Wall clock time and date at job start Sun Mar 29 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46992 * 2 1 4 4 H 1.09000 * 109.46995 * 305.50749 * 3 2 1 5 5 C 1.50700 * 109.47232 * 185.50295 * 3 2 1 6 6 H 1.07991 * 120.00014 * 239.99803 * 5 3 2 7 7 C 1.37876 * 119.99608 * 59.99966 * 5 3 2 8 8 N 1.31511 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99595 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47488 * 60.00322 * 9 7 5 11 11 H 1.48503 * 109.47042 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47456 * 299.99818 * 9 7 5 13 13 N 1.46898 * 109.47156 * 65.50274 * 3 2 1 14 14 C 1.46897 * 111.00225 * 265.18117 * 13 3 2 15 15 H 1.09004 * 110.05798 * 37.53180 * 14 13 3 16 16 C 1.54271 * 110.03033 * 276.11803 * 14 13 3 17 17 C 1.54891 * 104.19550 * 217.10495 * 16 14 13 18 18 C 1.54888 * 102.74835 * 37.93947 * 17 16 14 19 19 C 1.53874 * 110.03369 * 158.94973 * 14 13 3 20 20 H 1.08998 * 110.07216 * 238.58738 * 19 14 13 21 21 C 1.52998 * 110.03525 * 0.02562 * 19 14 13 22 22 C 1.53002 * 117.49527 * 298.62000 * 21 19 14 23 23 C 1.53002 * 60.03245 * 252.52080 * 22 21 19 24 24 H 1.08996 * 109.47029 * 180.10263 * 1 2 3 25 25 H 1.09005 * 109.46791 * 300.09845 * 1 2 3 26 26 H 1.08992 * 109.47293 * 60.09436 * 1 2 3 27 27 H 1.08993 * 109.47245 * 240.00312 * 2 1 3 28 28 H 1.09001 * 109.47417 * 119.99914 * 2 1 3 29 29 H 0.97001 * 120.00399 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00022 * 141.22188 * 13 3 2 31 31 H 1.08999 * 110.48905 * 98.43002 * 16 14 13 32 32 H 1.08997 * 110.59730 * 335.83098 * 16 14 13 33 33 H 1.09001 * 110.75832 * 279.62950 * 17 16 14 34 34 H 1.08996 * 110.76214 * 156.25505 * 17 16 14 35 35 H 1.09005 * 110.48969 * 203.37614 * 18 17 16 36 36 H 1.09000 * 110.60209 * 80.79759 * 18 17 16 37 37 H 1.08996 * 115.56123 * 84.30713 * 21 19 14 38 38 H 1.08994 * 117.49738 * 145.01897 * 22 21 19 39 39 H 1.09000 * 117.49829 * 0.02562 * 22 21 19 40 40 H 1.08997 * 117.49645 * 107.47730 * 23 22 21 41 41 H 1.08994 * 117.49776 * 252.47730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5984 1.9841 -0.8366 5 6 3.5408 1.4448 -0.1363 6 1 4.1525 1.8871 0.6361 7 6 4.1330 0.8822 -1.2470 8 7 3.3881 0.3440 -2.1878 9 14 5.9933 0.8856 -1.4162 10 1 6.5954 0.1483 -0.2765 11 1 6.3756 0.2258 -2.6905 12 1 6.4878 2.2858 -1.4166 13 7 1.6618 2.0956 1.2603 14 6 0.4050 2.8413 1.1104 15 1 -0.2788 2.2946 0.4611 16 6 0.6871 4.2397 0.5231 17 6 -0.3166 5.1673 1.2519 18 6 -0.3311 4.5924 2.6900 19 6 -0.2423 3.0656 2.4882 20 1 -1.2403 2.6277 2.5083 21 6 0.6259 2.4423 3.5830 22 6 0.8576 0.9310 3.5261 23 6 -0.0639 1.5232 4.5943 24 1 -0.3633 -1.0276 0.0018 25 1 -0.3633 0.5154 0.8892 26 1 -0.3633 0.5123 -0.8908 27 1 1.8934 -0.5137 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8047 -0.0522 -2.9690 30 1 2.4013 2.6964 1.5924 31 1 0.5023 4.2467 -0.5511 32 1 1.7117 4.5450 0.7351 33 1 -1.3055 5.0985 0.7985 34 1 0.0389 6.1976 1.2513 35 1 -1.2589 4.8569 3.1973 36 1 0.5279 4.9530 3.2559 37 1 1.4451 3.0638 3.9444 38 1 1.8292 0.5583 3.8500 39 1 0.3918 0.3809 2.7084 40 1 -1.1358 1.3631 4.4793 41 1 0.3015 1.5398 5.6211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309068112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:46 Heat of formation + Delta-G solvation = -3.976036 kcal Electronic energy + Delta-G solvation = -18200.520461 eV Core-core repulsion = 15693.697273 eV Total energy + Delta-G solvation = -2506.823188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37177 -37.27016 -36.38176 -34.00164 -32.10631 -29.49107 -29.20568 -26.64338 -24.47966 -22.90512 -22.62084 -21.49850 -21.26325 -19.83534 -18.48556 -17.00669 -16.60327 -16.28390 -15.71406 -15.34027 -14.78931 -14.62362 -14.20754 -13.91184 -13.70279 -13.20415 -13.18802 -12.88034 -12.78522 -12.56915 -12.42023 -12.12355 -11.94092 -11.88759 -11.87269 -11.55214 -11.49029 -11.29041 -11.00863 -10.76450 -10.67018 -10.45622 -10.31251 -8.65586 -8.07628 -6.21422 1.40885 1.42014 1.49220 2.42471 3.18891 3.26900 3.68454 3.78497 3.95130 4.18577 4.29324 4.42627 4.49070 4.61884 4.67377 4.71195 4.73177 4.80508 4.85588 4.88913 4.93315 4.99452 5.03154 5.13222 5.21583 5.25551 5.29899 5.37633 5.44839 5.46698 5.53794 5.58892 5.60316 5.69496 5.79234 5.83605 6.02821 6.36806 6.62338 6.95745 7.16758 7.48954 8.95572 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024965 B = 0.007799 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.292490 B = 3589.238006 C = 3844.028014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C 0.228 3.772 4 H -0.033 1.033 5 C -0.535 4.535 6 H 0.055 0.945 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.654 5.654 14 C 0.082 3.918 15 H 0.062 0.938 16 C -0.151 4.151 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.048 4.048 20 H 0.069 0.931 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.188 4.188 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 6.137 9.845 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.283 5.283 14 C -0.029 4.029 15 H 0.080 0.920 16 C -0.191 4.191 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.067 4.067 20 H 0.088 0.912 21 C -0.137 4.137 22 C -0.179 4.179 23 C -0.225 4.225 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.144 5.460 9.918 13.946 hybrid contribution 1.552 0.442 -1.315 2.081 sum -6.592 5.902 8.603 12.341 Atomic orbital electron populations 1.21804 0.97263 0.99912 1.00180 1.21317 0.93572 0.99004 0.99576 1.18807 0.92562 0.91203 0.85522 1.01517 1.21717 0.93237 1.37646 1.04773 0.92723 1.25653 1.02076 0.95091 0.95628 1.70021 1.36325 1.39377 1.09758 0.85693 0.80988 0.78210 0.77179 1.19822 1.21200 1.19903 1.60865 1.04148 1.33614 1.29630 1.22393 0.93011 0.91651 0.95811 0.91968 1.23071 0.99467 0.97527 0.99025 1.22407 0.98690 0.98409 0.95761 1.22383 1.02343 0.93610 0.96273 1.21360 0.97249 0.95758 0.92379 0.91217 1.21853 1.00594 0.93192 0.98063 1.22473 0.99382 0.96522 0.99488 1.23191 0.98527 1.05451 0.95343 0.93828 0.91749 0.95368 0.92864 0.95201 0.93141 0.85661 0.94180 0.92874 0.91096 0.90906 0.90202 0.91482 0.89138 0.91018 0.90207 0.89000 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.55 71.98 0.62 -4.82 16 2 C -0.10 -4.66 5.45 30.60 0.17 -4.49 16 3 C 0.23 11.28 2.09 44.17 0.09 11.38 16 4 H -0.03 -1.84 7.56 -2.39 -0.02 -1.86 16 5 C -0.54 -29.17 8.59 25.60 0.22 -28.95 16 6 H 0.05 2.93 7.48 -2.91 -0.02 2.90 16 7 C 0.01 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -53.16 11.29 21.45 0.24 -52.92 16 9 Si 0.95 43.97 29.54 68.60 2.03 45.99 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.65 -26.09 2.91 -469.59 -1.37 -27.46 16 14 C 0.08 2.81 2.07 45.64 0.09 2.90 16 15 H 0.06 2.32 5.52 -2.38 -0.01 2.31 16 16 C -0.15 -4.93 6.22 31.67 0.20 -4.73 16 17 C -0.11 -2.78 6.91 31.89 0.22 -2.56 16 18 C -0.11 -2.46 6.36 31.67 0.20 -2.26 16 19 C -0.05 -1.32 3.10 -10.07 -0.03 -1.35 16 20 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 21 C -0.12 -3.28 4.29 -10.77 -0.05 -3.32 16 22 C -0.14 -4.38 8.43 30.60 0.26 -4.12 16 23 C -0.19 -4.62 10.19 30.62 0.31 -4.30 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 2.39 4.56 -2.38 -0.01 2.38 16 26 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 27 H 0.05 2.95 5.94 -2.39 -0.01 2.94 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.33 13.36 7.33 -89.70 -0.66 12.70 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.84 7.63 -2.39 -0.02 1.82 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.07 1.50 7.64 -2.39 -0.02 1.48 16 37 H 0.09 2.52 7.82 -2.39 -0.02 2.50 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.08 2.78 6.36 -2.39 -0.02 2.77 16 40 H 0.09 2.08 8.07 -2.39 -0.02 2.07 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -57.27 307.93 3.98 -53.29 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.33 Total: 26.48 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 2.75 Total: -45.38 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.12 Total: -80.38 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -57.27 3.98 -53.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309068112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -57.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds