Wall clock time and date at job start Sun Mar 29 2020 22:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 H 1.09005 * 109.47143 * 178.97248 * 3 2 1 5 5 C 1.50702 * 109.46976 * 58.97457 * 3 2 1 6 6 H 1.07997 * 120.00201 * 240.00099 * 5 3 2 7 7 C 1.37877 * 119.99961 * 59.99502 * 5 3 2 8 8 N 1.31512 * 120.00125 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00183 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46981 * 90.00081 * 9 7 5 11 11 H 1.48496 * 109.47097 * 210.00518 * 9 7 5 12 12 H 1.48499 * 109.47037 * 330.00546 * 9 7 5 13 13 N 1.46897 * 109.47162 * 298.97765 * 3 2 1 14 14 C 1.48233 * 110.99812 * 300.71764 * 13 3 2 15 15 C 1.53909 * 104.03061 * 214.40376 * 14 13 3 16 16 H 1.08996 * 109.20536 * 282.74108 * 15 14 13 17 17 C 1.50749 * 112.99841 * 161.52835 * 15 14 13 18 18 C 1.52822 * 111.73401 * 294.90034 * 17 15 14 19 19 C 1.53335 * 108.09681 * 301.06891 * 18 17 15 20 20 C 1.52592 * 108.41476 * 64.10242 * 19 18 17 21 21 C 1.53005 * 111.04325 * 297.65547 * 20 19 18 22 22 H 1.09002 * 112.53246 * 286.39987 * 21 20 19 23 23 C 1.47594 * 110.99742 * 179.88410 * 13 3 2 24 24 H 1.08996 * 109.47042 * 64.03077 * 1 2 3 25 25 H 1.08999 * 109.46777 * 184.03366 * 1 2 3 26 26 H 1.09002 * 109.46967 * 304.02519 * 1 2 3 27 27 H 1.09007 * 109.47221 * 240.00480 * 2 1 3 28 28 H 1.09005 * 109.47666 * 120.00529 * 2 1 3 29 29 H 0.97004 * 120.00599 * 179.97438 * 8 7 5 30 30 H 1.09003 * 110.52017 * 333.03776 * 14 13 3 31 31 H 1.09003 * 110.51700 * 95.63105 * 14 13 3 32 32 H 1.09004 * 109.02404 * 55.48026 * 17 15 14 33 33 H 1.09001 * 109.03251 * 174.31592 * 17 15 14 34 34 H 1.08999 * 109.73592 * 60.71180 * 18 17 15 35 35 H 1.09001 * 109.73920 * 181.41886 * 18 17 15 36 36 H 1.08997 * 109.67417 * 183.83643 * 19 18 17 37 37 H 1.09000 * 109.67438 * 304.33659 * 19 18 17 38 38 H 1.09002 * 109.16139 * 177.25154 * 20 19 18 39 39 H 1.09000 * 109.16142 * 58.05648 * 20 19 18 40 40 H 1.08999 * 109.97304 * 1.88162 * 23 13 3 41 41 H 1.09005 * 109.96756 * 240.61964 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0184 5 6 1.5170 2.1602 1.2176 6 1 0.8979 3.0376 1.1028 7 6 1.8288 1.6965 2.4781 8 7 2.5830 0.6283 2.6178 9 14 1.1800 2.5857 3.9873 10 1 -0.1347 2.0125 4.3724 11 1 2.1393 2.4217 5.1089 12 1 1.0196 4.0297 3.6803 13 7 1.5707 2.1278 -1.2116 14 6 2.0524 1.4384 -2.4322 15 6 2.2922 2.5804 -3.4357 16 1 1.3347 2.9108 -3.8384 17 6 3.1879 2.1803 -4.5803 18 6 4.6039 1.8574 -4.1047 19 6 5.1685 3.1024 -3.4101 20 6 4.3283 3.3840 -2.1679 21 6 2.8773 3.6911 -2.5440 22 1 2.7612 4.6797 -2.9883 23 6 2.0423 3.5260 -1.2446 24 1 -0.3633 0.4500 -0.9239 25 1 -0.3633 -1.0251 0.0723 26 1 -0.3633 0.5751 0.8517 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.8027 0.3022 3.5046 30 1 2.9821 0.9068 -2.2291 31 1 1.2943 0.7506 -2.8069 32 1 2.7682 1.3012 -5.0695 33 1 3.2324 2.9981 -5.2995 34 1 4.5752 1.0250 -3.4016 35 1 5.2289 1.5973 -4.9590 36 1 6.2038 2.9231 -3.1201 37 1 5.1196 3.9547 -4.0879 38 1 4.7490 4.2384 -1.6375 39 1 4.3517 2.5117 -1.5148 40 1 2.6650 3.7295 -0.3735 41 1 1.1904 4.2059 -1.2607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309930676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:36 Heat of formation + Delta-G solvation = -20.864951 kcal Electronic energy + Delta-G solvation = -18418.937122 eV Core-core repulsion = 15911.381576 eV Total energy + Delta-G solvation = -2507.555546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81153 -35.98313 -33.33357 -31.45760 -31.13746 -29.14174 -26.95360 -25.79857 -23.62759 -22.34440 -21.72477 -20.34979 -19.02413 -18.06893 -15.97580 -15.67245 -15.14180 -14.37833 -14.01268 -13.79164 -13.68463 -13.09040 -12.76782 -12.46429 -12.34017 -11.83218 -11.60591 -11.51152 -11.22332 -11.08126 -10.93515 -10.81443 -10.80361 -10.51260 -10.33514 -10.10243 -9.79534 -9.63961 -9.57250 -9.50438 -9.27237 -8.77314 -8.37453 -7.01766 -5.96380 -3.99013 3.32631 3.39279 3.42527 4.44468 4.87624 4.92979 4.93405 5.23299 5.35227 5.46502 5.48715 5.54822 5.68854 5.79479 5.83083 5.90190 6.02875 6.18039 6.21271 6.27639 6.33577 6.39434 6.46990 6.54175 6.62516 6.65136 6.68179 6.71776 6.83550 6.87673 6.93646 7.19164 7.34073 7.50715 7.71133 7.80137 7.90068 8.23478 8.42466 8.65927 9.07153 9.64585 11.10081 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031537 B = 0.007800 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.626924 B = 3588.830734 C = 3886.079782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.213 3.787 4 H -0.003 1.003 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.521 5.521 14 C 0.052 3.948 15 C -0.093 4.093 16 H 0.068 0.932 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.105 4.105 22 H 0.074 0.926 23 C 0.056 3.944 24 H 0.039 0.961 25 H 0.014 0.986 26 H 0.059 0.941 27 H 0.011 0.989 28 H 0.089 0.911 29 H 0.259 0.741 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 3.074 -11.340 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.014 0.986 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.112 4.112 16 H 0.086 0.914 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.125 4.125 22 H 0.093 0.907 23 C -0.072 4.072 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.084 2.942 -11.142 11.711 hybrid contribution 0.524 0.380 0.943 1.143 sum 2.608 3.322 -10.200 11.040 Atomic orbital electron populations 1.21461 0.97352 0.97440 1.01462 1.21531 0.95218 0.98298 0.99776 1.19440 0.92715 0.91016 0.86119 0.98566 1.21068 1.30723 1.11756 0.89701 0.92185 1.24895 0.95316 0.95137 0.98815 1.69882 1.37479 1.23170 1.22718 0.86602 0.78649 0.80103 0.82691 1.20734 1.21446 1.20008 1.63786 1.57525 1.00908 1.02335 1.22834 0.98030 0.95668 0.91035 1.21410 0.98363 0.96381 0.95079 0.91357 1.20894 0.95178 1.00673 0.97381 1.21593 0.96046 0.98290 0.99846 1.21507 0.98609 0.97731 0.97533 1.21552 0.94499 1.01899 0.97174 1.22396 0.95200 0.97892 0.96993 0.90748 1.22959 0.96823 0.91889 0.95573 0.94177 0.96730 0.92204 0.97022 0.89284 0.93112 0.94228 0.91865 0.92400 0.92583 0.91638 0.92546 0.92551 0.92448 0.92514 0.91467 0.91586 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.36 16 2 C -0.11 -2.66 5.25 -26.73 -0.14 -2.81 16 3 C 0.21 5.30 1.36 -68.87 -0.09 5.20 16 4 H 0.00 -0.09 7.48 -51.93 -0.39 -0.48 16 5 C -0.49 -13.29 6.27 -34.44 -0.22 -13.51 16 6 H 0.06 1.64 7.43 -52.49 -0.39 1.25 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.30 11.33 55.43 0.63 -24.67 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -11.12 4.39 -224.19 -0.98 -12.11 16 14 C 0.05 0.96 4.33 -2.61 -0.01 0.95 16 15 C -0.09 -1.43 2.81 -90.76 -0.25 -1.68 16 16 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.10 -1.32 5.37 -27.95 -0.15 -1.47 16 18 C -0.12 -1.54 5.81 -26.65 -0.15 -1.69 16 19 C -0.12 -1.51 5.93 -26.77 -0.16 -1.67 16 20 C -0.11 -1.78 4.62 -26.94 -0.12 -1.90 16 21 C -0.11 -1.67 3.60 -88.86 -0.32 -1.99 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 23 C 0.06 1.09 5.38 -2.20 -0.01 1.08 16 24 H 0.04 0.86 7.76 -51.93 -0.40 0.46 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 1.47 7.04 -51.93 -0.37 1.11 16 27 H 0.01 0.25 7.00 -51.93 -0.36 -0.11 16 28 H 0.09 2.40 6.10 -51.93 -0.32 2.09 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.04 0.77 5.58 -51.93 -0.29 0.48 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.94 6.80 -51.93 -0.35 0.58 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.25 6.52 -51.93 -0.34 0.91 16 40 H 0.07 1.44 6.60 -51.93 -0.34 1.09 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -27.34 298.31 -9.59 -36.93 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.34 Total: -0.69 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.38 Total: -20.32 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.36 Total: -36.78 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.34 -9.59 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309930676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.070 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds