Wall clock time and date at job start Sun Mar 29 2020 22:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46770 * 2 1 4 4 H 1.09007 * 109.46897 * 304.04843 * 3 2 1 5 5 C 1.50696 * 109.46826 * 184.05142 * 3 2 1 6 6 H 1.07998 * 119.99984 * 239.99906 * 5 3 2 7 7 C 1.37875 * 120.00413 * 59.99983 * 5 3 2 8 8 N 1.31515 * 120.00136 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00452 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47333 * 89.99984 * 9 7 5 11 11 H 1.48498 * 109.47469 * 209.99964 * 9 7 5 12 12 H 1.48500 * 109.47137 * 330.00081 * 9 7 5 13 13 N 1.46896 * 109.47106 * 64.05147 * 3 2 1 14 14 C 1.46905 * 110.99678 * 204.91417 * 13 3 2 15 15 H 1.09000 * 110.01517 * 325.54894 * 14 13 3 16 16 C 1.54260 * 110.07342 * 86.97223 * 14 13 3 17 17 C 1.54889 * 104.20002 * 95.69567 * 16 14 13 18 18 C 1.54896 * 102.74779 * 37.94118 * 17 16 14 19 19 C 1.53878 * 110.02927 * 204.16129 * 14 13 3 20 20 H 1.09001 * 110.03374 * 359.97438 * 19 14 13 21 21 C 1.52997 * 110.03076 * 121.38141 * 19 14 13 22 22 C 1.53006 * 117.49776 * 248.74532 * 21 19 14 23 23 C 1.52999 * 117.50026 * 180.08704 * 21 19 14 24 24 H 1.08996 * 109.47336 * 54.91722 * 1 2 3 25 25 H 1.09007 * 109.46518 * 174.90904 * 1 2 3 26 26 H 1.09003 * 109.47251 * 294.90759 * 1 2 3 27 27 H 1.08996 * 109.47337 * 240.00244 * 2 1 3 28 28 H 1.08998 * 109.47542 * 119.99663 * 2 1 3 29 29 H 0.97001 * 120.00521 * 180.02562 * 8 7 5 30 30 H 1.00890 * 111.00220 * 80.95976 * 13 3 2 31 31 H 1.09010 * 110.48541 * 214.37327 * 16 14 13 32 32 H 1.08997 * 110.48752 * 337.01578 * 16 14 13 33 33 H 1.08994 * 110.75141 * 279.62826 * 17 16 14 34 34 H 1.08995 * 110.75761 * 156.25368 * 17 16 14 35 35 H 1.08991 * 110.48797 * 203.38481 * 18 17 16 36 36 H 1.08996 * 110.59994 * 80.79080 * 18 17 16 37 37 H 1.09003 * 115.55590 * 34.41595 * 21 19 14 38 38 H 1.08996 * 117.49642 * 0.02562 * 22 21 19 39 39 H 1.09006 * 117.49657 * 145.02530 * 22 21 19 40 40 H 1.08999 * 117.50042 * 214.97753 * 23 21 19 41 41 H 1.09001 * 117.49810 * 359.97287 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6185 1.9769 -0.8516 5 6 3.5435 1.4438 -0.1004 6 1 4.1366 1.8927 0.6826 7 6 4.1621 0.8718 -1.1918 8 7 3.4400 0.3247 -2.1451 9 14 6.0259 0.8739 -1.3166 10 1 6.5661 -0.3540 -0.6797 11 1 6.4263 0.9071 -2.7462 12 1 6.5671 2.0703 -0.6230 13 7 1.6318 2.1062 1.2453 14 6 1.5576 3.5624 1.0659 15 1 2.3294 3.8924 0.3707 16 6 0.1643 3.9603 0.5367 17 6 -0.6285 4.3495 1.8091 18 6 0.4379 5.0732 2.6683 19 6 1.7315 4.2699 2.4213 20 1 1.8705 3.5328 3.2122 21 6 2.9334 5.2151 2.3686 22 6 4.1606 4.8448 3.2039 23 6 3.2642 6.0086 3.6342 24 1 -0.3634 0.5906 -0.8409 25 1 -0.3632 -1.0237 -0.0912 26 1 -0.3634 0.4328 0.9321 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8751 -0.0780 -2.9128 30 1 2.2530 1.8664 2.0032 31 1 0.2420 4.8117 -0.1396 32 1 -0.3090 3.1159 0.0357 33 1 -0.9985 3.4608 2.3205 34 1 -1.4484 5.0239 1.5622 35 1 0.1643 5.0408 3.7229 36 1 0.5606 6.1048 2.3385 37 1 3.1062 5.7030 1.4093 38 1 4.1118 3.9275 3.7907 39 1 5.1407 5.0894 2.7943 40 1 3.6549 7.0182 3.5076 41 1 2.6253 5.8575 4.5044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309068115.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:48 Heat of formation + Delta-G solvation = -15.647493 kcal Electronic energy + Delta-G solvation = -17845.925584 eV Core-core repulsion = 15338.596284 eV Total energy + Delta-G solvation = -2507.329300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21166 -37.68417 -36.33004 -33.90108 -32.37339 -29.44355 -28.84103 -27.02788 -24.57120 -23.27035 -22.41939 -21.74449 -20.57227 -20.34482 -18.62306 -16.94920 -16.78940 -16.53975 -15.50655 -15.33089 -15.07914 -14.65697 -14.47676 -14.06911 -13.40036 -13.25889 -13.11811 -12.99941 -12.62472 -12.51968 -12.35674 -12.25729 -12.04699 -11.96829 -11.83353 -11.61821 -11.47517 -11.33873 -11.29466 -10.95674 -10.87328 -10.60291 -10.44864 -8.96016 -8.03935 -6.25984 1.35227 1.36763 1.45547 2.39018 2.94999 3.14711 3.55688 3.79741 3.90971 4.00870 4.15242 4.26319 4.34839 4.58716 4.61800 4.74732 4.76895 4.78346 4.80911 4.84395 4.92926 4.99049 5.06171 5.13755 5.15648 5.21118 5.27754 5.28472 5.31958 5.43340 5.45529 5.48787 5.57014 5.65311 5.68911 5.81398 6.14759 6.24210 6.46392 6.90709 7.07009 7.45299 8.91756 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.009020 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.152202 B = 3103.353613 C = 4221.685685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.004 1.004 5 C -0.553 4.553 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.669 5.669 14 C 0.094 3.906 15 H 0.010 0.990 16 C -0.114 4.114 17 C -0.109 4.109 18 C -0.102 4.102 19 C -0.053 4.053 20 H 0.070 0.930 21 C -0.155 4.155 22 C -0.194 4.194 23 C -0.154 4.154 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.325 0.675 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 9.308 9.955 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C 0.117 3.883 4 H 0.014 0.986 5 C -0.592 4.592 6 H 0.065 0.935 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.298 5.298 14 C -0.016 4.016 15 H 0.028 0.972 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.140 4.140 19 C -0.072 4.072 20 H 0.088 0.912 21 C -0.174 4.174 22 C -0.231 4.231 23 C -0.191 4.191 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.122 0.878 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.091 9.121 9.663 14.230 hybrid contribution 2.337 -0.179 -0.835 2.488 sum -2.754 8.943 8.827 12.864 Atomic orbital electron populations 1.21530 0.96365 0.99364 1.00591 1.21359 0.94416 0.98552 0.99823 1.18880 0.91131 0.91223 0.87077 0.98601 1.22172 0.94185 1.37195 1.05625 0.93467 1.25640 1.01889 0.95003 0.95529 1.70009 1.36296 1.38791 1.10029 0.85746 0.81492 0.78419 0.77112 1.20085 1.20978 1.19825 1.60977 1.54831 1.06639 1.07388 1.22043 0.95696 0.88380 0.95500 0.97175 1.22353 0.95433 0.99415 0.98007 1.22365 0.97309 0.99929 0.95004 1.22287 0.92811 0.98698 1.00209 1.21478 0.94108 0.95690 0.95945 0.91181 1.22345 0.96637 1.02587 0.95825 1.23026 0.95201 1.00349 1.04513 1.22980 1.02335 0.96023 0.97728 0.95255 0.93878 0.92292 0.92337 0.95490 0.93003 0.85858 0.92500 0.93263 0.91751 0.90521 0.90426 0.90955 0.89465 0.89180 0.89562 0.87846 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.73 71.98 0.70 -4.28 16 2 C -0.10 -5.04 5.45 30.60 0.17 -4.87 16 3 C 0.23 11.43 1.80 44.17 0.08 11.51 16 4 H 0.00 -0.23 7.75 -2.38 -0.02 -0.25 16 5 C -0.55 -30.48 8.28 25.60 0.21 -30.27 16 6 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -53.10 11.30 21.45 0.24 -52.86 16 9 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.67 -28.04 5.51 -469.60 -2.59 -30.63 16 14 C 0.09 3.53 2.68 45.64 0.12 3.66 16 15 H 0.01 0.46 7.06 -2.39 -0.02 0.44 16 16 C -0.11 -3.82 6.37 31.67 0.20 -3.62 16 17 C -0.11 -2.81 6.91 31.89 0.22 -2.59 16 18 C -0.10 -2.42 6.12 31.67 0.19 -2.23 16 19 C -0.05 -1.57 2.76 -10.07 -0.03 -1.59 16 20 H 0.07 2.11 7.29 -2.39 -0.02 2.09 16 21 C -0.16 -4.37 4.83 -10.79 -0.05 -4.43 16 22 C -0.19 -5.21 10.19 30.62 0.31 -4.90 16 23 C -0.15 -3.33 9.99 30.62 0.31 -3.02 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 27 H 0.06 3.24 5.97 -2.39 -0.01 3.22 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.32 13.61 7.72 -89.70 -0.69 12.92 16 31 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.05 1.86 8.01 -2.39 -0.02 1.84 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 37 H 0.09 2.68 7.93 -2.39 -0.02 2.66 16 38 H 0.09 2.45 8.07 -2.39 -0.02 2.43 16 39 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -58.88 321.05 2.84 -56.04 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.28 Total: 26.26 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 2.88 Total: -45.13 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.34 Total: -83.49 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -58.88 2.84 -56.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309068115.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.388 kcal (2) G-P(sol) polarization free energy of solvation -58.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds