Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48500 * 109.46810 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47141 * 299.99880 * 3 2 1 6 6 H 1.48499 * 109.47029 * 60.00426 * 3 2 1 7 7 C 1.37880 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99625 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99870 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46718 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99715 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46890 * 325.00661 * 11 10 9 13 13 C 1.53068 * 109.46758 * 84.99881 * 11 10 9 14 14 C 1.53002 * 109.43863 * 179.44870 * 13 11 10 15 15 C 1.53000 * 109.54010 * 299.69477 * 14 13 11 16 16 C 1.53064 * 109.44347 * 60.29336 * 15 14 13 17 17 C 1.52673 * 109.48770 * 300.57852 * 16 15 14 18 18 C 1.54008 * 109.76989 * 298.06197 * 17 16 15 19 19 C 1.54949 * 104.12613 * 217.23647 * 18 17 16 20 20 C 1.54915 * 102.77855 * 37.71642 * 19 18 17 21 21 C 1.53585 * 110.03152 * 180.70713 * 17 16 15 22 22 H 0.97002 * 119.99823 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47195 * 60.00366 * 9 7 2 24 24 H 1.08996 * 109.47388 * 300.00377 * 9 7 2 25 25 H 1.00898 * 110.99661 * 303.94884 * 10 9 7 26 26 H 1.09002 * 109.47854 * 59.45594 * 13 11 10 27 27 H 1.08995 * 109.47636 * 299.44036 * 13 11 10 28 28 H 1.09001 * 109.45951 * 59.71056 * 14 13 11 29 29 H 1.08994 * 109.46151 * 179.67495 * 14 13 11 30 30 H 1.09007 * 109.46863 * 180.28136 * 15 14 13 31 31 H 1.08997 * 109.47809 * 300.29127 * 15 14 13 32 32 H 1.08996 * 109.47013 * 60.58629 * 16 15 14 33 33 H 1.08998 * 109.46376 * 180.58068 * 16 15 14 34 34 H 1.09005 * 110.49993 * 335.89693 * 18 17 16 35 35 H 1.09002 * 110.50478 * 98.57177 * 18 17 16 36 36 H 1.09003 * 110.74530 * 279.39651 * 19 18 17 37 37 H 1.08997 * 110.91228 * 156.11312 * 19 18 17 38 38 H 1.08999 * 110.47850 * 203.53776 * 20 19 18 39 39 H 1.08994 * 110.48092 * 80.89819 * 20 19 18 40 40 H 1.08999 * 110.05321 * 238.34338 * 21 17 16 41 41 H 1.08999 * 110.05454 * 359.82931 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 0.0001 12 1 0.5923 -4.8249 0.5897 13 6 1.1511 -5.2959 -1.4374 14 6 0.4339 -6.6474 -1.4372 15 6 1.3531 -7.7144 -0.8392 16 6 1.7082 -7.3325 0.5999 17 6 2.4096 -5.9765 0.6086 18 6 3.7229 -6.0640 -0.1910 19 6 4.7080 -5.1672 0.6002 20 6 4.3249 -5.4543 2.0736 21 6 2.7876 -5.5890 2.0459 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8405 -3.5486 -0.7819 26 1 2.0633 -5.3686 -2.0296 27 1 0.4974 -4.5377 -1.8684 28 1 -0.4755 -6.5759 -0.8406 29 1 0.1763 -6.9220 -2.4600 30 1 0.8429 -8.6777 -0.8442 31 1 2.2647 -7.7829 -1.4327 32 1 0.7974 -7.2743 1.1956 33 1 2.3714 -8.0871 1.0228 34 1 4.0833 -7.0923 -0.2217 35 1 3.5817 -5.6779 -1.2005 36 1 4.5522 -4.1158 0.3585 37 1 5.7404 -5.4577 0.4060 38 1 4.6237 -4.6244 2.7139 39 1 4.7832 -6.3833 2.4127 40 1 2.3244 -4.6385 2.3109 41 1 2.4681 -6.3671 2.7391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308994087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -50.342188 kcal Electronic energy + Delta-G solvation = -18143.631650 eV Core-core repulsion = 15634.797875 eV Total energy + Delta-G solvation = -2508.833775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24787 -36.65553 -36.04020 -34.30685 -31.18492 -30.42600 -29.43362 -27.69635 -24.79386 -24.11298 -22.72837 -22.06113 -20.85988 -19.36826 -18.30631 -16.95456 -16.56482 -16.15394 -15.92859 -15.36571 -14.87069 -14.65105 -14.44181 -14.02275 -13.91738 -13.57694 -13.37743 -13.26415 -12.76011 -12.59305 -12.41922 -12.14671 -12.08841 -11.92242 -11.81966 -11.73543 -11.43638 -11.36723 -11.16801 -10.95292 -10.94485 -10.69936 -10.63925 -8.88820 -8.22102 -6.32824 1.39090 1.39823 1.53677 2.39183 3.10963 3.55368 3.66997 3.83969 4.05569 4.10328 4.20808 4.31606 4.39071 4.54543 4.57215 4.65235 4.70007 4.81451 4.84568 4.93494 5.02066 5.04282 5.08529 5.14645 5.17631 5.23506 5.26351 5.30563 5.33220 5.34580 5.41288 5.49891 5.53655 5.61488 5.71844 5.75117 5.82059 6.06630 6.53882 6.79925 6.95675 7.38373 8.89514 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.007087 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.112529 B = 3949.700119 C = 4538.318943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.667 5.667 11 C 0.100 3.900 12 H 0.038 0.962 13 C -0.145 4.145 14 C -0.111 4.111 15 C -0.111 4.111 16 C -0.103 4.103 17 C -0.042 4.042 18 C -0.102 4.102 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.106 4.106 22 H 0.264 0.736 23 H -0.044 1.044 24 H -0.010 1.010 25 H 0.331 0.669 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.422 -16.155 -0.598 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.082 0.918 9 C 0.086 3.914 10 N -0.296 5.296 11 C -0.011 4.011 12 H 0.056 0.944 13 C -0.184 4.184 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.141 4.141 17 C -0.043 4.043 18 C -0.139 4.139 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.144 4.144 22 H 0.072 0.928 23 H -0.026 1.026 24 H 0.008 0.992 25 H 0.148 0.852 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.360 -16.016 0.102 17.233 hybrid contribution -0.694 1.455 -0.829 1.813 sum 5.666 -14.561 -0.727 15.641 Atomic orbital electron populations 1.70112 1.07833 1.27760 1.51927 1.25955 0.95746 1.03364 0.94776 0.85307 0.78989 0.78455 0.77678 1.18609 1.20345 1.20504 1.21581 0.93715 0.91477 1.49939 0.91839 1.19132 0.90624 0.89207 0.92414 1.60658 1.19449 1.00892 1.48648 1.21523 0.95185 0.89853 0.94519 0.94386 1.22269 1.00553 0.97691 0.97923 1.21453 0.98311 0.94034 1.01133 1.21527 0.99650 0.97860 0.95819 1.21613 0.99958 0.95352 0.97164 1.20880 0.95123 0.93476 0.94828 1.22374 0.93782 0.99773 0.98021 1.22492 0.98333 1.00042 0.95117 1.22208 0.95136 1.00612 0.96897 1.22036 0.96516 1.00022 0.95789 0.92769 1.02648 0.99228 0.85171 0.90955 0.95215 0.93101 0.91270 0.90490 0.91093 0.92944 0.90087 0.90269 0.92502 0.92533 0.91334 0.93452 0.90706 0.94282 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.53 -30.78 9.32 25.60 0.24 -30.54 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.79 5.24 85.56 0.45 12.24 16 10 N -0.67 -28.81 4.10 -495.98 -2.03 -30.84 16 11 C 0.10 3.58 1.44 44.84 0.06 3.65 16 12 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 13 C -0.15 -4.67 4.96 30.62 0.15 -4.52 16 14 C -0.11 -2.80 5.91 30.59 0.18 -2.61 16 15 C -0.11 -2.26 5.72 30.62 0.18 -2.08 16 16 C -0.10 -2.32 4.33 30.51 0.13 -2.18 16 17 C -0.04 -1.19 0.53 -51.85 -0.03 -1.22 16 18 C -0.10 -2.56 4.21 31.60 0.13 -2.43 16 19 C -0.12 -3.33 6.50 31.92 0.21 -3.12 16 20 C -0.11 -2.99 6.84 31.71 0.22 -2.77 16 21 C -0.11 -3.18 5.83 31.25 0.18 -3.00 16 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 23 H -0.04 -2.63 7.45 -2.39 -0.02 -2.65 16 24 H -0.01 -0.64 8.05 -2.39 -0.02 -0.66 16 25 H 0.33 13.82 7.24 -89.70 -0.65 13.17 16 26 H 0.07 2.16 6.17 -2.39 -0.01 2.14 16 27 H 0.03 1.12 7.47 -2.39 -0.02 1.10 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.34 7.20 -2.39 -0.02 1.32 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 34 H 0.08 1.62 7.67 -2.38 -0.02 1.60 16 35 H 0.06 1.50 5.56 -2.39 -0.01 1.48 16 36 H 0.06 1.88 6.63 -2.39 -0.02 1.86 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.47 7.34 -2.39 -0.02 1.46 16 41 H 0.06 1.67 7.67 -2.39 -0.02 1.65 16 Total: -1.00 -63.90 302.02 3.18 -60.72 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.33 Total: 18.65 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.57 Total: -38.17 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -1.75 Total: -88.49 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -63.90 3.18 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308994087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.382 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds