Wall clock time and date at job start Sun Mar 29 2020 22:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47316 * 2 1 4 4 H 1.08996 * 109.47253 * 177.53752 * 3 2 1 5 5 C 1.50701 * 109.46872 * 57.53639 * 3 2 1 6 6 H 1.08002 * 119.99856 * 240.00470 * 5 3 2 7 7 C 1.37874 * 119.99862 * 59.99920 * 5 3 2 8 8 N 1.31509 * 120.00265 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99725 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47402 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46704 * 120.00358 * 9 7 5 12 12 H 1.48495 * 109.47224 * 240.00235 * 9 7 5 13 13 N 1.46903 * 109.47102 * 297.53832 * 3 2 1 14 14 C 1.46895 * 110.99885 * 274.38360 * 13 3 2 15 15 C 1.52937 * 109.40974 * 274.95235 * 14 13 3 16 16 C 1.53189 * 109.45565 * 176.91366 * 15 14 13 17 17 C 1.53147 * 108.88003 * 56.56029 * 16 15 14 18 18 C 1.52850 * 117.67448 * 91.50065 * 17 16 15 19 19 C 1.52810 * 117.74786 * 160.37649 * 17 16 15 20 20 C 1.53150 * 115.01279 * 306.06838 * 17 16 15 21 21 C 1.52939 * 109.41357 * 154.59432 * 14 13 3 22 22 H 1.08995 * 109.47053 * 54.54166 * 1 2 3 23 23 H 1.08998 * 109.46660 * 294.54010 * 1 2 3 24 24 H 1.09000 * 109.46845 * 174.53776 * 1 2 3 25 25 H 1.08994 * 109.47427 * 120.00440 * 2 1 3 26 26 H 1.09003 * 109.46854 * 240.00104 * 2 1 3 27 27 H 0.97001 * 120.00072 * 179.97438 * 8 7 5 28 28 H 1.00893 * 111.00006 * 150.42674 * 13 3 2 29 29 H 1.08997 * 109.41750 * 34.73325 * 14 13 3 30 30 H 1.09003 * 109.47875 * 296.90669 * 15 14 13 31 31 H 1.09006 * 109.47786 * 56.92041 * 15 14 13 32 32 H 1.09000 * 109.56286 * 296.74537 * 16 15 14 33 33 H 1.08998 * 109.57123 * 176.38708 * 16 15 14 34 34 H 1.09001 * 117.50569 * 215.21660 * 18 17 16 35 35 H 1.09004 * 117.50552 * 0.27763 * 18 17 16 36 36 H 1.09000 * 117.50333 * 359.85903 * 19 17 16 37 37 H 1.09005 * 117.50123 * 144.89130 * 19 17 16 38 38 H 1.08998 * 109.56713 * 294.11691 * 20 17 16 39 39 H 1.09000 * 109.57240 * 173.75870 * 20 17 16 40 40 H 1.09007 * 109.47257 * 303.07681 * 21 14 13 41 41 H 1.09001 * 109.47513 * 63.09326 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0442 5 6 1.4885 2.1703 1.1988 6 1 0.8723 3.0467 1.0621 7 6 1.7704 1.7173 2.4701 8 7 2.5210 0.6504 2.6366 9 14 1.0872 2.6198 3.9561 10 1 0.2796 3.7804 3.5022 11 1 0.2296 1.6982 4.7438 12 1 2.2089 3.0980 4.8036 13 7 1.5996 2.1177 -1.2281 14 6 2.5367 1.8676 -2.3313 15 6 3.6817 2.8792 -2.2647 16 6 4.6992 2.5716 -3.3679 17 6 3.9819 2.5838 -4.7209 18 6 3.9420 3.9033 -5.4914 19 6 4.8348 2.7592 -5.9767 20 6 2.7571 1.6690 -4.8129 21 6 1.8003 2.0048 -3.6648 22 1 -0.3633 0.5961 -0.8370 23 1 -0.3632 0.4268 0.9348 24 1 -0.3633 -1.0230 -0.0978 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.7196 0.3319 3.5311 28 1 1.4790 3.1073 -1.0733 29 1 2.9402 0.8590 -2.2424 30 1 3.2865 3.8853 -2.4053 31 1 4.1693 2.8128 -1.2920 32 1 5.1378 1.5886 -3.1960 33 1 5.4830 3.3290 -3.3632 34 1 3.0443 4.1215 -6.0699 35 1 4.4308 4.7658 -5.0383 36 1 5.9110 2.8690 -5.8430 37 1 4.5246 2.2246 -6.8746 38 1 3.0718 0.6285 -4.7333 39 1 2.2533 1.8280 -5.7663 40 1 0.9538 1.3184 -3.6847 41 1 1.4416 3.0278 -3.7782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309172591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:50 Heat of formation + Delta-G solvation = -17.273246 kcal Electronic energy + Delta-G solvation = -17690.258240 eV Core-core repulsion = 15182.858441 eV Total energy + Delta-G solvation = -2507.399798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44654 -38.10300 -35.65204 -33.46639 -31.88085 -31.57045 -28.46634 -26.37523 -24.98959 -23.71418 -23.26975 -21.97118 -20.70193 -19.65015 -18.22931 -16.85541 -16.38671 -16.17504 -15.68023 -15.29821 -15.14315 -14.52041 -14.31052 -14.08363 -13.84534 -13.41314 -13.15332 -13.01438 -12.87267 -12.82175 -12.48926 -12.35442 -12.30620 -12.05947 -11.92893 -11.67107 -11.35964 -11.30898 -11.07140 -10.81257 -10.72579 -10.52845 -10.39717 -8.86821 -8.08250 -6.19717 1.40152 1.42949 1.53508 2.43250 2.92430 3.20806 3.65047 3.76742 3.84457 3.99781 4.15276 4.24172 4.37437 4.44754 4.58736 4.62343 4.65671 4.81837 4.84369 4.88584 4.96157 4.99871 5.04450 5.05869 5.09970 5.22954 5.24189 5.32206 5.34228 5.34992 5.44418 5.51999 5.57294 5.64937 5.74047 5.85366 5.94588 6.29992 6.57165 6.87466 7.09900 7.49231 8.97271 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.005847 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.987869 B = 4788.011717 C = 5079.591541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.678 5.678 14 C 0.092 3.908 15 C -0.135 4.135 16 C -0.072 4.072 17 C -0.132 4.132 18 C -0.171 4.171 19 C -0.168 4.168 20 C -0.074 4.074 21 C -0.092 4.092 22 H 0.055 0.945 23 H 0.030 0.970 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.017 0.983 27 H 0.259 0.741 28 H 0.329 0.671 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 3.836 -14.962 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.116 3.884 4 H -0.019 1.019 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.307 5.307 14 C -0.019 4.019 15 C -0.174 4.174 16 C -0.110 4.110 17 C -0.132 4.132 18 C -0.208 4.208 19 C -0.204 4.204 20 C -0.112 4.112 21 C -0.130 4.130 22 H 0.074 0.926 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.792 3.213 -14.988 15.433 hybrid contribution 0.715 0.747 1.630 1.930 sum 2.507 3.960 -13.359 14.157 Atomic orbital electron populations 1.21291 0.95988 0.98379 1.00668 1.21310 0.96352 0.97944 0.98039 1.18855 0.90949 0.92036 0.86532 1.01920 1.21492 1.31112 1.11822 0.91420 0.92615 1.25612 0.95448 0.95720 1.01467 1.70036 1.38760 1.24538 1.22447 0.85589 0.78103 0.78810 0.79632 1.19079 1.20821 1.20970 1.60723 1.48031 1.15437 1.06521 1.21506 0.90972 0.97127 0.92257 1.22115 0.97671 0.99905 0.97690 1.21020 0.96507 1.01168 0.92283 1.21435 0.99159 1.00194 0.92435 1.23049 1.02381 0.91941 1.03405 1.23050 0.97730 1.02322 0.97347 1.21102 0.93578 0.98201 0.98298 1.21373 0.97598 1.01598 0.92401 0.92643 0.95045 0.94819 0.92756 0.96433 0.93139 0.85347 0.93618 0.91801 0.94885 0.92585 0.91458 0.88160 0.89048 0.88590 0.87803 0.92137 0.90225 0.92185 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.45 71.98 0.68 -4.11 16 2 C -0.10 -4.87 5.55 30.60 0.17 -4.70 16 3 C 0.22 11.40 2.10 44.17 0.09 11.50 16 4 H -0.04 -2.10 7.10 -2.39 -0.02 -2.12 16 5 C -0.52 -28.25 7.31 25.60 0.19 -28.07 16 6 H 0.06 3.00 7.61 -2.91 -0.02 2.97 16 7 C 0.02 0.91 5.30 84.65 0.45 1.35 16 8 N -0.92 -53.26 11.35 21.45 0.24 -53.02 16 9 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.68 -28.47 5.30 -473.53 -2.51 -30.98 16 14 C 0.09 3.26 2.19 44.88 0.10 3.36 16 15 C -0.13 -4.43 5.16 30.64 0.16 -4.27 16 16 C -0.07 -1.92 5.67 30.71 0.17 -1.75 16 17 C -0.13 -2.99 1.97 -52.20 -0.10 -3.09 16 18 C -0.17 -3.28 9.93 30.55 0.30 -2.98 16 19 C -0.17 -3.03 9.99 30.54 0.31 -2.73 16 20 C -0.07 -1.73 5.67 30.70 0.17 -1.55 16 21 C -0.09 -2.62 5.53 30.63 0.17 -2.45 16 22 H 0.05 2.38 7.52 -2.39 -0.02 2.37 16 23 H 0.03 1.51 7.36 -2.39 -0.02 1.50 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 3.03 6.14 -2.39 -0.01 3.02 16 26 H 0.02 0.81 7.45 -2.39 -0.02 0.79 16 27 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.33 13.73 7.95 -89.70 -0.71 13.02 16 29 H 0.05 1.82 7.14 -2.39 -0.02 1.80 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.03 1.28 7.40 -2.38 -0.02 1.26 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -58.23 314.93 2.88 -55.35 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.26 Total: 22.31 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 2.86 Total: -39.49 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -2.27 Total: -83.99 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -58.23 2.88 -55.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309172591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.080 kcal (2) G-P(sol) polarization free energy of solvation -58.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds