Wall clock time and date at job start Sun Mar 29 2020 22:38:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46770 * 2 1
4 4 H 1.09007 * 109.46897 * 304.04843 * 3 2 1
5 5 C 1.50696 * 109.46826 * 184.05142 * 3 2 1
6 6 H 1.07998 * 119.99984 * 239.99906 * 5 3 2
7 7 C 1.37875 * 120.00413 * 59.99983 * 5 3 2
8 8 N 1.31515 * 120.00136 * 359.97438 * 7 5 3
9 9 Si 1.86794 * 120.00452 * 179.97438 * 7 5 3
10 10 H 1.48505 * 109.47333 * 89.99984 * 9 7 5
11 11 H 1.48498 * 109.47469 * 209.99964 * 9 7 5
12 12 H 1.48500 * 109.47137 * 330.00081 * 9 7 5
13 13 N 1.46896 * 109.47106 * 64.05147 * 3 2 1
14 14 C 1.46905 * 110.99678 * 204.91417 * 13 3 2
15 15 H 1.09000 * 110.01517 * 325.54894 * 14 13 3
16 16 C 1.54260 * 110.07342 * 86.97223 * 14 13 3
17 17 C 1.54889 * 104.20002 * 95.69567 * 16 14 13
18 18 C 1.54896 * 102.74779 * 37.94118 * 17 16 14
19 19 C 1.53878 * 110.02927 * 204.16129 * 14 13 3
20 20 H 1.09001 * 110.03374 * 359.97438 * 19 14 13
21 21 C 1.52997 * 110.03076 * 121.38141 * 19 14 13
22 22 C 1.53006 * 117.49776 * 248.74532 * 21 19 14
23 23 C 1.52999 * 117.50026 * 180.08704 * 21 19 14
24 24 H 1.08996 * 109.47336 * 54.91722 * 1 2 3
25 25 H 1.09007 * 109.46518 * 174.90904 * 1 2 3
26 26 H 1.09003 * 109.47251 * 294.90759 * 1 2 3
27 27 H 1.08996 * 109.47337 * 240.00244 * 2 1 3
28 28 H 1.08998 * 109.47542 * 119.99663 * 2 1 3
29 29 H 0.97001 * 120.00521 * 180.02562 * 8 7 5
30 30 H 1.00890 * 111.00220 * 80.95976 * 13 3 2
31 31 H 1.09010 * 110.48541 * 214.37327 * 16 14 13
32 32 H 1.08997 * 110.48752 * 337.01578 * 16 14 13
33 33 H 1.08994 * 110.75141 * 279.62826 * 17 16 14
34 34 H 1.08995 * 110.75761 * 156.25368 * 17 16 14
35 35 H 1.08991 * 110.48797 * 203.38481 * 18 17 16
36 36 H 1.08996 * 110.59994 * 80.79080 * 18 17 16
37 37 H 1.09003 * 115.55590 * 34.41595 * 21 19 14
38 38 H 1.08996 * 117.49642 * 0.02562 * 22 21 19
39 39 H 1.09006 * 117.49657 * 145.02530 * 22 21 19
40 40 H 1.08999 * 117.50042 * 214.97753 * 23 21 19
41 41 H 1.09001 * 117.49810 * 359.97287 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6185 1.9769 -0.8516
5 6 3.5435 1.4438 -0.1004
6 1 4.1366 1.8927 0.6826
7 6 4.1621 0.8718 -1.1918
8 7 3.4400 0.3247 -2.1451
9 14 6.0259 0.8739 -1.3166
10 1 6.5661 -0.3540 -0.6797
11 1 6.4263 0.9071 -2.7462
12 1 6.5671 2.0703 -0.6230
13 7 1.6318 2.1062 1.2453
14 6 1.5576 3.5624 1.0659
15 1 2.3294 3.8924 0.3707
16 6 0.1643 3.9603 0.5367
17 6 -0.6285 4.3495 1.8091
18 6 0.4379 5.0732 2.6683
19 6 1.7315 4.2699 2.4213
20 1 1.8705 3.5328 3.2122
21 6 2.9334 5.2151 2.3686
22 6 4.1606 4.8448 3.2039
23 6 3.2642 6.0086 3.6342
24 1 -0.3634 0.5906 -0.8409
25 1 -0.3632 -1.0237 -0.0912
26 1 -0.3634 0.4328 0.9321
27 1 1.8934 -0.5138 -0.8900
28 1 1.8934 -0.5138 0.8900
29 1 3.8751 -0.0780 -2.9128
30 1 2.2530 1.8664 2.0032
31 1 0.2420 4.8117 -0.1396
32 1 -0.3090 3.1159 0.0357
33 1 -0.9985 3.4608 2.3205
34 1 -1.4484 5.0239 1.5622
35 1 0.1643 5.0408 3.7229
36 1 0.5606 6.1048 2.3385
37 1 3.1062 5.7030 1.4093
38 1 4.1118 3.9275 3.7907
39 1 5.1407 5.0894 2.7943
40 1 3.6549 7.0182 3.5076
41 1 2.6253 5.8575 4.5044
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309068115.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:38:48
Heat of formation + Delta-G solvation = -2.179993 kcal
Electronic energy + Delta-G solvation = -17845.341589 eV
Core-core repulsion = 15338.596284 eV
Total energy + Delta-G solvation = -2506.745306 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-38.90404 -36.19532 -34.79830 -31.91548 -30.66948 -28.20533 -27.13306 -25.30100
-22.68954 -22.22770 -21.21496 -20.17327 -19.04709 -18.90307 -16.58258 -15.56648
-15.37549 -14.69680 -14.24889 -13.76477 -13.59104 -13.12911 -12.77447 -12.42965
-12.12487 -11.49239 -11.38853 -11.24595 -11.13933 -11.00078 -10.86337 -10.72574
-10.61273 -10.52180 -10.40165 -10.13351 -10.06654 -9.76451 -9.62192 -9.51503
-9.26602 -8.96645 -8.33432 -7.14405 -5.95239 -4.07729 3.28111 3.35388
3.38044 4.03124 4.42261 4.80750 5.02575 5.05898 5.24942 5.29259
5.39011 5.41588 5.63752 5.76110 5.80122 5.95313 6.04521 6.08377
6.12957 6.23050 6.26775 6.30784 6.39622 6.43421 6.47047 6.54151
6.68380 6.71753 6.79240 6.84697 6.93086 7.19412 7.22984 7.52080
7.66721 7.82959 8.15276 8.23740 8.42598 8.76138 9.06568 9.59651
11.04515
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.019317 B = 0.009020 C = 0.006631
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1449.152202 B = 3103.353613 C = 4221.685685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.106 4.106
3 C 0.215 3.785
4 H 0.032 0.968
5 C -0.540 4.540
6 H 0.053 0.947
7 C 0.067 3.933
8 N -0.886 5.886
9 Si 0.886 3.114
10 H -0.281 1.281
11 H -0.287 1.287
12 H -0.276 1.276
13 N -0.681 5.681
14 C 0.097 3.903
15 H 0.049 0.951
16 C -0.113 4.113
17 C -0.117 4.117
18 C -0.111 4.111
19 C -0.062 4.062
20 H 0.073 0.927
21 C -0.136 4.136
22 C -0.179 4.179
23 C -0.186 4.186
24 H 0.036 0.964
25 H 0.022 0.978
26 H 0.047 0.953
27 H 0.088 0.912
28 H 0.029 0.971
29 H 0.260 0.740
30 H 0.325 0.675
31 H 0.052 0.948
32 H 0.071 0.929
33 H 0.067 0.933
34 H 0.053 0.947
35 H 0.055 0.945
36 H 0.061 0.939
37 H 0.101 0.899
38 H 0.093 0.907
39 H 0.089 0.911
40 H 0.087 0.913
41 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.039 8.151 8.143 12.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.145 4.145
3 C 0.107 3.893
4 H 0.050 0.950
5 C -0.579 4.579
6 H 0.071 0.929
7 C -0.136 4.136
8 N -0.525 5.525
9 Si 0.714 3.286
10 H -0.207 1.207
11 H -0.213 1.213
12 H -0.201 1.201
13 N -0.311 5.311
14 C -0.013 4.013
15 H 0.067 0.933
16 C -0.151 4.151
17 C -0.155 4.155
18 C -0.149 4.149
19 C -0.081 4.081
20 H 0.091 0.909
21 C -0.154 4.154
22 C -0.216 4.216
23 C -0.223 4.223
24 H 0.055 0.945
25 H 0.042 0.958
26 H 0.066 0.934
27 H 0.107 0.893
28 H 0.047 0.953
29 H 0.070 0.930
30 H 0.142 0.858
31 H 0.071 0.929
32 H 0.090 0.910
33 H 0.086 0.914
34 H 0.072 0.928
35 H 0.074 0.926
36 H 0.080 0.920
37 H 0.119 0.881
38 H 0.111 0.889
39 H 0.107 0.893
40 H 0.105 0.895
41 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -4.694 7.956 7.840 12.116
hybrid contribution 2.209 0.172 -0.239 2.228
sum -2.486 8.128 7.601 11.402
Atomic orbital electron populations
1.21688 0.99068 0.98124 1.00339 1.21495 0.92019 0.99442 1.01527
1.19155 0.92446 0.90970 0.86691 0.95031 1.21891 0.92826 1.37502
1.05725 0.92878 1.24924 0.97742 0.95169 0.95719 1.69879 1.34757
1.38192 1.09638 0.86702 0.86440 0.78345 0.77135 1.20731 1.21290
1.20101 1.61015 1.55642 1.05235 1.09217 1.21959 0.95765 0.89651
0.93962 0.93328 1.22380 0.96153 1.00101 0.96449 1.22411 0.96824
0.99447 0.96810 1.22311 0.94759 0.98787 0.99043 1.21589 0.92349
0.95582 0.98535 0.90885 1.22416 0.96484 1.01388 0.95117 1.22969
0.95294 0.99181 1.04121 1.22906 1.04142 0.96082 0.99159 0.94531
0.95842 0.93434 0.89325 0.95253 0.92992 0.85784 0.92930 0.91016
0.91428 0.92826 0.92635 0.92035 0.88102 0.88896 0.89267 0.89481
0.89197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.79 9.73 37.16 0.36 -2.43 16
2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.70 16
3 C 0.22 5.27 1.80 -68.87 -0.12 5.15 16
4 H 0.03 0.87 7.75 -51.92 -0.40 0.46 16
5 C -0.54 -14.49 8.28 -34.44 -0.29 -14.77 16
6 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16
7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16
8 N -0.89 -25.13 11.30 55.43 0.63 -24.51 16
9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16
10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16
12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
13 N -0.68 -14.02 5.51 -99.78 -0.55 -14.57 16
14 C 0.10 1.79 2.68 -66.59 -0.18 1.62 16
15 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16
16 C -0.11 -1.90 6.37 -25.08 -0.16 -2.06 16
17 C -0.12 -1.66 6.91 -24.73 -0.17 -1.83 16
18 C -0.11 -1.48 6.12 -25.07 -0.15 -1.64 16
19 C -0.06 -0.94 2.76 -89.50 -0.25 -1.19 16
20 H 0.07 1.15 7.29 -51.93 -0.38 0.78 16
21 C -0.14 -1.98 4.83 -90.62 -0.44 -2.42 16
22 C -0.18 -2.50 10.19 -26.69 -0.27 -2.77 16
23 C -0.19 -2.28 9.99 -26.69 -0.27 -2.55 16
24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
26 H 0.05 0.94 7.87 -51.93 -0.41 0.53 16
27 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16
28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16
29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
30 H 0.33 6.74 7.72 -39.30 -0.30 6.44 16
31 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16
32 H 0.07 1.33 8.01 -51.93 -0.42 0.92 16
33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
36 H 0.06 0.78 7.85 -51.93 -0.41 0.38 16
37 H 0.10 1.54 7.93 -51.93 -0.41 1.13 16
38 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16
39 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16
40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
LS Contribution 321.05 15.07 4.84 4.84
Total: -1.00 -26.88 321.05 -9.87 -36.76
By element:
Atomic # 1 Polarization: 14.68 SS G_CDS: -7.59 Total: 7.08 kcal
Atomic # 6 Polarization: -23.68 SS G_CDS: -2.17 Total: -25.85 kcal
Atomic # 7 Polarization: -39.16 SS G_CDS: 0.08 Total: -39.08 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -26.88 -9.87 -36.76 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309068115.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.576 kcal
(2) G-P(sol) polarization free energy of solvation -26.883 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.180 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds