Wall clock time and date at job start Sun Mar 29 2020 22:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.09004 * 109.46711 * 54.48127 * 3 2 1 5 5 C 1.50698 * 109.46858 * 174.47706 * 3 2 1 6 6 H 1.08004 * 119.99373 * 120.00044 * 5 3 2 7 7 C 1.37877 * 120.00340 * 300.00217 * 5 3 2 8 8 N 1.31510 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46874 * 89.99930 * 9 7 5 11 11 H 1.48504 * 109.46870 * 209.99985 * 9 7 5 12 12 H 1.48502 * 109.47068 * 329.99954 * 9 7 5 13 13 N 1.46892 * 109.47113 * 294.48069 * 3 2 1 14 14 C 1.46898 * 111.00377 * 153.02648 * 13 3 2 15 15 C 1.52940 * 109.41582 * 273.81667 * 14 13 3 16 16 C 1.53176 * 109.45509 * 176.90219 * 15 14 13 17 17 C 1.53158 * 108.88042 * 56.56425 * 16 15 14 18 18 C 1.52806 * 117.74761 * 160.37276 * 17 16 15 19 19 C 1.52853 * 117.67687 * 91.49136 * 17 16 15 20 20 C 1.53149 * 115.00715 * 306.06138 * 17 16 15 21 21 C 1.52940 * 109.41611 * 153.45411 * 14 13 3 22 22 H 1.09007 * 109.47088 * 180.60155 * 1 2 3 23 23 H 1.09003 * 109.46978 * 300.59915 * 1 2 3 24 24 H 1.08999 * 109.47040 * 60.60342 * 1 2 3 25 25 H 1.08996 * 109.46876 * 239.99810 * 2 1 3 26 26 H 1.09003 * 109.47011 * 120.00223 * 2 1 3 27 27 H 0.97002 * 120.00390 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00163 * 29.07019 * 13 3 2 29 29 H 1.09006 * 109.40727 * 33.59870 * 14 13 3 30 30 H 1.09001 * 109.47387 * 56.90695 * 15 14 13 31 31 H 1.09003 * 109.46810 * 296.90177 * 15 14 13 32 32 H 1.08997 * 109.57270 * 296.74725 * 16 15 14 33 33 H 1.09002 * 109.57002 * 176.38017 * 16 15 14 34 34 H 1.09006 * 117.50530 * 359.85321 * 18 17 16 35 35 H 1.09000 * 117.50136 * 144.88998 * 18 17 16 36 36 H 1.08992 * 117.50552 * 215.22087 * 19 17 16 37 37 H 1.09004 * 117.50367 * 0.27849 * 19 17 16 38 38 H 1.08993 * 109.56817 * 173.76207 * 20 17 16 39 39 H 1.09004 * 109.56636 * 294.00643 * 20 17 16 40 40 H 1.08994 * 109.47919 * 63.10643 * 21 14 13 41 41 H 1.09005 * 109.47891 * 303.08556 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 0.8365 5 6 3.5408 1.4447 0.1367 6 1 4.1527 1.8869 -0.6356 7 6 4.1327 0.8821 1.2477 8 7 3.3876 0.3431 2.1878 9 14 5.9930 0.8854 1.4174 10 1 6.4236 2.1205 2.1206 11 1 6.4209 -0.3033 2.1978 12 1 6.6132 0.8418 0.0688 13 7 1.6622 2.0954 -1.2604 14 6 1.5362 3.5483 -1.0837 15 6 0.1252 3.8807 -0.5963 16 6 0.0163 5.3866 -0.3378 17 6 0.3876 6.1377 -1.6198 18 6 -0.0760 7.5875 -1.7547 19 6 -0.7411 6.4900 -2.5885 20 6 1.7477 5.7654 -2.2175 21 6 1.8025 4.2477 -2.4175 22 1 -0.3633 -1.0277 0.0108 23 1 -0.3633 0.5231 0.8846 24 1 -0.3633 0.5044 -0.8953 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.8039 -0.0524 2.9696 28 1 0.8104 1.7011 -1.6308 29 1 2.2627 3.8877 -0.3453 30 1 -0.0777 3.3379 0.3269 31 1 -0.5998 3.5890 -1.3563 32 1 0.7000 5.6701 0.4624 33 1 -1.0059 5.6350 -0.0522 34 1 -0.6501 8.0111 -0.9305 35 1 0.5860 8.2816 -2.2724 36 1 -0.5165 6.4620 -3.6547 37 1 -1.7526 6.1916 -2.3128 38 1 1.8734 6.2650 -3.1779 39 1 2.5420 6.0748 -1.5381 40 1 1.0450 3.9491 -3.1420 41 1 2.7889 3.9652 -2.7855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309172592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:53 Heat of formation + Delta-G solvation = -2.928852 kcal Electronic energy + Delta-G solvation = -17721.171388 eV Core-core repulsion = 15214.393609 eV Total energy + Delta-G solvation = -2506.777779 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.26103 -36.56392 -33.99257 -31.77603 -30.57703 -30.07911 -26.87041 -24.96798 -22.70735 -22.46961 -22.32611 -20.28294 -19.57730 -18.29521 -16.14874 -15.32275 -15.21378 -14.82900 -14.09456 -13.83983 -13.50636 -13.18606 -12.83297 -12.71605 -12.10362 -11.95773 -11.91758 -11.62360 -11.47255 -11.33455 -11.06480 -10.82507 -10.73364 -10.61130 -10.17731 -9.93875 -9.90871 -9.86448 -9.62245 -9.49419 -9.29177 -8.97212 -8.30434 -7.09903 -5.91896 -3.95528 3.34832 3.41361 3.46280 3.86185 4.48742 4.73477 4.88276 4.96966 5.14090 5.30468 5.38450 5.48595 5.63979 5.65758 5.68089 5.84070 5.88533 5.92231 6.11411 6.16376 6.19123 6.19293 6.24645 6.30572 6.35286 6.41353 6.44734 6.49464 6.61049 6.87728 6.88604 6.92513 7.15252 7.25010 7.58876 7.83831 7.98628 8.41088 8.47927 8.85672 9.13123 9.69370 11.13327 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.006723 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.421789 B = 4163.620804 C = 4730.187597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.096 3.904 15 C -0.142 4.142 16 C -0.076 4.076 17 C -0.112 4.112 18 C -0.183 4.183 19 C -0.176 4.176 20 C -0.081 4.081 21 C -0.100 4.100 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.258 0.742 28 H 0.316 0.684 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 9.403 -6.464 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.015 4.015 15 C -0.181 4.181 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.220 4.220 19 C -0.213 4.213 20 C -0.118 4.118 21 C -0.139 4.139 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.609 9.309 -6.519 13.146 hybrid contribution 0.034 0.045 0.711 0.713 sum -6.575 9.354 -5.808 12.824 Atomic orbital electron populations 1.21881 0.99678 0.99470 0.99621 1.21785 0.91173 1.00631 1.02972 1.19147 0.95239 0.89792 0.84652 0.97948 1.21245 0.91417 1.36070 1.04118 0.92133 1.24955 0.97963 0.95763 0.95933 1.69872 1.34602 1.39716 1.09605 0.86579 0.86018 0.77282 0.78001 1.20945 1.21427 1.19936 1.60782 1.36924 1.01575 1.32013 1.21407 0.94228 0.89775 0.96044 1.22266 0.99525 0.95192 1.01155 1.21086 1.00284 0.95120 0.94965 1.21538 0.95727 0.96091 0.97883 1.22973 1.04139 0.91917 1.02922 1.22969 0.97468 1.03696 0.97185 1.21160 0.94221 0.96987 0.99479 1.21473 1.01810 0.92711 0.97864 0.94526 0.93953 0.94610 0.94168 0.88333 0.93183 0.86660 0.90324 0.92048 0.92701 0.91526 0.92669 0.89244 0.89179 0.89180 0.89290 0.92455 0.91549 0.92888 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.74 37.16 0.36 -2.54 16 2 C -0.13 -3.01 5.35 -26.73 -0.14 -3.15 16 3 C 0.22 5.42 1.81 -68.87 -0.12 5.30 16 4 H 0.00 0.08 7.19 -51.93 -0.37 -0.29 16 5 C -0.49 -13.55 8.60 -34.44 -0.30 -13.85 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.66 11.29 55.43 0.63 -25.04 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.42 6.05 -101.02 -0.61 -15.03 16 14 C 0.10 1.79 2.18 -67.78 -0.15 1.64 16 15 C -0.14 -2.31 5.16 -26.67 -0.14 -2.45 16 16 C -0.08 -1.08 5.67 -26.56 -0.15 -1.23 16 17 C -0.11 -1.45 1.97 -154.52 -0.31 -1.76 16 18 C -0.18 -2.02 9.99 -26.81 -0.27 -2.29 16 19 C -0.18 -2.01 9.93 -26.79 -0.27 -2.27 16 20 C -0.08 -1.10 5.67 -26.56 -0.15 -1.25 16 21 C -0.10 -1.60 5.53 -26.67 -0.15 -1.75 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.03 0.63 6.48 -51.93 -0.34 0.29 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.32 6.19 6.23 -39.29 -0.24 5.94 16 29 H 0.08 1.68 7.69 -51.93 -0.40 1.28 16 30 H 0.06 1.10 7.51 -51.93 -0.39 0.71 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -27.69 316.16 -9.62 -37.31 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.51 Total: 5.56 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -1.87 Total: -24.20 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.01 Total: -40.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.69 -9.62 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309172592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.384 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds