Wall clock time and date at job start Sun Mar 29 2020 22:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.09004 * 109.46711 * 54.48127 * 3 2 1 5 5 C 1.50698 * 109.46858 * 174.47706 * 3 2 1 6 6 H 1.08004 * 119.99373 * 120.00044 * 5 3 2 7 7 C 1.37877 * 120.00340 * 300.00217 * 5 3 2 8 8 N 1.31510 * 120.00008 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46874 * 89.99930 * 9 7 5 11 11 H 1.48504 * 109.46870 * 209.99985 * 9 7 5 12 12 H 1.48502 * 109.47068 * 329.99954 * 9 7 5 13 13 N 1.46892 * 109.47113 * 294.48069 * 3 2 1 14 14 C 1.46898 * 111.00377 * 153.02648 * 13 3 2 15 15 C 1.52940 * 109.41582 * 273.81667 * 14 13 3 16 16 C 1.53176 * 109.45509 * 176.90219 * 15 14 13 17 17 C 1.53158 * 108.88042 * 56.56425 * 16 15 14 18 18 C 1.52806 * 117.74761 * 160.37276 * 17 16 15 19 19 C 1.52853 * 117.67687 * 91.49136 * 17 16 15 20 20 C 1.53149 * 115.00715 * 306.06138 * 17 16 15 21 21 C 1.52940 * 109.41611 * 153.45411 * 14 13 3 22 22 H 1.09007 * 109.47088 * 180.60155 * 1 2 3 23 23 H 1.09003 * 109.46978 * 300.59915 * 1 2 3 24 24 H 1.08999 * 109.47040 * 60.60342 * 1 2 3 25 25 H 1.08996 * 109.46876 * 239.99810 * 2 1 3 26 26 H 1.09003 * 109.47011 * 120.00223 * 2 1 3 27 27 H 0.97002 * 120.00390 * 180.02562 * 8 7 5 28 28 H 1.00904 * 111.00163 * 29.07019 * 13 3 2 29 29 H 1.09006 * 109.40727 * 33.59870 * 14 13 3 30 30 H 1.09001 * 109.47387 * 56.90695 * 15 14 13 31 31 H 1.09003 * 109.46810 * 296.90177 * 15 14 13 32 32 H 1.08997 * 109.57270 * 296.74725 * 16 15 14 33 33 H 1.09002 * 109.57002 * 176.38017 * 16 15 14 34 34 H 1.09006 * 117.50530 * 359.85321 * 18 17 16 35 35 H 1.09000 * 117.50136 * 144.88998 * 18 17 16 36 36 H 1.08992 * 117.50552 * 215.22087 * 19 17 16 37 37 H 1.09004 * 117.50367 * 0.27849 * 19 17 16 38 38 H 1.08993 * 109.56817 * 173.76207 * 20 17 16 39 39 H 1.09004 * 109.56636 * 294.00643 * 20 17 16 40 40 H 1.08994 * 109.47919 * 63.10643 * 21 14 13 41 41 H 1.09005 * 109.47891 * 303.08556 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 0.8365 5 6 3.5408 1.4447 0.1367 6 1 4.1527 1.8869 -0.6356 7 6 4.1327 0.8821 1.2477 8 7 3.3876 0.3431 2.1878 9 14 5.9930 0.8854 1.4174 10 1 6.4236 2.1205 2.1206 11 1 6.4209 -0.3033 2.1978 12 1 6.6132 0.8418 0.0688 13 7 1.6622 2.0954 -1.2604 14 6 1.5362 3.5483 -1.0837 15 6 0.1252 3.8807 -0.5963 16 6 0.0163 5.3866 -0.3378 17 6 0.3876 6.1377 -1.6198 18 6 -0.0760 7.5875 -1.7547 19 6 -0.7411 6.4900 -2.5885 20 6 1.7477 5.7654 -2.2175 21 6 1.8025 4.2477 -2.4175 22 1 -0.3633 -1.0277 0.0108 23 1 -0.3633 0.5231 0.8846 24 1 -0.3633 0.5044 -0.8953 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.8039 -0.0524 2.9696 28 1 0.8104 1.7011 -1.6308 29 1 2.2627 3.8877 -0.3453 30 1 -0.0777 3.3379 0.3269 31 1 -0.5998 3.5890 -1.3563 32 1 0.7000 5.6701 0.4624 33 1 -1.0059 5.6350 -0.0522 34 1 -0.6501 8.0111 -0.9305 35 1 0.5860 8.2816 -2.2724 36 1 -0.5165 6.4620 -3.6547 37 1 -1.7526 6.1916 -2.3128 38 1 1.8734 6.2650 -3.1779 39 1 2.5420 6.0748 -1.5381 40 1 1.0450 3.9491 -3.1420 41 1 2.7889 3.9652 -2.7855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309172592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:53 Heat of formation + Delta-G solvation = -17.655440 kcal Electronic energy + Delta-G solvation = -17721.809981 eV Core-core repulsion = 15214.393609 eV Total energy + Delta-G solvation = -2507.416371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44638 -38.14590 -35.57566 -33.75417 -31.80538 -31.62544 -28.69720 -26.53651 -24.49008 -23.72591 -23.23844 -21.64825 -21.47033 -19.47914 -18.28525 -16.82027 -16.62514 -16.16871 -15.77699 -15.40112 -14.86167 -14.54677 -14.49108 -14.21370 -13.59566 -13.51233 -13.15146 -13.05480 -12.94939 -12.74456 -12.55184 -12.54448 -12.32628 -11.97833 -11.96045 -11.73798 -11.52572 -11.29885 -11.13170 -10.95537 -10.73236 -10.42544 -10.39732 -8.87960 -8.05394 -6.17341 1.39843 1.40831 1.51762 2.43998 2.92873 3.19064 3.64672 3.76164 3.84178 4.00726 4.15853 4.25599 4.39738 4.44437 4.50500 4.57520 4.61669 4.63039 4.71089 4.84813 4.88957 4.98569 5.03920 5.07828 5.09831 5.12657 5.22829 5.23949 5.27090 5.32202 5.34969 5.41043 5.52253 5.57933 5.66711 5.79223 5.93108 6.39858 6.59964 6.97687 7.08357 7.51928 8.97308 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.006723 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.421789 B = 4163.620804 C = 4730.187597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.031 1.031 5 C -0.510 4.510 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.686 5.686 14 C 0.097 3.903 15 C -0.132 4.132 16 C -0.072 4.072 17 C -0.134 4.134 18 C -0.170 4.170 19 C -0.166 4.166 20 C -0.075 4.075 21 C -0.092 4.092 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.259 0.741 28 H 0.326 0.674 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 10.549 -7.856 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.013 1.013 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.316 5.316 14 C -0.013 4.013 15 C -0.172 4.172 16 C -0.110 4.110 17 C -0.134 4.134 18 C -0.206 4.206 19 C -0.203 4.203 20 C -0.113 4.113 21 C -0.130 4.130 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.568 10.466 -7.922 15.152 hybrid contribution 0.324 -0.297 1.143 1.225 sum -7.244 10.169 -6.779 14.207 Atomic orbital electron populations 1.21737 0.96265 1.01099 1.00342 1.21617 0.94252 0.99241 1.01071 1.18873 0.93670 0.90418 0.85043 1.01328 1.21506 0.93078 1.36219 1.04057 0.93528 1.25671 1.02191 0.95427 0.95637 1.70000 1.36157 1.40064 1.09887 0.85632 0.80978 0.77476 0.77993 1.20436 1.20727 1.19636 1.60702 1.37753 1.03074 1.30088 1.21401 0.94803 0.88306 0.96836 1.22113 0.97968 0.96837 1.00242 1.21020 1.00968 0.93472 0.95579 1.21416 0.95979 0.98038 0.97939 1.23053 1.03670 0.90920 1.02995 1.23054 0.96977 1.02849 0.97389 1.21096 0.94692 0.95089 1.00424 1.21372 1.01201 0.94312 0.96122 0.92393 0.94615 0.92467 0.94625 0.91526 0.93135 0.85506 0.94235 0.94430 0.91147 0.93075 0.90918 0.88448 0.88055 0.88179 0.88597 0.90271 0.92761 0.91591 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.74 71.98 0.70 -4.53 16 2 C -0.12 -5.94 5.35 30.60 0.16 -5.78 16 3 C 0.23 11.70 1.81 44.17 0.08 11.78 16 4 H -0.03 -1.76 7.19 -2.38 -0.02 -1.78 16 5 C -0.51 -29.20 8.60 25.60 0.22 -28.98 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.49 5.29 84.66 0.45 0.93 16 8 N -0.92 -54.05 11.29 21.45 0.24 -53.80 16 9 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 N -0.69 -29.42 6.05 -473.53 -2.86 -32.29 16 14 C 0.10 3.67 2.18 44.88 0.10 3.76 16 15 C -0.13 -4.28 5.16 30.63 0.16 -4.12 16 16 C -0.07 -1.97 5.67 30.71 0.17 -1.80 16 17 C -0.13 -3.16 1.97 -52.19 -0.10 -3.26 16 18 C -0.17 -3.19 9.99 30.54 0.31 -2.88 16 19 C -0.17 -3.17 9.93 30.56 0.30 -2.86 16 20 C -0.08 -1.94 5.67 30.71 0.17 -1.77 16 21 C -0.09 -2.87 5.53 30.64 0.17 -2.70 16 22 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.92 6.48 -2.39 -0.02 1.90 16 25 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 3.66 5.94 -2.39 -0.01 3.64 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.33 12.60 6.23 -89.69 -0.56 12.04 16 29 H 0.04 1.79 7.69 -2.38 -0.02 1.77 16 30 H 0.04 1.37 7.51 -2.39 -0.02 1.35 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 34 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -61.03 316.16 2.71 -58.32 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.41 Total: 22.75 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 2.89 Total: -42.20 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -2.62 Total: -86.09 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -61.03 2.71 -58.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309172592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.667 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds