Wall clock time and date at job start Sun Mar 29 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46770 * 2 1 4 4 H 1.09007 * 109.46897 * 304.04843 * 3 2 1 5 5 C 1.50696 * 109.46826 * 184.05142 * 3 2 1 6 6 H 1.07998 * 119.99984 * 239.99906 * 5 3 2 7 7 C 1.37875 * 120.00413 * 59.99983 * 5 3 2 8 8 N 1.31515 * 120.00136 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00452 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47333 * 89.99984 * 9 7 5 11 11 H 1.48498 * 109.47469 * 209.99964 * 9 7 5 12 12 H 1.48500 * 109.47137 * 330.00081 * 9 7 5 13 13 N 1.46896 * 109.47106 * 64.05147 * 3 2 1 14 14 C 1.46905 * 110.99678 * 204.91417 * 13 3 2 15 15 H 1.09000 * 110.01517 * 325.54894 * 14 13 3 16 16 C 1.54260 * 110.07342 * 86.97223 * 14 13 3 17 17 C 1.54889 * 104.20002 * 95.69567 * 16 14 13 18 18 C 1.54896 * 102.74779 * 37.94118 * 17 16 14 19 19 C 1.53878 * 110.02927 * 204.16129 * 14 13 3 20 20 H 1.09001 * 110.03374 * 359.97438 * 19 14 13 21 21 C 1.52997 * 110.03076 * 121.38141 * 19 14 13 22 22 C 1.53006 * 117.49776 * 248.74532 * 21 19 14 23 23 C 1.52999 * 117.50026 * 180.08704 * 21 19 14 24 24 H 1.08996 * 109.47336 * 54.91722 * 1 2 3 25 25 H 1.09007 * 109.46518 * 174.90904 * 1 2 3 26 26 H 1.09003 * 109.47251 * 294.90759 * 1 2 3 27 27 H 1.08996 * 109.47337 * 240.00244 * 2 1 3 28 28 H 1.08998 * 109.47542 * 119.99663 * 2 1 3 29 29 H 0.97001 * 120.00521 * 180.02562 * 8 7 5 30 30 H 1.00890 * 111.00220 * 80.95976 * 13 3 2 31 31 H 1.09010 * 110.48541 * 214.37327 * 16 14 13 32 32 H 1.08997 * 110.48752 * 337.01578 * 16 14 13 33 33 H 1.08994 * 110.75141 * 279.62826 * 17 16 14 34 34 H 1.08995 * 110.75761 * 156.25368 * 17 16 14 35 35 H 1.08991 * 110.48797 * 203.38481 * 18 17 16 36 36 H 1.08996 * 110.59994 * 80.79080 * 18 17 16 37 37 H 1.09003 * 115.55590 * 34.41595 * 21 19 14 38 38 H 1.08996 * 117.49642 * 0.02562 * 22 21 19 39 39 H 1.09006 * 117.49657 * 145.02530 * 22 21 19 40 40 H 1.08999 * 117.50042 * 214.97753 * 23 21 19 41 41 H 1.09001 * 117.49810 * 359.97287 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6185 1.9769 -0.8516 5 6 3.5435 1.4438 -0.1004 6 1 4.1366 1.8927 0.6826 7 6 4.1621 0.8718 -1.1918 8 7 3.4400 0.3247 -2.1451 9 14 6.0259 0.8739 -1.3166 10 1 6.5661 -0.3540 -0.6797 11 1 6.4263 0.9071 -2.7462 12 1 6.5671 2.0703 -0.6230 13 7 1.6318 2.1062 1.2453 14 6 1.5576 3.5624 1.0659 15 1 2.3294 3.8924 0.3707 16 6 0.1643 3.9603 0.5367 17 6 -0.6285 4.3495 1.8091 18 6 0.4379 5.0732 2.6683 19 6 1.7315 4.2699 2.4213 20 1 1.8705 3.5328 3.2122 21 6 2.9334 5.2151 2.3686 22 6 4.1606 4.8448 3.2039 23 6 3.2642 6.0086 3.6342 24 1 -0.3634 0.5906 -0.8409 25 1 -0.3632 -1.0237 -0.0912 26 1 -0.3634 0.4328 0.9321 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8751 -0.0780 -2.9128 30 1 2.2530 1.8664 2.0032 31 1 0.2420 4.8117 -0.1396 32 1 -0.3090 3.1159 0.0357 33 1 -0.9985 3.4608 2.3205 34 1 -1.4484 5.0239 1.5622 35 1 0.1643 5.0408 3.7229 36 1 0.5606 6.1048 2.3385 37 1 3.1062 5.7030 1.4093 38 1 4.1118 3.9275 3.7907 39 1 5.1407 5.0894 2.7943 40 1 3.6549 7.0182 3.5076 41 1 2.6253 5.8575 4.5044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309068115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:48 Heat of formation + Delta-G solvation = -2.179993 kcal Electronic energy + Delta-G solvation = -17845.341589 eV Core-core repulsion = 15338.596284 eV Total energy + Delta-G solvation = -2506.745306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.90404 -36.19532 -34.79830 -31.91548 -30.66948 -28.20533 -27.13306 -25.30100 -22.68954 -22.22770 -21.21496 -20.17327 -19.04709 -18.90307 -16.58258 -15.56648 -15.37549 -14.69680 -14.24889 -13.76477 -13.59104 -13.12911 -12.77447 -12.42965 -12.12487 -11.49239 -11.38853 -11.24595 -11.13933 -11.00078 -10.86337 -10.72574 -10.61273 -10.52180 -10.40165 -10.13351 -10.06654 -9.76451 -9.62192 -9.51503 -9.26602 -8.96645 -8.33432 -7.14405 -5.95239 -4.07729 3.28111 3.35388 3.38044 4.03124 4.42261 4.80750 5.02575 5.05898 5.24942 5.29259 5.39011 5.41588 5.63752 5.76110 5.80122 5.95313 6.04521 6.08377 6.12957 6.23050 6.26775 6.30784 6.39622 6.43421 6.47047 6.54151 6.68380 6.71753 6.79240 6.84697 6.93086 7.19412 7.22984 7.52080 7.66721 7.82959 8.15276 8.23740 8.42598 8.76138 9.06568 9.59651 11.04515 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.009020 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.152202 B = 3103.353613 C = 4221.685685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.097 3.903 15 H 0.049 0.951 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.062 4.062 20 H 0.073 0.927 21 C -0.136 4.136 22 C -0.179 4.179 23 C -0.186 4.186 24 H 0.036 0.964 25 H 0.022 0.978 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.325 0.675 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 8.151 8.143 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.013 4.013 15 H 0.067 0.933 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.081 4.081 20 H 0.091 0.909 21 C -0.154 4.154 22 C -0.216 4.216 23 C -0.223 4.223 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.694 7.956 7.840 12.116 hybrid contribution 2.209 0.172 -0.239 2.228 sum -2.486 8.128 7.601 11.402 Atomic orbital electron populations 1.21688 0.99068 0.98124 1.00339 1.21495 0.92019 0.99442 1.01527 1.19155 0.92446 0.90970 0.86691 0.95031 1.21891 0.92826 1.37502 1.05725 0.92878 1.24924 0.97742 0.95169 0.95719 1.69879 1.34757 1.38192 1.09638 0.86702 0.86440 0.78345 0.77135 1.20731 1.21290 1.20101 1.61015 1.55642 1.05235 1.09217 1.21959 0.95765 0.89651 0.93962 0.93328 1.22380 0.96153 1.00101 0.96449 1.22411 0.96824 0.99447 0.96810 1.22311 0.94759 0.98787 0.99043 1.21589 0.92349 0.95582 0.98535 0.90885 1.22416 0.96484 1.01388 0.95117 1.22969 0.95294 0.99181 1.04121 1.22906 1.04142 0.96082 0.99159 0.94531 0.95842 0.93434 0.89325 0.95253 0.92992 0.85784 0.92930 0.91016 0.91428 0.92826 0.92635 0.92035 0.88102 0.88896 0.89267 0.89481 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.27 1.80 -68.87 -0.12 5.15 16 4 H 0.03 0.87 7.75 -51.92 -0.40 0.46 16 5 C -0.54 -14.49 8.28 -34.44 -0.29 -14.77 16 6 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -25.13 11.30 55.43 0.63 -24.51 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -14.02 5.51 -99.78 -0.55 -14.57 16 14 C 0.10 1.79 2.68 -66.59 -0.18 1.62 16 15 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16 16 C -0.11 -1.90 6.37 -25.08 -0.16 -2.06 16 17 C -0.12 -1.66 6.91 -24.73 -0.17 -1.83 16 18 C -0.11 -1.48 6.12 -25.07 -0.15 -1.64 16 19 C -0.06 -0.94 2.76 -89.50 -0.25 -1.19 16 20 H 0.07 1.15 7.29 -51.93 -0.38 0.78 16 21 C -0.14 -1.98 4.83 -90.62 -0.44 -2.42 16 22 C -0.18 -2.50 10.19 -26.69 -0.27 -2.77 16 23 C -0.19 -2.28 9.99 -26.69 -0.27 -2.55 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16 27 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.74 7.72 -39.30 -0.30 6.44 16 31 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.07 1.33 8.01 -51.93 -0.42 0.92 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.78 7.85 -51.93 -0.41 0.38 16 37 H 0.10 1.54 7.93 -51.93 -0.41 1.13 16 38 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -26.88 321.05 -9.87 -36.76 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.59 Total: 7.08 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -2.17 Total: -25.85 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.08 Total: -39.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.88 -9.87 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309068115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.576 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds