656 -10.60173 -10.56888 -10.25325 -10.14796 -9.92118 -9.76757 -9.72757 -9.50502 -9.04574 -8.44882 -7.11662 -6.00234 -4.01499 3.32095 3.39493 3.44391 4.45215 4.83535 4.92094 4.99671 5.22505 5.33594 5.35116 5.36190 5.54776 5.57702 5.73440 5.77224 5.84153 5.88901 5.92432 5.98412 6.09430 6.14516 6.22777 6.26157 6.31150 6.35750 6.41966 6.45982 6.48787 6.56074 6.67403 6.70721 6.87882 6.94602 7.04305 7.35604 7.51269 7.84053 8.19266 8.48744 8.70246 9.09007 9.63401 11.10774 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.007087 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.112529 B = 3949.700119 C = 4538.318943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.676 5.676 11 C 0.101 3.899 12 H 0.067 0.933 13 C -0.151 4.151 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.105 4.105 17 C -0.047 4.047 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.104 4.104 22 H 0.260 0.740 23 H -0.015 1.015 24 H 0.025 0.975 25 H 0.327 0.673 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.603 -14.420 -0.268 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.305 5.305 11 C -0.010 4.010 12 H 0.085 0.915 13 C -0.190 4.190 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.143 4.143 17 C -0.048 4.048 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.142 4.142 22 H 0.069 0.931 23 H 0.002 0.998 24 H 0.043 0.957 25 H 0.144 0.856 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.531 -14.256 0.435 14.965 hybrid contribution -0.084 0.932 -0.956 1.338 sum 4.448 -13.323 -0.522 14.056 Atomic orbital electron populations 1.69977 1.06052 1.26526 1.51255 1.24985 0.94835 0.99287 0.95514 0.86475 0.80095 0.83586 0.77440 1.19698 1.21193 1.21073 1.21239 0.93483 0.90336 1.49795 0.92031 1.19556 0.90665 0.87479 0.95504 1.60751 1.20452 1.00802 1.48515 1.21443 0.95673 0.90454 0.93432 0.91460 1.22365 1.00399 0.96723 0.99489 1.21461 0.98490 0.95265 0.99993 1.21545 0.99488 0.97723 0.96717 1.21613 0.99942 0.96532 0.96256 1.20920 0.94955 0.93444 0.95448 1.22390 0.94868 0.98486 0.98814 1.22521 0.96848 1.01588 0.94869 1.22207 0.96092 0.99756 0.97099 1.22050 0.95691 1.01516 0.94898 0.93080 0.99761 0.95722 0.85611 0.92050 0.91998 0.92318 0.92843 0.92835 0.92120 0.92388 0.92436 0.92953 0.91995 0.89534 0.93430 0.92251 0.93366 0.90237 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.34 9.32 -34.44 -0.32 -14.66 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.19 5.02 5.24 -4.98 -0.03 5.00 16 10 N -0.68 -13.89 4.10 -108.12 -0.44 -14.33 16 11 C 0.10 1.75 1.44 -67.83 -0.10 1.66 16 12 H 0.07 1.29 7.80 -51.93 -0.40 0.89 16 13 C -0.15 -2.38 4.96 -26.70 -0.13 -2.52 16 14 C -0.11 -1.51 5.91 -26.73 -0.16 -1.67 16 15 C -0.12 -1.39 5.72 -26.70 -0.15 -1.54 16 16 C -0.11 -1.34 4.33 -26.87 -0.12 -1.45 16 17 C -0.05 -0.69 0.53 -154.00 -0.08 -0.77 16 18 C -0.11 -1.49 4.21 -25.18 -0.11 -1.60 16 19 C -0.12 -1.75 6.50 -24.69 -0.16 -1.91 16 20 C -0.11 -1.63 6.84 -25.02 -0.17 -1.80 16 21 C -0.10 -1.59 5.83 -25.72 -0.15 -1.74 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H -0.02 -0.42 7.45 -51.93 -0.39 -0.81 16 24 H 0.02 0.70 8.05 -51.93 -0.42 0.28 16 25 H 0.33 6.59 7.24 -39.29 -0.28 6.31 16 26 H 0.06 0.93 6.17 -51.93 -0.32 0.61 16 27 H 0.06 1.11 7.47 -51.93 -0.39 0.72 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.71 7.20 -51.93 -0.37 0.34 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 34 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 35 H 0.06 0.88 5.56 -51.93 -0.29 0.59 16 36 H 0.09 1.45 6.63 -51.93 -0.34 1.10 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.44 7.34 -51.93 -0.38 1.06 16 41 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 LS Contribution 302.02 15.07 4.55 4.55 Total: -1.00 -28.50 302.02 -9.26 -37.76 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.31 Total: 2.98 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.77 Total: -21.53 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.29 Total: -40.55 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.50 -9.26 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.968 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds