Wall clock time and date at job start Sun Mar 29 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46992 * 2 1 4 4 H 1.09000 * 109.46995 * 305.50749 * 3 2 1 5 5 C 1.50700 * 109.47232 * 185.50295 * 3 2 1 6 6 H 1.07991 * 120.00014 * 239.99803 * 5 3 2 7 7 C 1.37876 * 119.99608 * 59.99966 * 5 3 2 8 8 N 1.31511 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99595 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47488 * 60.00322 * 9 7 5 11 11 H 1.48503 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47456 * 299.99818 * 9 7 5 13 13 N 1.46898 * 109.47156 * 65.50274 * 3 2 1 14 14 C 1.46897 * 111.00225 * 265.18117 * 13 3 2 15 15 H 1.09004 * 110.05798 * 37.53180 * 14 13 3 16 16 C 1.54271 * 110.03033 * 276.11803 * 14 13 3 17 17 C 1.54891 * 104.19550 * 217.10495 * 16 14 13 18 18 C 1.54888 * 102.74835 * 37.93947 * 17 16 14 19 19 C 1.53874 * 110.03369 * 158.94973 * 14 13 3 20 20 H 1.08998 * 110.07216 * 238.58738 * 19 14 13 21 21 C 1.52998 * 110.03525 * 0.02562 * 19 14 13 22 22 C 1.53002 * 117.49527 * 298.62000 * 21 19 14 23 23 C 1.53002 * 60.03245 * 252.52080 * 22 21 19 24 24 H 1.08996 * 109.47029 * 180.10263 * 1 2 3 25 25 H 1.09005 * 109.46791 * 300.09845 * 1 2 3 26 26 H 1.08992 * 109.47293 * 60.09436 * 1 2 3 27 27 H 1.08993 * 109.47245 * 240.00312 * 2 1 3 28 28 H 1.09001 * 109.47417 * 119.99914 * 2 1 3 29 29 H 0.97001 * 120.00399 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00022 * 141.22188 * 13 3 2 31 31 H 1.08999 * 110.48905 * 98.43002 * 16 14 13 32 32 H 1.08997 * 110.59730 * 335.83098 * 16 14 13 33 33 H 1.09001 * 110.75832 * 279.62950 * 17 16 14 34 34 H 1.08996 * 110.76214 * 156.25505 * 17 16 14 35 35 H 1.09005 * 110.48969 * 203.37614 * 18 17 16 36 36 H 1.09000 * 110.60209 * 80.79759 * 18 17 16 37 37 H 1.08996 * 115.56123 * 84.30713 * 21 19 14 38 38 H 1.08994 * 117.49738 * 145.01897 * 22 21 19 39 39 H 1.09000 * 117.49829 * 0.02562 * 22 21 19 40 40 H 1.08997 * 117.49645 * 107.47730 * 23 22 21 41 41 H 1.08994 * 117.49776 * 252.47730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9841 -0.8366 5 6 3.5408 1.4448 -0.1363 6 1 4.1525 1.8871 0.6361 7 6 4.1330 0.8822 -1.2470 8 7 3.3881 0.3440 -2.1878 9 14 5.9933 0.8856 -1.4162 10 1 6.5954 0.1483 -0.2765 11 1 6.3756 0.2258 -2.6905 12 1 6.4878 2.2858 -1.4166 13 7 1.6618 2.0956 1.2603 14 6 0.4050 2.8413 1.1104 15 1 -0.2788 2.2946 0.4611 16 6 0.6871 4.2397 0.5231 17 6 -0.3166 5.1673 1.2519 18 6 -0.3311 4.5924 2.6900 19 6 -0.2423 3.0656 2.4882 20 1 -1.2403 2.6277 2.5083 21 6 0.6259 2.4423 3.5830 22 6 0.8576 0.9310 3.5261 23 6 -0.0639 1.5232 4.5943 24 1 -0.3633 -1.0276 0.0018 25 1 -0.3633 0.5154 0.8892 26 1 -0.3633 0.5123 -0.8908 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8047 -0.0522 -2.9690 30 1 2.4013 2.6964 1.5924 31 1 0.5023 4.2467 -0.5511 32 1 1.7117 4.5450 0.7351 33 1 -1.3055 5.0985 0.7985 34 1 0.0389 6.1976 1.2513 35 1 -1.2589 4.8569 3.1973 36 1 0.5279 4.9530 3.2559 37 1 1.4451 3.0638 3.9444 38 1 1.8292 0.5583 3.8500 39 1 0.3918 0.3809 2.7084 40 1 -1.1358 1.3631 4.4793 41 1 0.3015 1.5398 5.6211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309068112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:46 Heat of formation + Delta-G solvation = 8.168108 kcal Electronic energy + Delta-G solvation = -18199.993851 eV Core-core repulsion = 15693.697273 eV Total energy + Delta-G solvation = -2506.296578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.04269 -35.72826 -34.95256 -32.04876 -30.42786 -28.26387 -27.50503 -24.96674 -22.65201 -21.71321 -21.33756 -20.34915 -19.38968 -18.46363 -16.61025 -15.35095 -15.24855 -14.68916 -14.16948 -13.84879 -13.49528 -12.99493 -12.56897 -12.41535 -12.12532 -11.69153 -11.50024 -11.33824 -11.01859 -10.87395 -10.77141 -10.71793 -10.68114 -10.64178 -10.37439 -10.10613 -9.88986 -9.64634 -9.51221 -9.29673 -9.08147 -8.74857 -8.38669 -6.98011 -5.98760 -4.05400 3.31474 3.36341 3.38954 4.42345 4.46161 4.96447 5.00539 5.13126 5.31078 5.46216 5.56875 5.64058 5.71119 5.86205 5.96296 5.98478 6.03398 6.11279 6.15828 6.21778 6.31551 6.33263 6.39890 6.44160 6.58740 6.63107 6.66770 6.71763 6.75244 6.83613 6.96891 7.15686 7.23152 7.51007 7.68309 7.82270 8.02041 8.36029 8.51635 8.79439 9.09243 9.60388 11.06132 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.007799 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.292490 B = 3589.238006 C = 3844.028014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.668 5.668 14 C 0.086 3.914 15 H 0.078 0.922 16 C -0.150 4.150 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.055 4.055 20 H 0.062 0.938 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.215 4.215 24 H 0.026 0.974 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 5.109 8.092 11.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.021 0.979 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.297 5.297 14 C -0.025 4.025 15 H 0.096 0.904 16 C -0.190 4.190 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.074 4.074 20 H 0.081 0.919 21 C -0.134 4.134 22 C -0.158 4.158 23 C -0.252 4.252 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.398 4.421 8.149 11.861 hybrid contribution 1.336 0.766 -0.763 1.719 sum -6.061 5.186 7.386 10.872 Atomic orbital electron populations 1.21963 1.00018 0.98712 0.99837 1.21514 0.91130 0.99838 1.01725 1.19069 0.93963 0.90987 0.84983 0.97880 1.21347 0.91705 1.37938 1.04797 0.92573 1.24900 0.97882 0.95288 0.95793 1.69878 1.34745 1.38682 1.09383 0.86669 0.85994 0.78096 0.77249 1.20300 1.21395 1.20491 1.60900 1.03405 1.33105 1.32264 1.22319 0.94553 0.91714 0.93939 0.90415 1.23139 0.99034 0.97023 0.99769 1.22440 0.99318 0.98460 0.95990 1.22414 1.00930 0.95539 0.96504 1.21417 0.97450 0.94026 0.94501 0.91931 1.21825 1.00194 0.93996 0.97388 1.22622 0.99112 0.95692 0.98412 1.23168 0.98409 1.08318 0.95332 0.95473 0.93258 0.94655 0.89556 0.94456 0.92982 0.85290 0.92291 0.91641 0.92111 0.92420 0.92573 0.91828 0.89183 0.89901 0.88282 0.90114 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.55 37.16 0.32 -2.66 16 2 C -0.10 -2.44 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.22 2.09 -68.86 -0.14 5.07 16 4 H 0.00 0.09 7.56 -51.93 -0.39 -0.30 16 5 C -0.52 -13.82 8.59 -34.44 -0.30 -14.11 16 6 H 0.06 1.48 7.48 -52.49 -0.39 1.09 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.07 11.29 55.43 0.63 -24.45 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.13 2.91 -99.78 -0.29 -13.42 16 14 C 0.09 1.48 2.07 -66.59 -0.14 1.35 16 15 H 0.08 1.45 5.52 -51.93 -0.29 1.16 16 16 C -0.15 -2.46 6.22 -25.07 -0.16 -2.62 16 17 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 18 C -0.12 -1.51 6.36 -25.07 -0.16 -1.67 16 19 C -0.05 -0.81 3.10 -89.50 -0.28 -1.08 16 20 H 0.06 0.92 7.93 -51.93 -0.41 0.50 16 21 C -0.12 -1.72 4.29 -90.58 -0.39 -2.11 16 22 C -0.12 -1.94 8.43 -26.73 -0.23 -2.16 16 23 C -0.22 -2.96 10.19 -26.69 -0.27 -3.23 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.92 4.56 -51.93 -0.24 0.69 16 26 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 27 H 0.09 2.31 5.94 -51.93 -0.31 2.00 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.67 7.33 -39.29 -0.29 6.38 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.82 7.64 -51.93 -0.40 0.42 16 37 H 0.09 1.35 7.82 -51.93 -0.41 0.94 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.10 1.75 6.36 -51.93 -0.33 1.42 16 40 H 0.08 1.06 8.07 -51.93 -0.42 0.65 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -26.22 307.93 -9.39 -35.62 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.20 Total: 7.47 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -2.15 Total: -26.01 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.34 Total: -37.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.22 -9.39 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309068112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.785 kcal (2) G-P(sol) polarization free energy of solvation -26.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds