Wall clock time and date at job start Sun Mar 29 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47316 * 2 1 4 4 H 1.08996 * 109.47253 * 177.53752 * 3 2 1 5 5 C 1.50701 * 109.46872 * 57.53639 * 3 2 1 6 6 H 1.08002 * 119.99856 * 240.00470 * 5 3 2 7 7 C 1.37874 * 119.99862 * 59.99920 * 5 3 2 8 8 N 1.31509 * 120.00265 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99725 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47402 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46704 * 120.00358 * 9 7 5 12 12 H 1.48495 * 109.47224 * 240.00235 * 9 7 5 13 13 N 1.46903 * 109.47102 * 297.53832 * 3 2 1 14 14 C 1.46895 * 110.99885 * 274.38360 * 13 3 2 15 15 C 1.52937 * 109.40974 * 274.95235 * 14 13 3 16 16 C 1.53189 * 109.45565 * 176.91366 * 15 14 13 17 17 C 1.53147 * 108.88003 * 56.56029 * 16 15 14 18 18 C 1.52850 * 117.67448 * 91.50065 * 17 16 15 19 19 C 1.52810 * 117.74786 * 160.37649 * 17 16 15 20 20 C 1.53150 * 115.01279 * 306.06838 * 17 16 15 21 21 C 1.52939 * 109.41357 * 154.59432 * 14 13 3 22 22 H 1.08995 * 109.47053 * 54.54166 * 1 2 3 23 23 H 1.08998 * 109.46660 * 294.54010 * 1 2 3 24 24 H 1.09000 * 109.46845 * 174.53776 * 1 2 3 25 25 H 1.08994 * 109.47427 * 120.00440 * 2 1 3 26 26 H 1.09003 * 109.46854 * 240.00104 * 2 1 3 27 27 H 0.97001 * 120.00072 * 179.97438 * 8 7 5 28 28 H 1.00893 * 111.00006 * 150.42674 * 13 3 2 29 29 H 1.08997 * 109.41750 * 34.73325 * 14 13 3 30 30 H 1.09003 * 109.47875 * 296.90669 * 15 14 13 31 31 H 1.09006 * 109.47786 * 56.92041 * 15 14 13 32 32 H 1.09000 * 109.56286 * 296.74537 * 16 15 14 33 33 H 1.08998 * 109.57123 * 176.38708 * 16 15 14 34 34 H 1.09001 * 117.50569 * 215.21660 * 18 17 16 35 35 H 1.09004 * 117.50552 * 0.27763 * 18 17 16 36 36 H 1.09000 * 117.50333 * 359.85903 * 19 17 16 37 37 H 1.09005 * 117.50123 * 144.89130 * 19 17 16 38 38 H 1.08998 * 109.56713 * 294.11691 * 20 17 16 39 39 H 1.09000 * 109.57240 * 173.75870 * 20 17 16 40 40 H 1.09007 * 109.47257 * 303.07681 * 21 14 13 41 41 H 1.09001 * 109.47513 * 63.09326 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0442 5 6 1.4885 2.1703 1.1988 6 1 0.8723 3.0467 1.0621 7 6 1.7704 1.7173 2.4701 8 7 2.5210 0.6504 2.6366 9 14 1.0872 2.6198 3.9561 10 1 0.2796 3.7804 3.5022 11 1 0.2296 1.6982 4.7438 12 1 2.2089 3.0980 4.8036 13 7 1.5996 2.1177 -1.2281 14 6 2.5367 1.8676 -2.3313 15 6 3.6817 2.8792 -2.2647 16 6 4.6992 2.5716 -3.3679 17 6 3.9819 2.5838 -4.7209 18 6 3.9420 3.9033 -5.4914 19 6 4.8348 2.7592 -5.9767 20 6 2.7571 1.6690 -4.8129 21 6 1.8003 2.0048 -3.6648 22 1 -0.3633 0.5961 -0.8370 23 1 -0.3632 0.4268 0.9348 24 1 -0.3633 -1.0230 -0.0978 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.7196 0.3319 3.5311 28 1 1.4790 3.1073 -1.0733 29 1 2.9402 0.8590 -2.2424 30 1 3.2865 3.8853 -2.4053 31 1 4.1693 2.8128 -1.2920 32 1 5.1378 1.5886 -3.1960 33 1 5.4830 3.3290 -3.3632 34 1 3.0443 4.1215 -6.0699 35 1 4.4308 4.7658 -5.0383 36 1 5.9110 2.8690 -5.8430 37 1 4.5246 2.2246 -6.8746 38 1 3.0718 0.6285 -4.7333 39 1 2.2533 1.8280 -5.7663 40 1 0.9538 1.3184 -3.6847 41 1 1.4416 3.0278 -3.7782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309172591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:51 Heat of formation + Delta-G solvation = -3.581420 kcal Electronic energy + Delta-G solvation = -17689.664518 eV Core-core repulsion = 15182.858441 eV Total energy + Delta-G solvation = -2506.806076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.29800 -36.52891 -34.04564 -31.57002 -30.65031 -29.94480 -26.71256 -24.76859 -23.09211 -22.50478 -22.40064 -20.56959 -18.83774 -18.50202 -16.29451 -15.25324 -15.08546 -14.87648 -13.93157 -13.86838 -13.56238 -13.19400 -12.91756 -12.47445 -12.01839 -11.99351 -11.84381 -11.59058 -11.55880 -11.42365 -10.93677 -10.80469 -10.70233 -10.42515 -10.21052 -10.07908 -9.96117 -9.72320 -9.56917 -9.42316 -9.27488 -8.71384 -8.43836 -7.11348 -5.98643 -4.03273 3.29796 3.38204 3.41990 3.83153 4.42953 4.70410 4.85086 4.94165 5.10699 5.28718 5.34253 5.45692 5.60717 5.63028 5.64440 5.80337 5.83093 5.90185 6.06877 6.14201 6.19873 6.24031 6.28966 6.36713 6.46826 6.55858 6.59263 6.76130 6.80799 6.82225 6.93911 7.29051 7.40958 7.56450 7.78986 7.84969 7.91055 8.31971 8.47985 8.75802 9.07793 9.61451 11.07485 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.005847 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.987869 B = 4788.011717 C = 5079.591541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.091 3.909 15 C -0.143 4.143 16 C -0.077 4.077 17 C -0.113 4.113 18 C -0.175 4.175 19 C -0.183 4.183 20 C -0.080 4.080 21 C -0.101 4.101 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.011 0.989 25 H 0.083 0.917 26 H 0.009 0.991 27 H 0.259 0.741 28 H 0.329 0.671 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.670 2.957 -13.278 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.018 0.982 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.020 4.020 15 C -0.182 4.182 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.212 4.212 19 C -0.220 4.220 20 C -0.118 4.118 21 C -0.139 4.139 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.030 0.970 25 H 0.102 0.898 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.295 2.327 -13.284 13.680 hybrid contribution 0.519 1.028 1.134 1.616 sum 2.814 3.354 -12.150 12.915 Atomic orbital electron populations 1.21433 0.97593 0.97020 1.01535 1.21426 0.95047 0.98397 0.99126 1.19109 0.93324 0.91497 0.85226 0.98172 1.21240 1.31327 1.11825 0.90441 0.92384 1.24875 0.95160 0.95022 0.98799 1.69901 1.37720 1.23283 1.21940 0.86560 0.78759 0.79828 0.82979 1.19809 1.21057 1.21221 1.60759 1.47207 1.15760 1.07432 1.21451 0.90658 0.97965 0.91895 1.22258 0.97636 1.00087 0.98198 1.21099 0.96917 1.01317 0.92165 1.21533 0.98562 0.98652 0.92569 1.22972 1.01803 0.92407 1.04065 1.22975 0.97516 1.03192 0.98291 1.21154 0.93834 0.98286 0.98516 1.21478 0.97601 1.01415 0.93420 0.93439 0.93017 0.96992 0.89847 0.97241 0.93109 0.85350 0.91442 0.92409 0.91641 0.91743 0.92581 0.89162 0.89211 0.89229 0.89200 0.91753 0.92395 0.91583 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.45 37.16 0.35 -2.35 16 2 C -0.10 -2.48 5.55 -26.73 -0.15 -2.62 16 3 C 0.22 5.32 2.10 -68.86 -0.14 5.17 16 4 H 0.00 0.02 7.10 -51.93 -0.37 -0.35 16 5 C -0.51 -13.62 7.31 -34.44 -0.25 -13.87 16 6 H 0.06 1.55 7.61 -52.49 -0.40 1.15 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.19 11.35 55.43 0.63 -24.56 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.68 -14.15 5.30 -101.02 -0.54 -14.69 16 14 C 0.09 1.61 2.19 -67.78 -0.15 1.46 16 15 C -0.14 -2.32 5.16 -26.67 -0.14 -2.46 16 16 C -0.08 -1.06 5.67 -26.56 -0.15 -1.21 16 17 C -0.11 -1.41 1.97 -154.53 -0.31 -1.71 16 18 C -0.18 -1.96 9.93 -26.79 -0.27 -2.23 16 19 C -0.18 -1.96 9.99 -26.81 -0.27 -2.22 16 20 C -0.08 -1.02 5.67 -26.56 -0.15 -1.18 16 21 C -0.10 -1.51 5.53 -26.67 -0.15 -1.66 16 22 H 0.05 1.04 7.52 -51.93 -0.39 0.65 16 23 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.08 2.26 6.14 -51.93 -0.32 1.94 16 26 H 0.01 0.21 7.45 -51.93 -0.39 -0.18 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.33 6.81 7.95 -39.30 -0.31 6.50 16 29 H 0.07 1.30 7.14 -51.93 -0.37 0.93 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.21 7.40 -51.93 -0.38 0.82 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.67 8.09 -51.93 -0.42 0.24 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -27.00 314.93 -9.56 -36.56 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.52 Total: 5.02 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.86 Total: -23.26 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.09 Total: -39.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.00 -9.56 -36.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309172591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.981 kcal (2) G-P(sol) polarization free energy of solvation -27.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds